Wall clock time and date at job start Mon Mar 30 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 112.84560 * 2 1 4 4 C 1.53782 * 113.61513 * 228.80676 * 2 1 3 5 5 C 1.53954 * 87.01605 * 220.04761 * 4 2 1 6 6 N 1.46900 * 113.74336 * 139.94488 * 5 4 2 7 7 C 1.46893 * 111.00315 * 107.39925 * 6 5 4 8 8 C 1.50702 * 109.47248 * 180.02562 * 7 6 5 9 9 C 1.38329 * 119.96660 * 269.72464 * 8 7 6 10 10 C 1.38277 * 120.13926 * 179.76759 * 9 8 7 11 11 C 1.38123 * 120.06908 * 0.50690 * 10 9 8 12 12 C 1.38857 * 119.92786 * 359.74914 * 11 10 9 13 13 O 1.35756 * 120.06806 * 179.97438 * 12 11 10 14 14 C 1.34830 * 116.99506 * 354.48807 * 13 12 11 15 15 H 1.07992 * 120.00625 * 5.05784 * 14 13 12 16 16 C 1.38655 * 119.99663 * 185.06026 * 14 13 12 17 17 N 1.31560 * 119.99796 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00215 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47104 * 89.99679 * 18 16 14 20 20 H 1.48499 * 109.47151 * 209.99887 * 18 16 14 21 21 H 1.48499 * 109.46638 * 329.99963 * 18 16 14 22 22 C 1.38074 * 119.96707 * 89.99922 * 8 7 6 23 23 C 1.53771 * 113.61402 * 131.19269 * 2 1 3 24 24 H 1.09000 * 109.46783 * 50.33678 * 1 2 3 25 25 H 1.08997 * 109.46778 * 170.33227 * 1 2 3 26 26 H 1.08999 * 109.47047 * 290.33593 * 1 2 3 27 27 H 1.08997 * 109.47391 * 69.67034 * 3 2 1 28 28 H 1.09001 * 109.46767 * 189.66844 * 3 2 1 29 29 H 1.08998 * 109.47529 * 309.66602 * 3 2 1 30 30 H 1.08999 * 113.61440 * 334.56443 * 4 2 1 31 31 H 1.08994 * 113.61703 * 105.47217 * 4 2 1 32 32 H 1.09004 * 113.53764 * 270.81045 * 5 4 2 33 33 H 1.00907 * 110.99908 * 231.35724 * 6 5 4 34 34 H 1.08996 * 109.47188 * 299.99761 * 7 6 5 35 35 H 1.09007 * 109.47283 * 60.00035 * 7 6 5 36 36 H 1.07999 * 119.92637 * 359.97438 * 9 8 7 37 37 H 1.07997 * 119.96625 * 180.25462 * 10 9 8 38 38 H 1.07996 * 120.03708 * 179.72618 * 11 10 9 39 39 H 0.97008 * 119.99968 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.03461 * 359.95942 * 22 8 7 41 41 H 1.08997 * 113.61768 * 254.53110 * 23 2 1 42 42 H 1.09006 * 113.61278 * 25.43967 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 -1.0603 5 6 3.1924 -1.3135 0.0013 6 7 3.5335 -2.7423 0.0039 7 6 4.8765 -2.9640 -0.5484 8 6 5.1903 -4.4379 -0.5300 9 6 5.8090 -4.9989 0.5727 10 6 6.0943 -6.3517 0.5953 11 6 5.7713 -7.1453 -0.4881 12 6 5.1549 -6.5842 -1.5986 13 8 4.8368 -7.3614 -2.6652 14 6 5.2478 -8.6451 -2.6314 15 1 5.7317 -9.0341 -1.7477 16 6 5.0494 -9.4657 -3.7312 17 7 4.4596 -8.9919 -4.8075 18 14 5.6183 -11.2444 -3.6843 19 1 4.5239 -12.1004 -3.1601 20 1 5.9780 -11.6854 -5.0559 21 1 6.8051 -11.3612 -2.7994 22 6 4.8650 -5.2259 -1.6161 23 6 2.1460 -0.9279 1.0602 24 1 -0.3633 0.6559 -0.7911 25 1 -0.3633 -1.0131 -0.1726 26 1 -0.3633 0.3571 0.9636 27 1 1.9362 1.8835 0.9636 28 1 3.1988 1.3514 -0.1726 29 1 1.6607 1.9995 -0.7910 30 1 1.4946 -1.7522 -1.3507 31 1 2.5651 -0.3970 -1.9149 32 1 4.0711 -0.6686 0.0007 33 1 3.4554 -3.1310 0.9318 34 1 4.9123 -2.5981 -1.5745 35 1 5.6102 -2.4284 0.0542 36 1 6.0669 -4.3795 1.4190 37 1 6.5737 -6.7875 1.4593 38 1 5.9983 -8.2010 -0.4716 39 1 4.3204 -9.5662 -5.5769 40 1 4.3853 -4.7867 -2.4783 41 1 2.5650 -0.3969 1.9149 42 1 1.4945 -1.7522 1.3506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395173975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:28 Heat of formation + Delta-G solvation = 5.679432 kcal Electronic energy + Delta-G solvation = -20417.479760 eV Core-core repulsion = 17363.252270 eV Total energy + Delta-G solvation = -3054.227490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88597 -38.97372 -36.78790 -34.59587 -32.24835 -31.02259 -29.35794 -28.52936 -27.62308 -25.86373 -25.44628 -24.37619 -21.58812 -21.20822 -20.58186 -18.36571 -17.61434 -16.90672 -15.89936 -15.41766 -15.06074 -14.85812 -14.53745 -14.33577 -14.02573 -13.56077 -13.55472 -13.33464 -12.99806 -12.83894 -12.63827 -12.25765 -11.97118 -11.94260 -11.71961 -11.49760 -11.29609 -11.09796 -10.93143 -10.76359 -10.72511 -10.54745 -10.44527 -10.20107 -10.07877 -9.29426 -8.81307 -8.31961 -8.01889 -7.19707 -6.41011 -4.00100 2.16033 2.40730 3.14885 3.15649 3.20514 3.99480 4.26942 4.33932 4.47919 4.64523 4.73522 4.82761 5.10034 5.10580 5.19528 5.26788 5.41016 5.43295 5.50931 5.62439 5.63223 5.65695 5.73531 5.77020 5.79177 5.82953 5.90943 5.95843 5.99044 6.07590 6.21819 6.32323 6.37473 6.41435 6.70900 6.96390 7.10722 7.19729 7.33961 7.38388 7.47806 7.54035 7.86347 8.04005 9.04604 9.75827 10.77139 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028156 B = 0.003157 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.223051 B = 8866.594673 C = 9520.357668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.128 4.128 4 C -0.117 4.117 5 C 0.059 3.941 6 N -0.670 5.670 7 C 0.106 3.894 8 C -0.048 4.048 9 C -0.208 4.208 10 C -0.076 4.076 11 C -0.233 4.233 12 C 0.152 3.848 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.863 5.863 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.166 4.166 23 C -0.134 4.134 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.342 0.658 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.269 0.731 40 H 0.117 0.883 41 H 0.063 0.937 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 15.720 10.526 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C -0.185 4.185 4 C -0.156 4.156 5 C -0.051 4.051 6 N -0.301 5.301 7 C -0.022 4.022 8 C -0.049 4.049 9 C -0.227 4.227 10 C -0.094 4.094 11 C -0.252 4.252 12 C 0.099 3.901 13 O -0.082 6.082 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.186 4.186 23 C -0.172 4.172 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.161 0.839 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.143 0.857 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.350 15.552 9.478 18.518 hybrid contribution 0.920 -0.699 0.812 1.412 sum -2.430 14.854 10.290 18.232 Atomic orbital electron populations 1.21703 0.94099 1.01984 1.01288 1.21673 0.95326 0.94484 0.97759 1.21596 1.00535 0.94754 1.01604 1.23224 0.97867 0.98412 0.96068 1.23022 0.95885 0.88821 0.97326 1.60599 1.27562 1.13259 1.28686 1.20845 0.88465 0.92761 1.00136 1.19174 0.97965 0.93855 0.93864 1.20417 1.08440 0.95190 0.98685 1.20683 0.98185 0.93538 0.97029 1.21177 1.08111 1.00828 0.95133 1.19362 0.92054 0.90827 0.87898 1.83985 1.66529 1.22095 1.35622 1.21312 1.39796 0.83643 1.02015 0.89153 1.25278 0.96798 1.00101 0.94357 1.70046 1.39340 1.36502 1.03940 0.85725 0.79045 0.80680 0.78044 1.19907 1.20277 1.19249 1.20025 1.07600 0.91075 0.99884 1.23323 0.98223 0.99365 0.96318 0.92770 0.92272 0.92893 0.92623 0.92550 0.92421 0.89075 0.91976 0.91359 0.83863 0.90584 0.94986 0.88124 0.87614 0.85684 0.92077 0.86531 0.91862 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.18 37.16 0.34 -0.79 16 2 C -0.09 -0.83 1.39 -153.70 -0.21 -1.05 16 3 C -0.13 -1.00 9.07 37.16 0.34 -0.67 16 4 C -0.12 -1.29 7.02 -25.83 -0.18 -1.47 16 5 C 0.06 0.66 3.79 -66.81 -0.25 0.40 16 6 N -0.67 -9.03 6.55 -107.04 -0.70 -9.73 16 7 C 0.11 1.55 5.65 -4.98 -0.03 1.53 16 8 C -0.05 -0.87 5.39 -104.65 -0.56 -1.43 16 9 C -0.21 -3.63 9.70 -39.53 -0.38 -4.01 16 10 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 11 C -0.23 -5.18 9.17 -39.39 -0.36 -5.54 16 12 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 13 O -0.18 -5.21 9.76 0.03 0.00 -5.21 16 14 C -0.39 -11.11 9.49 30.89 0.29 -10.82 16 15 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.65 13.67 55.48 0.76 -24.90 16 18 Si 0.94 20.77 29.55 -169.99 -5.02 15.74 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 C -0.17 -3.62 9.64 -39.40 -0.38 -4.00 16 23 C -0.13 -1.28 6.81 -25.92 -0.18 -1.45 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.53 7.98 -51.93 -0.41 0.12 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.45 7.34 -51.93 -0.38 0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 1.13 7.99 -51.93 -0.41 0.72 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.07 0.73 7.37 -51.93 -0.38 0.35 16 33 H 0.34 4.44 8.54 -39.29 -0.34 4.10 16 34 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.03 0.42 8.07 -51.93 -0.42 0.00 16 36 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 41 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16 42 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -30.25 344.88 -8.78 -39.03 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.69 Total: 6.50 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -2.32 Total: -26.64 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.06 Total: -34.62 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.25 -8.78 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395173975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.712 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds