Wall clock time and date at job start Mon Mar 30 2020 01:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00616 * 2 1 4 4 H 1.48503 * 109.46800 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47130 * 120.00199 * 3 2 1 6 6 H 1.48502 * 109.47402 * 240.00464 * 3 2 1 7 7 C 1.37880 * 119.99354 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99612 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00242 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46848 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.46924 * 180.02562 * 11 10 9 13 13 C 1.47845 * 110.99518 * 290.83821 * 12 11 10 14 14 C 1.54913 * 104.79469 * 213.63654 * 13 12 11 15 15 C 1.55139 * 101.65067 * 37.07496 * 14 13 12 16 16 H 1.08997 * 110.70897 * 82.72935 * 15 14 13 17 17 O 1.42898 * 110.70423 * 205.96609 * 15 14 13 18 18 C 1.35903 * 116.99709 * 269.83415 * 17 15 14 19 19 C 1.38729 * 120.05547 * 5.20757 * 18 17 15 20 20 C 1.38152 * 119.94376 * 179.74675 * 19 18 17 21 21 C 1.38269 * 120.05326 * 0.51133 * 20 19 18 22 22 C 1.38267 * 120.11126 * 359.76152 * 21 20 19 23 23 C 1.38139 * 120.05643 * 359.97438 * 22 21 20 24 24 C 1.47436 * 111.00002 * 170.00070 * 12 11 10 25 25 H 0.97000 * 119.99677 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47039 * 299.99635 * 9 7 2 27 27 H 1.08994 * 109.47356 * 60.00220 * 9 7 2 28 28 H 1.08999 * 109.47280 * 299.99694 * 10 9 7 29 29 H 1.08997 * 109.47659 * 59.99847 * 10 9 7 30 30 H 1.08999 * 109.47004 * 299.99953 * 11 10 9 31 31 H 1.08994 * 109.47352 * 59.99967 * 11 10 9 32 32 H 1.08993 * 110.37719 * 332.46733 * 13 12 11 33 33 H 1.09008 * 110.36906 * 94.81277 * 13 12 11 34 34 H 1.08998 * 110.98722 * 278.98073 * 14 13 12 35 35 H 1.09001 * 110.98880 * 155.16702 * 14 13 12 36 36 H 1.08005 * 120.02879 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.97107 * 180.22822 * 20 19 18 38 38 H 1.07997 * 119.94168 * 179.74948 * 21 20 19 39 39 H 1.07997 * 119.97005 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.02928 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.88916 * 242.66184 * 24 12 11 42 42 H 1.09004 * 109.88791 * 3.84884 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1031 1.6961 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4799 -4.9872 0.0001 12 7 2.4344 -6.1038 0.0007 13 6 3.1519 -6.1881 -1.2892 14 6 3.3902 -7.7026 -1.5111 15 6 2.0787 -8.3117 -0.9491 16 1 1.2863 -8.2772 -1.6968 17 8 2.2951 -9.6515 -0.5017 18 6 2.1046 -10.6438 -1.4106 19 6 1.8232 -10.3306 -2.7325 20 6 1.6352 -11.3411 -3.6556 21 6 1.7167 -12.6637 -3.2607 22 6 1.9914 -12.9784 -1.9426 23 6 2.1856 -11.9716 -1.0169 24 6 1.7474 -7.3861 0.2404 25 1 -0.4850 0.8401 0.0004 26 1 0.6245 -2.5571 0.8898 27 1 0.6239 -2.5568 -0.8902 28 1 2.8716 -3.6045 -0.8905 29 1 2.8717 -3.6045 0.8894 30 1 0.8535 -5.0446 0.8903 31 1 0.8529 -5.0451 -0.8896 32 1 2.5387 -5.7788 -2.0920 33 1 4.1031 -5.6590 -1.2295 34 1 4.2553 -8.0487 -0.9456 35 1 3.5028 -7.9288 -2.5714 36 1 1.7549 -9.2977 -3.0405 37 1 1.4198 -11.0978 -4.6855 38 1 1.5654 -13.4522 -3.9830 39 1 2.0542 -14.0122 -1.6366 40 1 2.3998 -12.2180 0.0126 41 1 2.1065 -7.8315 1.1681 42 1 0.6707 -7.2252 0.2962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374214469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:32 Heat of formation + Delta-G solvation = -35.633018 kcal Electronic energy + Delta-G solvation = -20334.936106 eV Core-core repulsion = 17278.917173 eV Total energy + Delta-G solvation = -3056.018932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43498 -39.79549 -38.04114 -35.97209 -34.05263 -32.07376 -31.41733 -30.89370 -29.51818 -27.86075 -24.95809 -23.82692 -23.41352 -22.55533 -21.58090 -21.44431 -19.46570 -18.50687 -17.43271 -16.88995 -16.62711 -16.49392 -16.22793 -15.89313 -15.67625 -15.14222 -14.74942 -14.46643 -14.33899 -14.26370 -14.01634 -13.54047 -13.42349 -13.06407 -13.05923 -12.71440 -12.51850 -12.45809 -12.28905 -12.26040 -12.08145 -11.68204 -11.61236 -11.43744 -11.37178 -11.10509 -10.54773 -9.95012 -9.36866 -9.16462 -8.20190 -6.31069 0.39263 0.48804 1.39967 1.43198 1.51101 2.07533 2.41090 2.84491 2.93888 3.12869 3.41331 3.57766 3.78247 3.93691 3.99101 4.12310 4.16957 4.26551 4.29508 4.36495 4.46156 4.51364 4.54620 4.70744 4.72287 4.76539 4.86436 4.91571 4.95577 5.03941 5.07941 5.09840 5.23339 5.38215 5.49072 5.51935 5.60811 5.73219 5.85727 5.87390 5.95673 6.00024 6.26939 6.44512 6.85446 7.37982 8.91541 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.050129 B = 0.002538 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.425458 B =11028.577339 C =11104.175744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.087 4.087 11 C 0.061 3.939 12 N -0.532 5.532 13 C 0.041 3.959 14 C -0.139 4.139 15 C 0.069 3.931 16 H 0.089 0.911 17 O -0.315 6.315 18 C 0.108 3.892 19 C -0.221 4.221 20 C -0.088 4.088 21 C -0.164 4.164 22 C -0.083 4.083 23 C -0.170 4.170 24 C 0.047 3.953 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.134 0.866 41 H 0.087 0.913 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -26.164 -6.755 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.066 4.066 12 N -0.258 5.258 13 C -0.086 4.086 14 C -0.177 4.177 15 C 0.011 3.989 16 H 0.107 0.893 17 O -0.229 6.229 18 C 0.063 3.937 19 C -0.240 4.240 20 C -0.105 4.105 21 C -0.182 4.182 22 C -0.101 4.101 23 C -0.188 4.188 24 C -0.080 4.080 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.171 0.829 40 H 0.152 0.848 41 H 0.106 0.894 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.649 -25.968 -6.141 27.086 hybrid contribution -0.573 1.219 -0.600 1.474 sum 4.076 -24.749 -6.741 25.973 Atomic orbital electron populations 1.70089 1.07773 1.27836 1.51680 1.25993 0.95805 1.03385 0.94739 0.85499 0.78282 0.78061 0.79210 1.20777 1.19237 1.19100 1.21663 0.93515 0.92407 1.50545 0.92305 1.18972 0.94397 0.93044 0.94782 1.21344 0.97950 0.92545 1.00709 1.22294 0.93448 0.90527 1.00375 1.63639 1.26904 1.02331 1.32886 1.23043 0.99658 0.96155 0.89730 1.23181 0.97745 0.94251 1.02485 1.23684 0.98281 0.79668 0.97225 0.89297 1.86087 1.84142 1.14613 1.38014 1.19355 0.96576 0.88919 0.88827 1.21487 1.08393 1.01207 0.92883 1.21301 0.96695 0.92645 0.99906 1.21442 1.02995 0.96883 0.96858 1.21320 0.96305 0.99669 0.92770 1.20726 1.06794 0.89634 1.01673 1.22796 0.98372 0.88400 0.98482 0.92757 0.99009 0.98993 0.93105 0.93086 0.91265 0.94892 0.93006 0.89706 0.89811 0.88736 0.85068 0.83895 0.83524 0.82911 0.84833 0.89431 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.69 5.20 30.60 0.16 -3.53 16 11 C 0.06 2.13 4.56 86.30 0.39 2.52 16 12 N -0.53 -15.79 5.16 -885.53 -4.57 -20.36 16 13 C 0.04 1.06 5.78 86.78 0.50 1.56 16 14 C -0.14 -2.92 6.62 31.98 0.21 -2.71 16 15 C 0.07 1.53 2.73 31.77 0.09 1.61 16 16 H 0.09 1.82 6.25 -2.39 -0.01 1.81 16 17 O -0.32 -7.52 9.86 -92.46 -0.91 -8.43 16 18 C 0.11 2.33 6.67 22.51 0.15 2.48 16 19 C -0.22 -4.16 8.91 22.37 0.20 -3.96 16 20 C -0.09 -1.34 10.04 22.26 0.22 -1.11 16 21 C -0.16 -2.20 10.04 22.28 0.22 -1.98 16 22 C -0.08 -1.17 10.04 22.25 0.22 -0.95 16 23 C -0.17 -3.15 9.99 22.37 0.22 -2.92 16 24 C 0.05 1.20 6.64 86.65 0.58 1.78 16 25 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.05 2.08 7.49 -2.39 -0.02 2.06 16 29 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.42 8.03 -2.39 -0.02 2.40 16 31 H 0.03 1.13 7.85 -2.39 -0.02 1.11 16 32 H 0.05 1.34 7.62 -2.39 -0.02 1.32 16 33 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 1.65 7.76 -2.39 -0.02 1.63 16 36 H 0.13 2.27 5.59 -2.91 -0.02 2.26 16 37 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.09 2.25 8.06 -2.39 -0.02 2.24 16 42 H 0.07 1.67 7.55 -2.38 -0.02 1.66 16 Total: -1.00 -66.35 341.14 1.82 -64.53 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.98 Total: 11.16 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 4.02 Total: -36.54 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -4.29 Total: -77.44 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.91 Total: -8.43 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.35 1.82 -64.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374214469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.895 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds