Wall clock time and date at job start Mon Mar 30 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 112.84560 * 2 1 4 4 C 1.53782 * 113.61513 * 228.80676 * 2 1 3 5 5 C 1.53954 * 87.01605 * 220.04761 * 4 2 1 6 6 N 1.46900 * 113.74336 * 139.94488 * 5 4 2 7 7 C 1.46893 * 111.00315 * 107.39925 * 6 5 4 8 8 C 1.50702 * 109.47248 * 180.02562 * 7 6 5 9 9 C 1.38329 * 119.96660 * 269.72464 * 8 7 6 10 10 C 1.38277 * 120.13926 * 179.76759 * 9 8 7 11 11 C 1.38123 * 120.06908 * 0.50690 * 10 9 8 12 12 C 1.38857 * 119.92786 * 359.74914 * 11 10 9 13 13 O 1.35756 * 120.06806 * 179.97438 * 12 11 10 14 14 C 1.34830 * 116.99506 * 354.48807 * 13 12 11 15 15 H 1.07992 * 120.00625 * 5.05784 * 14 13 12 16 16 C 1.38655 * 119.99663 * 185.06026 * 14 13 12 17 17 N 1.31560 * 119.99796 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00215 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47104 * 89.99679 * 18 16 14 20 20 H 1.48499 * 109.47151 * 209.99887 * 18 16 14 21 21 H 1.48499 * 109.46638 * 329.99963 * 18 16 14 22 22 C 1.38074 * 119.96707 * 89.99922 * 8 7 6 23 23 C 1.53771 * 113.61402 * 131.19269 * 2 1 3 24 24 H 1.09000 * 109.46783 * 50.33678 * 1 2 3 25 25 H 1.08997 * 109.46778 * 170.33227 * 1 2 3 26 26 H 1.08999 * 109.47047 * 290.33593 * 1 2 3 27 27 H 1.08997 * 109.47391 * 69.67034 * 3 2 1 28 28 H 1.09001 * 109.46767 * 189.66844 * 3 2 1 29 29 H 1.08998 * 109.47529 * 309.66602 * 3 2 1 30 30 H 1.08999 * 113.61440 * 334.56443 * 4 2 1 31 31 H 1.08994 * 113.61703 * 105.47217 * 4 2 1 32 32 H 1.09004 * 113.53764 * 270.81045 * 5 4 2 33 33 H 1.00907 * 110.99908 * 231.35724 * 6 5 4 34 34 H 1.08996 * 109.47188 * 299.99761 * 7 6 5 35 35 H 1.09007 * 109.47283 * 60.00035 * 7 6 5 36 36 H 1.07999 * 119.92637 * 359.97438 * 9 8 7 37 37 H 1.07997 * 119.96625 * 180.25462 * 10 9 8 38 38 H 1.07996 * 120.03708 * 179.72618 * 11 10 9 39 39 H 0.97008 * 119.99968 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.03461 * 359.95942 * 22 8 7 41 41 H 1.08997 * 113.61768 * 254.53110 * 23 2 1 42 42 H 1.09006 * 113.61278 * 25.43967 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 -1.0603 5 6 3.1924 -1.3135 0.0013 6 7 3.5335 -2.7423 0.0039 7 6 4.8765 -2.9640 -0.5484 8 6 5.1903 -4.4379 -0.5300 9 6 5.8090 -4.9989 0.5727 10 6 6.0943 -6.3517 0.5953 11 6 5.7713 -7.1453 -0.4881 12 6 5.1549 -6.5842 -1.5986 13 8 4.8368 -7.3614 -2.6652 14 6 5.2478 -8.6451 -2.6314 15 1 5.7317 -9.0341 -1.7477 16 6 5.0494 -9.4657 -3.7312 17 7 4.4596 -8.9919 -4.8075 18 14 5.6183 -11.2444 -3.6843 19 1 4.5239 -12.1004 -3.1601 20 1 5.9780 -11.6854 -5.0559 21 1 6.8051 -11.3612 -2.7994 22 6 4.8650 -5.2259 -1.6161 23 6 2.1460 -0.9279 1.0602 24 1 -0.3633 0.6559 -0.7911 25 1 -0.3633 -1.0131 -0.1726 26 1 -0.3633 0.3571 0.9636 27 1 1.9362 1.8835 0.9636 28 1 3.1988 1.3514 -0.1726 29 1 1.6607 1.9995 -0.7910 30 1 1.4946 -1.7522 -1.3507 31 1 2.5651 -0.3970 -1.9149 32 1 4.0711 -0.6686 0.0007 33 1 3.4554 -3.1310 0.9318 34 1 4.9123 -2.5981 -1.5745 35 1 5.6102 -2.4284 0.0542 36 1 6.0669 -4.3795 1.4190 37 1 6.5737 -6.7875 1.4593 38 1 5.9983 -8.2010 -0.4716 39 1 4.3204 -9.5662 -5.5769 40 1 4.3853 -4.7867 -2.4783 41 1 2.5650 -0.3969 1.9149 42 1 1.4945 -1.7522 1.3506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395173975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:28 Heat of formation + Delta-G solvation = -12.505996 kcal Electronic energy + Delta-G solvation = -20418.268340 eV Core-core repulsion = 17363.252270 eV Total energy + Delta-G solvation = -3055.016069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89830 -40.54484 -38.48711 -35.80280 -34.27316 -32.28810 -30.86638 -29.79906 -28.25959 -27.42013 -26.68039 -25.75861 -23.22202 -22.26571 -22.08225 -19.55177 -19.10651 -18.70392 -16.95865 -16.71326 -16.40639 -16.33856 -16.02038 -15.71631 -15.43322 -14.93822 -14.72168 -14.56937 -14.15746 -14.05056 -13.64393 -13.60523 -13.55937 -13.03889 -12.94977 -12.67649 -12.50555 -12.41220 -12.31544 -12.18218 -12.11451 -11.88743 -11.60087 -11.20053 -10.99508 -10.90968 -10.80092 -9.67660 -9.30048 -8.97114 -8.46297 -6.15092 0.53760 0.75376 1.34627 1.44428 1.52628 2.18130 2.79954 3.12185 3.40260 3.52584 3.58912 3.70464 3.88171 3.96626 4.10371 4.13355 4.32612 4.38938 4.41601 4.50830 4.60421 4.67844 4.76643 4.81325 4.81660 4.90091 4.97363 4.98354 5.05628 5.10629 5.13495 5.19167 5.23567 5.27101 5.31514 5.54925 5.61311 5.67985 5.74427 5.78391 6.03610 6.17128 6.27631 6.50926 6.98158 7.80311 8.77250 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028156 B = 0.003157 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.223051 B = 8866.594673 C = 9520.357668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.127 4.127 5 C 0.060 3.940 6 N -0.685 5.685 7 C 0.112 3.888 8 C -0.038 4.038 9 C -0.183 4.183 10 C -0.071 4.071 11 C -0.245 4.245 12 C 0.112 3.888 13 O -0.235 6.235 14 C -0.414 4.414 15 H 0.102 0.898 16 C -0.025 4.025 17 N -0.922 5.922 18 Si 1.020 2.980 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.252 1.252 22 C -0.185 4.185 23 C -0.127 4.127 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.347 0.653 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.118 0.882 39 H 0.272 0.728 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 17.140 13.805 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 C -0.183 4.183 4 C -0.165 4.165 5 C -0.050 4.050 6 N -0.317 5.317 7 C -0.016 4.016 8 C -0.039 4.039 9 C -0.202 4.202 10 C -0.089 4.089 11 C -0.265 4.265 12 C 0.062 3.938 13 O -0.142 6.142 14 C -0.490 4.490 15 H 0.119 0.881 16 C -0.222 4.222 17 N -0.561 5.561 18 Si 0.839 3.161 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.176 1.176 22 C -0.205 4.205 23 C -0.164 4.164 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.167 0.833 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.198 17.017 12.810 21.413 hybrid contribution 0.570 -0.857 -0.001 1.029 sum -1.628 16.160 12.808 20.684 Atomic orbital electron populations 1.21700 0.93788 1.01492 1.02104 1.21670 0.95623 0.94915 0.96339 1.21593 1.00468 0.93760 1.02470 1.23241 0.98096 0.98460 0.96752 1.23100 0.96469 0.87440 0.97971 1.60521 1.26833 1.15195 1.29123 1.20790 0.89960 0.90195 1.00652 1.19598 0.96184 0.95501 0.92579 1.20986 1.05046 0.95103 0.99047 1.21137 0.97027 0.93890 0.96818 1.21307 1.08406 1.01100 0.95680 1.19913 0.93972 0.91754 0.88195 1.83948 1.69255 1.22877 1.38138 1.21830 1.40210 0.84077 1.02863 0.88113 1.26621 0.96678 1.05305 0.93576 1.70201 1.42042 1.38715 1.05123 0.84573 0.79119 0.73872 0.78541 1.18782 1.19563 1.17585 1.20200 1.08510 0.90639 1.01108 1.23265 0.97423 0.99241 0.96509 0.92342 0.93406 0.91741 0.91404 0.92475 0.92075 0.91280 0.92176 0.90208 0.83348 0.91334 0.92038 0.83448 0.83569 0.86441 0.91877 0.88129 0.90222 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.18 71.98 0.66 -1.42 16 2 C -0.08 -1.38 1.39 -51.66 -0.07 -1.45 16 3 C -0.13 -1.64 9.07 71.98 0.65 -0.99 16 4 C -0.13 -2.70 7.02 31.18 0.22 -2.48 16 5 C 0.06 1.19 3.79 45.50 0.17 1.36 16 6 N -0.68 -17.09 6.55 -492.55 -3.23 -20.32 16 7 C 0.11 3.01 5.65 85.56 0.48 3.49 16 8 C -0.04 -1.31 5.39 -19.88 -0.11 -1.42 16 9 C -0.18 -5.62 9.70 22.30 0.22 -5.40 16 10 C -0.07 -2.43 10.04 22.25 0.22 -2.20 16 11 C -0.25 -10.94 9.17 22.39 0.21 -10.74 16 12 C 0.11 5.78 6.65 22.58 0.15 5.93 16 13 O -0.24 -14.69 9.76 -22.81 -0.22 -14.92 16 14 C -0.41 -24.75 9.49 67.92 0.64 -24.10 16 15 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 16 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 17 N -0.92 -58.00 13.67 21.61 0.30 -57.71 16 18 Si 1.02 43.68 29.55 68.60 2.03 45.71 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 21 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 22 C -0.18 -8.33 9.64 22.39 0.22 -8.11 16 23 C -0.13 -2.09 6.81 31.12 0.21 -1.88 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.84 7.98 -2.39 -0.02 0.82 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.74 7.34 -2.39 -0.02 0.72 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.77 7.99 -2.39 -0.02 1.75 16 31 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 32 H 0.08 1.44 7.37 -2.38 -0.02 1.43 16 33 H 0.35 8.00 8.54 -89.69 -0.77 7.24 16 34 H 0.07 1.95 8.08 -2.39 -0.02 1.93 16 35 H 0.06 1.32 8.07 -2.38 -0.02 1.30 16 36 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.12 5.31 5.64 -2.91 -0.02 5.30 16 39 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 40 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.08 1.08 8.10 -2.39 -0.02 1.06 16 42 H 0.08 1.48 8.10 -2.38 -0.02 1.46 16 Total: -1.00 -71.18 344.88 3.45 -67.73 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.23 Total: 29.88 kcal Atomic # 6 Polarization: -54.72 SS G_CDS: 4.34 Total: -50.38 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -2.93 Total: -78.03 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.22 Total: -14.92 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -71.18 3.45 -67.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395173975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.228 kcal (2) G-P(sol) polarization free energy of solvation -71.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds