Wall clock time and date at job start Mon Mar 30 2020 01:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99758 * 2 1 4 4 H 1.48504 * 109.46913 * 269.99783 * 3 2 1 5 5 H 1.48492 * 109.47307 * 29.99888 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99870 * 3 2 1 7 7 C 1.37875 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99496 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99950 * 180.02562 * 7 2 1 10 10 N 1.46910 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46842 * 110.99703 * 66.04883 * 10 9 7 12 12 C 1.53039 * 109.52266 * 174.16402 * 11 10 9 13 13 C 1.53123 * 109.31189 * 59.15550 * 12 11 10 14 14 C 1.53129 * 109.15931 * 302.40768 * 13 12 11 15 15 C 1.46849 * 110.99768 * 301.83963 * 10 9 7 16 16 H 1.08995 * 109.46417 * 65.82041 * 15 10 9 17 17 C 1.53005 * 109.46192 * 305.84275 * 15 10 9 18 18 H 1.08999 * 109.47035 * 54.99977 * 17 15 10 19 19 O 1.42906 * 109.46750 * 295.00320 * 17 15 10 20 20 C 1.50695 * 109.47064 * 175.00308 * 17 15 10 21 21 C 1.38235 * 120.00031 * 84.72970 * 20 17 15 22 22 C 1.38230 * 119.99896 * 179.76698 * 21 20 17 23 23 C 1.38238 * 120.00078 * 0.47948 * 22 21 20 24 24 C 1.38233 * 119.99750 * 359.79466 * 23 22 21 25 25 C 1.38231 * 120.00253 * 359.95600 * 24 23 22 26 26 H 0.97003 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47404 * 60.00616 * 9 7 2 28 28 H 1.09002 * 109.47387 * 299.99664 * 9 7 2 29 29 H 1.08995 * 109.46659 * 54.14295 * 11 10 9 30 30 H 1.09009 * 109.46400 * 294.17124 * 11 10 9 31 31 H 1.09002 * 109.50563 * 179.11883 * 12 11 10 32 32 H 1.09003 * 109.50107 * 299.19864 * 12 11 10 33 33 H 1.09000 * 109.52057 * 62.27355 * 13 12 11 34 34 H 1.08995 * 109.52240 * 182.46183 * 13 12 11 35 35 H 1.09000 * 109.46579 * 297.65836 * 14 13 12 36 36 H 1.08997 * 109.53656 * 177.57437 * 14 13 12 37 37 H 0.96691 * 113.99872 * 299.99880 * 19 17 15 38 38 H 1.08006 * 119.99948 * 359.97438 * 21 20 17 39 39 H 1.08003 * 120.00108 * 180.24921 * 22 21 20 40 40 H 1.08000 * 119.99974 * 179.76747 * 23 22 21 41 41 H 1.08000 * 119.99890 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.00066 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 3.6524 -3.2603 -1.2522 12 6 4.3005 -4.6465 -1.2782 13 6 3.8059 -5.4594 -0.0786 14 6 4.1378 -4.7042 1.2115 15 6 3.4943 -3.3165 1.1653 16 1 2.4122 -3.4203 1.0865 17 6 3.8412 -2.5512 2.4440 18 1 3.4578 -1.5333 2.3735 19 8 5.2604 -2.5154 2.6075 20 6 3.2164 -3.2425 3.6283 21 6 3.8690 -4.2992 4.2353 22 6 3.2981 -4.9302 5.3246 23 6 2.0699 -4.5110 5.8009 24 6 1.4147 -3.4580 5.1903 25 6 1.9880 -2.8236 4.1042 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6800 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 4.0141 -2.6743 -2.0970 30 1 2.5694 -3.3646 -1.3197 31 1 4.0287 -5.1580 -2.2015 32 1 5.3843 -4.5425 -1.2253 33 1 2.7271 -5.5973 -0.1520 34 1 4.2986 -6.4316 -0.0693 35 1 5.2190 -4.6011 1.3041 36 1 3.7502 -5.2568 2.0673 37 1 5.6704 -3.3883 2.6773 38 1 4.8265 -4.6296 3.8605 39 1 3.8098 -5.7532 5.8014 40 1 1.6221 -5.0065 6.6496 41 1 0.4549 -3.1308 5.5621 42 1 1.4762 -2.0007 3.6275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368996449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:15 Heat of formation + Delta-G solvation = -46.431716 kcal Electronic energy + Delta-G solvation = -22503.325541 eV Core-core repulsion = 19446.838343 eV Total energy + Delta-G solvation = -3056.487199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27261 -39.51504 -37.29052 -35.49161 -33.84514 -32.92907 -31.79029 -31.05021 -29.31392 -27.11071 -25.31865 -23.73392 -23.26853 -22.63229 -21.60531 -20.53305 -18.78770 -18.57848 -17.20564 -16.71623 -16.51867 -16.38281 -15.99785 -15.67981 -15.15418 -15.03153 -14.86418 -14.51801 -14.25773 -14.11122 -13.74668 -13.61087 -13.35241 -13.18523 -12.85238 -12.66517 -12.33008 -12.27272 -12.08703 -12.02399 -11.91876 -11.76522 -11.57668 -11.41962 -10.98400 -10.82524 -10.69169 -9.79516 -9.58381 -8.94848 -8.35054 -6.38998 0.42652 0.50365 1.29067 1.31510 1.43421 2.28968 2.83128 3.00035 3.21768 3.60465 3.78926 3.92452 3.96835 4.03156 4.13230 4.16829 4.29594 4.32398 4.43083 4.53967 4.62359 4.70243 4.79315 4.81988 4.85069 4.99184 5.02984 5.05469 5.10414 5.12436 5.17666 5.20516 5.27809 5.30816 5.42736 5.56680 5.57126 5.62205 5.75055 6.08943 6.13461 6.33962 6.46736 6.67098 6.89151 7.27940 8.80859 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.007885 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.088033 B = 3550.203538 C = 4718.384947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.017 3.983 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.541 4.541 8 H 0.034 0.966 9 C 0.157 3.843 10 N -0.514 5.514 11 C 0.057 3.943 12 C -0.107 4.107 13 C -0.115 4.115 14 C -0.112 4.112 15 C 0.078 3.922 16 H 0.012 0.988 17 C 0.161 3.839 18 H 0.076 0.924 19 O -0.551 6.551 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.136 4.136 26 H 0.265 0.735 27 H 0.029 0.971 28 H 0.022 0.978 29 H 0.062 0.938 30 H 0.003 0.997 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.379 0.621 38 H 0.145 0.855 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.130 0.870 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.859 -12.764 8.258 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.181 4.181 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.580 4.580 8 H 0.052 0.948 9 C 0.030 3.970 10 N -0.237 5.237 11 C -0.071 4.071 12 C -0.144 4.144 13 C -0.153 4.153 14 C -0.150 4.150 15 C -0.032 4.032 16 H 0.030 0.970 17 C 0.101 3.899 18 H 0.093 0.907 19 O -0.359 6.359 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.154 4.154 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.021 0.979 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.229 0.771 38 H 0.163 0.837 39 H 0.175 0.825 40 H 0.169 0.831 41 H 0.148 0.852 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.135 -12.007 8.246 17.745 hybrid contribution -1.693 0.961 -0.482 2.005 sum 8.443 -11.046 7.764 15.924 Atomic orbital electron populations 1.70066 1.08069 1.27979 1.52241 1.25792 0.95412 1.02894 0.94018 0.85854 0.79579 0.79168 0.79324 1.19017 1.20828 1.17548 1.21806 0.92448 0.92971 1.50737 0.94808 1.20072 0.91869 0.88538 0.96550 1.62380 1.57528 1.02002 1.01795 1.22003 0.96738 0.96140 0.92209 1.21575 1.01107 0.93117 0.98630 1.21539 1.00090 0.99305 0.94330 1.21740 1.01606 0.92883 0.98747 1.21924 0.96098 0.94599 0.90548 0.96976 1.20594 0.80750 0.98421 0.90138 0.90653 1.86606 1.18775 1.34769 1.95745 1.20554 0.95774 0.97897 0.97692 1.21150 1.00607 0.94732 0.96551 1.21507 0.95657 1.00297 0.95941 1.21504 0.95668 0.96390 1.00486 1.21335 1.00569 0.97029 0.95673 1.21117 0.95999 1.00561 0.97747 0.92572 0.95291 0.95960 0.91943 0.97886 0.90539 0.90220 0.94280 0.88865 0.89496 0.90323 0.77104 0.83714 0.82461 0.83150 0.85157 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.29 13.96 21.45 0.30 -58.99 16 2 C 0.02 1.01 5.47 84.65 0.46 1.48 16 3 Si 0.94 45.34 27.47 68.60 1.88 47.23 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.25 -11.70 6.54 99.48 0.65 -11.04 16 7 C -0.54 -31.15 8.18 25.60 0.21 -30.94 16 8 H 0.03 2.18 6.08 -2.91 -0.02 2.16 16 9 C 0.16 7.80 3.64 85.55 0.31 8.11 16 10 N -0.51 -21.54 4.64 -875.63 -4.06 -25.61 16 11 C 0.06 2.24 5.14 86.33 0.44 2.68 16 12 C -0.11 -3.01 6.09 30.65 0.19 -2.82 16 13 C -0.12 -3.03 6.01 30.68 0.18 -2.85 16 14 C -0.11 -3.11 4.25 30.65 0.13 -2.98 16 15 C 0.08 2.99 1.24 44.94 0.06 3.04 16 16 H 0.01 0.59 6.57 -2.39 -0.02 0.57 16 17 C 0.16 6.10 2.66 29.85 0.08 6.18 16 18 H 0.08 3.55 5.89 -2.39 -0.01 3.53 16 19 O -0.55 -18.58 12.98 -148.98 -1.93 -20.51 16 20 C -0.12 -3.93 4.73 -19.87 -0.09 -4.03 16 21 C -0.11 -2.76 7.39 22.27 0.16 -2.60 16 22 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 23 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 24 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 25 C -0.14 -4.87 9.68 22.27 0.22 -4.65 16 26 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.03 1.49 5.27 -2.39 -0.01 1.48 16 28 H 0.02 1.11 7.49 -2.39 -0.02 1.09 16 29 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 30 H 0.00 0.13 7.03 -2.38 -0.02 0.11 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.05 6.68 -2.39 -0.02 2.04 16 36 H 0.08 1.97 5.98 -2.39 -0.01 1.95 16 37 H 0.38 9.24 5.53 -74.06 -0.41 8.83 16 38 H 0.15 2.68 6.17 -2.91 -0.02 2.66 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.09 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -70.55 318.28 -0.24 -70.79 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.55 Total: 24.55 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 3.02 Total: -37.46 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -3.76 Total: -84.59 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -1.93 Total: -20.51 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal Total: -70.55 -0.24 -70.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368996449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.359 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds