Wall clock time and date at job start Mon Mar 30 2020 01:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99758 * 2 1 4 4 H 1.48504 * 109.46913 * 269.99783 * 3 2 1 5 5 H 1.48492 * 109.47307 * 29.99888 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99870 * 3 2 1 7 7 C 1.37875 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99496 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99950 * 180.02562 * 7 2 1 10 10 N 1.46910 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46842 * 110.99703 * 66.04883 * 10 9 7 12 12 C 1.53039 * 109.52266 * 174.16402 * 11 10 9 13 13 C 1.53123 * 109.31189 * 59.15550 * 12 11 10 14 14 C 1.53129 * 109.15931 * 302.40768 * 13 12 11 15 15 C 1.46849 * 110.99768 * 301.83963 * 10 9 7 16 16 H 1.08995 * 109.46417 * 65.82041 * 15 10 9 17 17 C 1.53005 * 109.46192 * 305.84275 * 15 10 9 18 18 H 1.08999 * 109.47035 * 54.99977 * 17 15 10 19 19 O 1.42906 * 109.46750 * 295.00320 * 17 15 10 20 20 C 1.50695 * 109.47064 * 175.00308 * 17 15 10 21 21 C 1.38235 * 120.00031 * 84.72970 * 20 17 15 22 22 C 1.38230 * 119.99896 * 179.76698 * 21 20 17 23 23 C 1.38238 * 120.00078 * 0.47948 * 22 21 20 24 24 C 1.38233 * 119.99750 * 359.79466 * 23 22 21 25 25 C 1.38231 * 120.00253 * 359.95600 * 24 23 22 26 26 H 0.97003 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47404 * 60.00616 * 9 7 2 28 28 H 1.09002 * 109.47387 * 299.99664 * 9 7 2 29 29 H 1.08995 * 109.46659 * 54.14295 * 11 10 9 30 30 H 1.09009 * 109.46400 * 294.17124 * 11 10 9 31 31 H 1.09002 * 109.50563 * 179.11883 * 12 11 10 32 32 H 1.09003 * 109.50107 * 299.19864 * 12 11 10 33 33 H 1.09000 * 109.52057 * 62.27355 * 13 12 11 34 34 H 1.08995 * 109.52240 * 182.46183 * 13 12 11 35 35 H 1.09000 * 109.46579 * 297.65836 * 14 13 12 36 36 H 1.08997 * 109.53656 * 177.57437 * 14 13 12 37 37 H 0.96691 * 113.99872 * 299.99880 * 19 17 15 38 38 H 1.08006 * 119.99948 * 359.97438 * 21 20 17 39 39 H 1.08003 * 120.00108 * 180.24921 * 22 21 20 40 40 H 1.08000 * 119.99974 * 179.76747 * 23 22 21 41 41 H 1.08000 * 119.99890 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.00066 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 3.6524 -3.2603 -1.2522 12 6 4.3005 -4.6465 -1.2782 13 6 3.8059 -5.4594 -0.0786 14 6 4.1378 -4.7042 1.2115 15 6 3.4943 -3.3165 1.1653 16 1 2.4122 -3.4203 1.0865 17 6 3.8412 -2.5512 2.4440 18 1 3.4578 -1.5333 2.3735 19 8 5.2604 -2.5154 2.6075 20 6 3.2164 -3.2425 3.6283 21 6 3.8690 -4.2992 4.2353 22 6 3.2981 -4.9302 5.3246 23 6 2.0699 -4.5110 5.8009 24 6 1.4147 -3.4580 5.1903 25 6 1.9880 -2.8236 4.1042 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6800 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 4.0141 -2.6743 -2.0970 30 1 2.5694 -3.3646 -1.3197 31 1 4.0287 -5.1580 -2.2015 32 1 5.3843 -4.5425 -1.2253 33 1 2.7271 -5.5973 -0.1520 34 1 4.2986 -6.4316 -0.0693 35 1 5.2190 -4.6011 1.3041 36 1 3.7502 -5.2568 2.0673 37 1 5.6704 -3.3883 2.6773 38 1 4.8265 -4.6296 3.8605 39 1 3.8098 -5.7532 5.8014 40 1 1.6221 -5.0065 6.6496 41 1 0.4549 -3.1308 5.5621 42 1 1.4762 -2.0007 3.6275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368996449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:16 Heat of formation + Delta-G solvation = -25.980495 kcal Electronic energy + Delta-G solvation = -22502.438710 eV Core-core repulsion = 19446.838343 eV Total energy + Delta-G solvation = -3055.600367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92234 -38.21244 -35.90414 -33.72820 -31.92466 -31.62973 -30.67625 -29.77276 -27.39974 -25.75325 -23.61003 -22.42560 -22.06470 -21.06083 -20.28914 -18.91079 -17.34024 -16.75829 -15.82172 -15.34347 -15.20744 -14.83473 -14.27347 -14.14796 -13.91615 -13.76578 -13.25723 -13.14995 -12.82232 -12.65862 -12.31879 -12.15443 -11.88198 -11.49249 -11.35090 -11.05095 -10.94385 -10.81338 -10.61121 -10.57946 -10.33513 -10.17597 -9.98050 -9.67927 -9.45988 -9.30504 -8.68564 -8.61964 -8.39725 -7.14688 -6.13453 -4.13607 1.55021 1.61738 3.26666 3.34881 3.40545 3.97381 4.37851 4.71336 4.94729 5.05742 5.11057 5.15793 5.20118 5.25329 5.26259 5.32551 5.47270 5.67167 5.69794 5.76317 5.88588 5.96117 6.08320 6.12962 6.18509 6.26412 6.29019 6.32074 6.41772 6.50209 6.60216 6.64420 6.69733 6.73373 6.85997 6.95783 6.97540 7.13841 7.22173 7.54846 8.00844 8.11160 8.17137 8.42325 8.89079 9.49955 10.98965 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.007885 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.088033 B = 3550.203538 C = 4718.384947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.148 3.852 10 N -0.520 5.520 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.115 4.115 14 C -0.121 4.121 15 C 0.073 3.927 16 H 0.060 0.940 17 C 0.150 3.850 18 H 0.123 0.877 19 O -0.545 6.545 20 C -0.100 4.100 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.102 4.102 26 H 0.263 0.737 27 H 0.036 0.964 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.360 0.640 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.974 -10.417 6.906 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.590 4.590 8 H 0.092 0.908 9 C 0.022 3.978 10 N -0.243 5.243 11 C -0.067 4.067 12 C -0.154 4.154 13 C -0.153 4.153 14 C -0.159 4.159 15 C -0.036 4.036 16 H 0.077 0.923 17 C 0.091 3.909 18 H 0.141 0.859 19 O -0.350 6.350 20 C -0.101 4.101 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.120 4.120 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.208 0.792 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.232 -9.633 6.897 13.881 hybrid contribution -0.744 0.324 -0.110 0.819 sum 6.488 -9.310 6.787 13.222 Atomic orbital electron populations 1.69927 1.06317 1.26977 1.50340 1.24941 0.94636 0.99079 0.94165 0.86889 0.80666 0.83758 0.78784 1.20188 1.21300 1.18554 1.21696 0.90684 0.94559 1.52062 0.90783 1.20274 0.94389 0.85956 0.97209 1.62318 1.58350 1.03251 1.00407 1.21898 0.98557 0.93360 0.92913 1.21618 1.00712 0.95990 0.97091 1.21498 1.00758 0.97782 0.95238 1.21758 1.00749 0.95772 0.97592 1.21919 0.98522 0.92101 0.91085 0.92253 1.21045 0.80057 1.00681 0.89113 0.85941 1.86646 1.19592 1.33043 1.95733 1.20715 0.95555 0.96191 0.97633 1.20869 0.99891 0.96039 0.96481 1.21019 0.96062 1.00178 0.97077 1.21079 0.95682 0.97706 1.00240 1.21149 0.99862 0.96380 0.96368 1.21219 0.94892 1.00073 0.95827 0.92700 0.94627 0.95835 0.91734 0.94124 0.92551 0.91859 0.92456 0.92701 0.91775 0.91845 0.79238 0.86468 0.86507 0.86592 0.86218 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.55 -14.79 8.18 -34.44 -0.28 -15.07 16 8 H 0.07 2.17 6.08 -52.49 -0.32 1.85 16 9 C 0.15 3.52 3.64 -4.97 -0.02 3.50 16 10 N -0.52 -10.61 4.64 -228.12 -1.06 -11.67 16 11 C 0.06 1.16 5.14 -3.84 -0.02 1.14 16 12 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 13 C -0.12 -1.66 6.01 -26.60 -0.16 -1.82 16 14 C -0.12 -1.80 4.25 -26.65 -0.11 -1.92 16 15 C 0.07 1.36 1.24 -67.72 -0.08 1.28 16 16 H 0.06 1.30 6.57 -51.93 -0.34 0.96 16 17 C 0.15 2.75 2.66 -27.88 -0.07 2.67 16 18 H 0.12 2.64 5.89 -51.93 -0.31 2.34 16 19 O -0.55 -9.47 12.98 -35.23 -0.46 -9.92 16 20 C -0.10 -1.63 4.73 -104.63 -0.49 -2.13 16 21 C -0.11 -1.57 7.39 -39.59 -0.29 -1.86 16 22 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 23 C -0.13 -1.63 10.05 -39.58 -0.40 -2.02 16 24 C -0.12 -1.70 10.05 -39.59 -0.40 -2.10 16 25 C -0.10 -1.70 9.68 -39.58 -0.38 -2.09 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.04 0.88 5.27 -51.93 -0.27 0.60 16 28 H 0.02 0.57 7.49 -51.93 -0.39 0.18 16 29 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 30 H 0.04 0.87 7.03 -51.92 -0.37 0.50 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.89 6.68 -51.93 -0.35 0.54 16 36 H 0.06 0.88 5.98 -51.93 -0.31 0.57 16 37 H 0.36 4.95 5.53 45.56 0.25 5.20 16 38 H 0.12 1.36 6.17 -52.48 -0.32 1.03 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -29.75 318.28 -9.68 -39.43 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.69 Total: 8.98 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -3.37 Total: -22.29 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.29 Total: -37.52 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.46 Total: -9.92 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.75 -9.68 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368996449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.450 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds