Wall clock time and date at job start Mon Mar 30 2020 01:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00616 * 2 1 4 4 H 1.48503 * 109.46800 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47130 * 120.00199 * 3 2 1 6 6 H 1.48502 * 109.47402 * 240.00464 * 3 2 1 7 7 C 1.37880 * 119.99354 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99612 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00242 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46848 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.46924 * 180.02562 * 11 10 9 13 13 C 1.47845 * 110.99518 * 290.83821 * 12 11 10 14 14 C 1.54913 * 104.79469 * 213.63654 * 13 12 11 15 15 C 1.55139 * 101.65067 * 37.07496 * 14 13 12 16 16 H 1.08997 * 110.70897 * 82.72935 * 15 14 13 17 17 O 1.42898 * 110.70423 * 205.96609 * 15 14 13 18 18 C 1.35903 * 116.99709 * 269.83415 * 17 15 14 19 19 C 1.38729 * 120.05547 * 5.20757 * 18 17 15 20 20 C 1.38152 * 119.94376 * 179.74675 * 19 18 17 21 21 C 1.38269 * 120.05326 * 0.51133 * 20 19 18 22 22 C 1.38267 * 120.11126 * 359.76152 * 21 20 19 23 23 C 1.38139 * 120.05643 * 359.97438 * 22 21 20 24 24 C 1.47436 * 111.00002 * 170.00070 * 12 11 10 25 25 H 0.97000 * 119.99677 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47039 * 299.99635 * 9 7 2 27 27 H 1.08994 * 109.47356 * 60.00220 * 9 7 2 28 28 H 1.08999 * 109.47280 * 299.99694 * 10 9 7 29 29 H 1.08997 * 109.47659 * 59.99847 * 10 9 7 30 30 H 1.08999 * 109.47004 * 299.99953 * 11 10 9 31 31 H 1.08994 * 109.47352 * 59.99967 * 11 10 9 32 32 H 1.08993 * 110.37719 * 332.46733 * 13 12 11 33 33 H 1.09008 * 110.36906 * 94.81277 * 13 12 11 34 34 H 1.08998 * 110.98722 * 278.98073 * 14 13 12 35 35 H 1.09001 * 110.98880 * 155.16702 * 14 13 12 36 36 H 1.08005 * 120.02879 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.97107 * 180.22822 * 20 19 18 38 38 H 1.07997 * 119.94168 * 179.74948 * 21 20 19 39 39 H 1.07997 * 119.97005 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.02928 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.88916 * 242.66184 * 24 12 11 42 42 H 1.09004 * 109.88791 * 3.84884 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1031 1.6961 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4799 -4.9872 0.0001 12 7 2.4344 -6.1038 0.0007 13 6 3.1519 -6.1881 -1.2892 14 6 3.3902 -7.7026 -1.5111 15 6 2.0787 -8.3117 -0.9491 16 1 1.2863 -8.2772 -1.6968 17 8 2.2951 -9.6515 -0.5017 18 6 2.1046 -10.6438 -1.4106 19 6 1.8232 -10.3306 -2.7325 20 6 1.6352 -11.3411 -3.6556 21 6 1.7167 -12.6637 -3.2607 22 6 1.9914 -12.9784 -1.9426 23 6 2.1856 -11.9716 -1.0169 24 6 1.7474 -7.3861 0.2404 25 1 -0.4850 0.8401 0.0004 26 1 0.6245 -2.5571 0.8898 27 1 0.6239 -2.5568 -0.8902 28 1 2.8716 -3.6045 -0.8905 29 1 2.8717 -3.6045 0.8894 30 1 0.8535 -5.0446 0.8903 31 1 0.8529 -5.0451 -0.8896 32 1 2.5387 -5.7788 -2.0920 33 1 4.1031 -5.6590 -1.2295 34 1 4.2553 -8.0487 -0.9456 35 1 3.5028 -7.9288 -2.5714 36 1 1.7549 -9.2977 -3.0405 37 1 1.4198 -11.0978 -4.6855 38 1 1.5654 -13.4522 -3.9830 39 1 2.0542 -14.0122 -1.6366 40 1 2.3998 -12.2180 0.0126 41 1 2.1065 -7.8315 1.1681 42 1 0.6707 -7.2252 0.2962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374214469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:33 Heat of formation + Delta-G solvation = -18.040572 kcal Electronic energy + Delta-G solvation = -20334.173240 eV Core-core repulsion = 17278.917173 eV Total energy + Delta-G solvation = -3055.256066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60105 -38.84087 -37.14888 -34.13624 -32.29393 -31.27310 -30.26409 -29.92138 -28.45801 -26.13100 -23.50076 -22.80907 -22.66685 -21.24012 -20.59972 -19.89783 -18.68047 -16.64078 -16.37832 -16.03355 -15.65529 -15.16440 -14.85193 -14.55618 -14.43234 -14.25531 -13.76406 -13.59114 -13.21592 -12.82707 -12.66258 -12.33325 -12.06039 -11.93725 -11.71904 -11.49512 -11.30049 -11.12423 -10.85070 -10.80315 -10.75523 -10.53676 -10.46365 -9.65665 -9.33383 -9.28635 -9.06634 -8.43976 -8.33267 -8.16831 -5.98715 -4.00735 1.05540 1.17966 2.91799 3.34490 3.38544 3.41384 3.51866 4.05682 4.36192 4.47651 4.53503 4.57515 4.65622 4.72455 4.87487 5.03956 5.10102 5.22902 5.26795 5.37028 5.41860 5.46257 5.60339 5.69258 5.73448 5.80605 5.90468 5.93940 6.04125 6.08742 6.13606 6.25100 6.28530 6.52368 6.66725 6.74920 7.05096 7.20319 7.22367 7.32244 7.68969 7.83753 8.01579 8.44949 9.06196 9.63119 11.12752 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.050129 B = 0.002538 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.425458 B =11028.577339 C =11104.175744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.049 3.951 12 N -0.523 5.523 13 C 0.045 3.955 14 C -0.150 4.150 15 C 0.062 3.938 16 H 0.081 0.919 17 O -0.301 6.301 18 C 0.134 3.866 19 C -0.210 4.210 20 C -0.080 4.080 21 C -0.163 4.163 22 C -0.082 4.082 23 C -0.155 4.155 24 C 0.048 3.952 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -25.003 -5.707 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.078 4.078 12 N -0.248 5.248 13 C -0.083 4.083 14 C -0.188 4.188 15 C 0.005 3.995 16 H 0.099 0.901 17 O -0.214 6.214 18 C 0.089 3.911 19 C -0.229 4.229 20 C -0.098 4.098 21 C -0.182 4.182 22 C -0.100 4.100 23 C -0.174 4.174 24 C -0.080 4.080 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.108 0.892 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.733 -24.782 -5.090 25.574 hybrid contribution -0.267 0.959 -0.909 1.348 sum 3.466 -23.824 -5.999 24.811 Atomic orbital electron populations 1.69956 1.06061 1.26670 1.50958 1.25033 0.94858 0.99266 0.95388 0.86650 0.79569 0.83103 0.78633 1.21325 1.20204 1.20273 1.21213 0.93022 0.91030 1.50437 0.92713 1.19074 0.94027 0.91418 0.97063 1.21611 0.99134 0.92471 1.00898 1.22579 0.93621 0.91249 1.00366 1.63745 1.27303 1.02122 1.31602 1.22992 1.00109 0.94549 0.90614 1.23264 0.98084 0.96100 1.01402 1.23818 0.97930 0.79775 0.97983 0.90095 1.86128 1.83612 1.14420 1.37252 1.19086 0.94919 0.88736 0.88376 1.21351 1.08006 1.00538 0.92977 1.20976 0.97196 0.92527 0.99120 1.21060 1.04313 0.96415 0.96385 1.20968 0.97375 0.98762 0.92899 1.20478 1.06424 0.89616 1.00885 1.22824 0.98324 0.89075 0.97773 0.92986 0.96598 0.96874 0.93512 0.92491 0.90996 0.95049 0.92986 0.89447 0.89433 0.90579 0.85354 0.85854 0.86027 0.85466 0.85214 0.89248 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.15 5.20 -26.73 -0.14 -2.29 16 11 C 0.05 0.85 4.56 -3.82 -0.02 0.83 16 12 N -0.52 -7.85 5.16 -231.25 -1.19 -9.04 16 13 C 0.04 0.59 5.78 -2.29 -0.01 0.58 16 14 C -0.15 -1.67 6.62 -24.59 -0.16 -1.84 16 15 C 0.06 0.72 2.73 -24.91 -0.07 0.65 16 16 H 0.08 0.87 6.25 -51.93 -0.32 0.55 16 17 O -0.30 -3.67 9.86 -19.44 -0.19 -3.86 16 18 C 0.13 1.50 6.67 -39.22 -0.26 1.24 16 19 C -0.21 -2.11 8.91 -39.43 -0.35 -2.46 16 20 C -0.08 -0.70 10.04 -39.60 -0.40 -1.09 16 21 C -0.16 -1.31 10.04 -39.56 -0.40 -1.71 16 22 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 23 C -0.16 -1.52 9.99 -39.43 -0.39 -1.92 16 24 C 0.05 0.62 6.64 -2.84 -0.02 0.60 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.95 7.49 -51.93 -0.39 0.57 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 31 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 32 H 0.05 0.69 7.62 -51.93 -0.40 0.30 16 33 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.73 7.76 -51.93 -0.40 0.33 16 36 H 0.13 1.20 5.59 -52.48 -0.29 0.90 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16 42 H 0.06 0.80 7.55 -51.93 -0.39 0.41 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -30.90 341.14 -10.49 -41.39 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.79 Total: -2.32 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -3.17 Total: -21.70 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.46 Total: -35.47 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.19 Total: -3.86 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.90 -10.49 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374214469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.345 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds