Wall clock time and date at job start Mon Mar 30 2020 01:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00242 * 2 1 4 4 H 1.48506 * 109.47063 * 270.00160 * 3 2 1 5 5 H 1.48502 * 109.47110 * 30.00133 * 3 2 1 6 6 H 1.48497 * 109.47323 * 150.00088 * 3 2 1 7 7 C 1.37879 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99743 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47141 * 178.46482 * 9 7 2 11 11 C 1.46853 * 111.00313 * 299.90799 * 10 9 7 12 12 C 1.53036 * 109.52420 * 185.83360 * 11 10 9 13 13 C 1.53116 * 109.28229 * 300.82199 * 12 11 10 14 14 C 1.53118 * 109.15349 * 57.65850 * 13 12 11 15 15 C 1.46851 * 110.99762 * 64.11096 * 10 9 7 16 16 H 1.08995 * 109.46599 * 294.16915 * 15 10 9 17 17 C 1.53007 * 109.45672 * 54.14816 * 15 10 9 18 18 H 1.08993 * 109.46911 * 299.03088 * 17 15 10 19 19 O 1.42908 * 109.46666 * 179.03784 * 17 15 10 20 20 C 1.50694 * 109.47115 * 59.03811 * 17 15 10 21 21 C 1.38242 * 120.00059 * 85.03814 * 20 17 15 22 22 C 1.38235 * 120.00026 * 179.78443 * 21 20 17 23 23 C 1.38237 * 119.99737 * 0.46178 * 22 21 20 24 24 C 1.38234 * 120.00302 * 359.77362 * 23 22 21 25 25 C 1.38232 * 119.99835 * 0.02562 * 24 23 22 26 26 H 0.97007 * 119.99731 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46943 * 58.47254 * 9 7 2 28 28 H 1.08995 * 109.47491 * 298.46804 * 9 7 2 29 29 H 1.09001 * 109.46149 * 305.85288 * 11 10 9 30 30 H 1.08999 * 109.46048 * 65.81616 * 11 10 9 31 31 H 1.09006 * 109.50057 * 60.75964 * 12 11 10 32 32 H 1.08998 * 109.50015 * 180.83509 * 12 11 10 33 33 H 1.08997 * 109.52512 * 177.55846 * 13 12 11 34 34 H 1.09004 * 109.52356 * 297.68593 * 13 12 11 35 35 H 1.09001 * 109.49891 * 182.39920 * 14 13 12 36 36 H 1.09000 * 109.51302 * 62.27343 * 14 13 12 37 37 H 0.96695 * 113.99901 * 299.99924 * 19 17 15 38 38 H 1.08000 * 119.99772 * 359.97438 * 21 20 17 39 39 H 1.07994 * 119.99929 * 180.24854 * 22 21 20 40 40 H 1.08002 * 119.99931 * 179.78209 * 23 22 21 41 41 H 1.07997 * 120.00378 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.00229 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2050 -3.6155 -0.0383 11 6 3.0384 -3.5551 -1.2459 12 6 3.9159 -4.8063 -1.3249 13 6 4.7988 -4.8843 -0.0763 14 6 3.9080 -4.8973 1.1689 15 6 3.0308 -3.6432 1.1757 16 1 3.6646 -2.7569 1.2042 17 6 2.1245 -3.6617 2.4084 18 1 1.5125 -2.7599 2.4228 19 8 2.9277 -3.7112 3.5894 20 6 1.2314 -4.8743 2.3570 21 6 1.6857 -6.0883 2.8376 22 6 0.8648 -7.1996 2.7946 23 6 -0.4070 -7.0993 2.2621 24 6 -0.8595 -5.8866 1.7770 25 6 -0.0401 -4.7743 1.8239 26 1 -0.4850 0.8401 0.0004 27 1 0.6035 -2.5449 -0.8763 28 1 0.6454 -2.5691 0.9030 29 1 2.3982 -3.5042 -2.1267 30 1 3.6719 -2.6690 -1.2060 31 1 3.2828 -5.6920 -1.3787 32 1 4.5450 -4.7541 -2.2135 33 1 5.3943 -5.7966 -0.1077 34 1 5.4603 -4.0185 -0.0433 35 1 4.5319 -4.9097 2.0626 36 1 3.2746 -5.7842 1.1542 37 1 3.4993 -4.4892 3.6438 38 1 2.6809 -6.1676 3.2496 39 1 1.2183 -8.1470 3.1737 40 1 -1.0471 -7.9684 2.2252 41 1 -1.8532 -5.8080 1.3614 42 1 -0.3935 -3.8268 1.4445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368996448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:12 Heat of formation + Delta-G solvation = -45.434321 kcal Electronic energy + Delta-G solvation = -22692.853397 eV Core-core repulsion = 19636.409449 eV Total energy + Delta-G solvation = -3056.443949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31917 -39.25171 -37.48550 -35.52699 -33.78784 -32.73390 -31.64610 -30.96824 -28.76631 -27.02387 -25.65149 -23.54518 -23.10591 -22.92494 -21.70667 -20.39619 -18.63670 -18.28607 -17.25567 -16.80023 -16.67600 -16.17539 -15.65703 -15.58723 -15.14607 -15.01740 -14.76297 -14.29461 -14.15581 -14.05910 -13.87171 -13.46199 -13.30019 -13.04169 -12.89009 -12.63809 -12.39499 -12.20807 -12.12597 -12.03858 -11.87082 -11.75169 -11.52419 -11.27368 -10.95627 -10.75001 -10.55979 -9.64100 -9.42189 -8.98038 -8.15995 -6.35428 0.59050 0.65945 1.31569 1.32984 1.42661 2.34132 2.99182 3.07605 3.20773 3.65114 3.80586 3.94213 3.97129 4.09510 4.17763 4.27315 4.34777 4.42301 4.45501 4.61390 4.69816 4.75955 4.82934 4.92968 4.93898 5.04635 5.08537 5.14836 5.20488 5.27774 5.29928 5.31042 5.33958 5.40677 5.54917 5.67879 5.73003 5.78289 5.88745 6.07501 6.25579 6.27770 6.56193 6.80858 6.86866 7.35538 8.84465 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.007019 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.976984 B = 3988.104781 C = 4607.596723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.555 4.555 8 H 0.049 0.951 9 C 0.196 3.804 10 N -0.519 5.519 11 C 0.062 3.938 12 C -0.107 4.107 13 C -0.113 4.113 14 C -0.115 4.115 15 C 0.075 3.925 16 H 0.019 0.981 17 C 0.155 3.845 18 H 0.071 0.929 19 O -0.564 6.564 20 C -0.093 4.093 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.131 4.131 25 C -0.118 4.118 26 H 0.264 0.736 27 H -0.004 1.004 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.014 0.986 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.382 0.618 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.125 0.875 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 -15.841 3.736 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.068 0.932 9 C 0.069 3.931 10 N -0.243 5.243 11 C -0.067 4.067 12 C -0.145 4.145 13 C -0.150 4.150 14 C -0.153 4.153 15 C -0.034 4.034 16 H 0.037 0.963 17 C 0.095 3.905 18 H 0.089 0.911 19 O -0.371 6.371 20 C -0.093 4.093 21 C -0.135 4.135 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.137 4.137 26 H 0.073 0.927 27 H 0.014 0.986 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.233 0.767 38 H 0.157 0.843 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.143 0.857 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.339 -15.615 3.855 16.946 hybrid contribution 0.514 2.176 -0.516 2.294 sum 5.853 -13.439 3.338 15.034 Atomic orbital electron populations 1.70045 1.07299 1.27694 1.51164 1.25724 0.95576 1.02477 0.94706 0.85689 0.78728 0.79757 0.78350 1.19856 1.20584 1.19693 1.21987 0.93108 0.93319 1.50991 0.93236 1.19585 0.91390 0.86348 0.95765 1.62381 1.16994 1.43745 1.01217 1.21920 0.95034 0.96991 0.92721 1.21565 0.97453 0.96951 0.98538 1.21513 0.97256 1.02224 0.94022 1.21804 0.97452 0.97008 0.98992 1.21938 0.93667 0.97506 0.90304 0.96313 1.20649 0.90024 0.95624 0.84169 0.91081 1.86622 1.58936 1.49923 1.41625 1.20219 0.94607 0.95752 0.98750 1.21048 1.00662 0.91640 1.00173 1.21386 0.93945 0.98981 0.99475 1.21401 0.96939 0.97376 0.98674 1.21279 0.99938 0.93187 1.00476 1.21114 0.94596 0.98986 0.98970 0.92686 0.98562 0.95519 0.93121 0.96817 0.91388 0.90530 0.89220 0.93269 0.89953 0.90016 0.76749 0.84255 0.83023 0.83696 0.85659 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.38 13.29 21.45 0.28 -55.10 16 2 C 0.01 0.85 5.46 84.65 0.46 1.31 16 3 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.55 -31.22 7.73 25.60 0.20 -31.02 16 8 H 0.05 2.80 5.84 -2.91 -0.02 2.78 16 9 C 0.20 10.22 4.15 85.56 0.36 10.57 16 10 N -0.52 -21.92 4.06 -875.61 -3.56 -25.48 16 11 C 0.06 2.43 5.04 86.32 0.44 2.86 16 12 C -0.11 -3.08 6.09 30.64 0.19 -2.90 16 13 C -0.11 -2.86 6.00 30.67 0.18 -2.68 16 14 C -0.12 -3.14 4.23 30.65 0.13 -3.01 16 15 C 0.08 2.85 1.52 44.94 0.07 2.92 16 16 H 0.02 0.84 6.88 -2.39 -0.02 0.83 16 17 C 0.15 5.95 2.80 29.85 0.08 6.04 16 18 H 0.07 3.45 6.22 -2.39 -0.01 3.44 16 19 O -0.56 -19.04 13.08 -148.98 -1.95 -20.99 16 20 C -0.09 -3.16 4.28 -19.87 -0.09 -3.25 16 21 C -0.12 -3.03 7.25 22.27 0.16 -2.86 16 22 C -0.12 -2.66 10.05 22.27 0.22 -2.44 16 23 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 24 C -0.13 -3.94 10.05 22.27 0.22 -3.72 16 25 C -0.12 -4.38 8.87 22.27 0.20 -4.18 16 26 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 27 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 28 H 0.03 1.48 3.63 -2.39 -0.01 1.47 16 29 H 0.05 2.08 8.12 -2.39 -0.02 2.06 16 30 H 0.01 0.59 6.70 -2.39 -0.02 0.58 16 31 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.80 6.81 -2.39 -0.02 1.78 16 36 H 0.08 2.16 5.86 -2.39 -0.01 2.15 16 37 H 0.38 9.04 5.67 -74.06 -0.42 8.62 16 38 H 0.14 2.73 6.22 -2.91 -0.02 2.72 16 39 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 42 H 0.09 4.14 5.76 -2.91 -0.02 4.13 16 Total: -1.00 -66.79 315.78 0.46 -66.34 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.61 Total: 23.21 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 3.05 Total: -35.15 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -3.27 Total: -80.58 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -1.95 Total: -20.99 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.79 0.46 -66.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368996448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.901 kcal (2) G-P(sol) polarization free energy of solvation -66.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds