Wall clock time and date at job start Mon Mar 30 2020 01:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 112.84775 * 2 1 4 4 C 1.53781 * 113.61615 * 131.19201 * 2 1 3 5 5 C 1.53778 * 87.07635 * 89.11804 * 4 2 1 6 6 N 1.46900 * 113.61551 * 139.98482 * 5 4 2 7 7 C 1.46894 * 111.00594 * 156.52732 * 6 5 4 8 8 C 1.50695 * 109.47570 * 179.97438 * 7 6 5 9 9 C 1.38300 * 119.93634 * 269.73084 * 8 7 6 10 10 C 1.38103 * 120.07235 * 179.72038 * 9 8 7 11 11 C 1.38881 * 119.92859 * 0.56979 * 10 9 8 12 12 O 1.35743 * 120.07033 * 179.67702 * 11 10 9 13 13 C 1.34829 * 117.00323 * 174.48588 * 12 11 10 14 14 H 1.08000 * 119.99772 * 5.06302 * 13 12 11 15 15 C 1.38655 * 120.00285 * 185.06067 * 13 12 11 16 16 N 1.31556 * 119.99986 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99817 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47268 * 60.00314 * 17 15 13 19 19 H 1.48504 * 109.46929 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47219 * 300.00047 * 17 15 13 21 21 C 1.38884 * 119.86119 * 359.70391 * 11 10 9 22 22 C 1.38100 * 119.93123 * 0.02562 * 21 11 10 23 23 C 1.53782 * 87.17690 * 25.39042 * 5 4 2 24 24 H 1.09002 * 109.46947 * 288.80306 * 1 2 3 25 25 H 1.08999 * 109.47456 * 48.80313 * 1 2 3 26 26 H 1.08994 * 109.46784 * 168.80388 * 1 2 3 27 27 H 1.08996 * 109.47352 * 191.19895 * 3 2 1 28 28 H 1.09004 * 109.47209 * 311.19997 * 3 2 1 29 29 H 1.09000 * 109.47133 * 71.19484 * 3 2 1 30 30 H 1.09005 * 113.61220 * 334.57412 * 4 2 1 31 31 H 1.08995 * 113.61376 * 203.66634 * 4 2 1 32 32 H 1.09002 * 113.61782 * 270.79812 * 5 4 2 33 33 H 1.00900 * 110.99661 * 280.48410 * 6 5 4 34 34 H 1.08999 * 109.47153 * 59.99894 * 7 6 5 35 35 H 1.09004 * 109.47166 * 300.00121 * 7 6 5 36 36 H 1.08004 * 119.96372 * 359.97187 * 9 8 7 37 37 H 1.07998 * 120.03412 * 180.26808 * 10 9 8 38 38 H 0.97002 * 119.99992 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.03050 * 179.97438 * 21 11 10 40 40 H 1.08003 * 119.96708 * 180.02562 * 22 21 11 41 41 H 1.09000 * 113.61060 * 89.15149 * 23 5 4 42 42 H 1.08997 * 113.61422 * 220.06045 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 1.0603 5 6 2.0930 -2.0424 0.0020 6 7 3.2773 -2.9116 0.0028 7 6 2.9680 -4.2234 -0.5814 8 6 4.2041 -5.0852 -0.5640 9 6 5.0697 -5.0724 -1.6426 10 6 6.2063 -5.8567 -1.6272 11 6 6.4736 -6.6678 -0.5320 12 8 7.5866 -7.4447 -0.5166 13 6 7.8462 -8.1199 0.6213 14 1 7.1400 -8.0933 1.4379 15 6 9.0197 -8.8482 0.7429 16 7 9.8802 -8.8802 -0.2517 17 14 9.3789 -9.7841 2.3192 18 1 8.3087 -10.7863 2.5547 19 1 10.6867 -10.4769 2.1964 20 1 9.4267 -8.8338 3.4592 21 6 5.5996 -6.6827 0.5472 22 6 4.4676 -5.8919 0.5281 23 6 2.1448 -0.9316 -1.0603 24 1 -0.3633 0.3312 0.9728 25 1 -0.3634 0.6768 -0.7732 26 1 -0.3633 -1.0081 -0.1995 27 1 3.1941 1.3534 -0.1996 28 1 1.6414 2.0077 -0.7733 29 1 1.9599 1.8734 0.9728 30 1 1.4945 -1.1067 1.9157 31 1 3.1591 -0.6484 1.3496 32 1 1.1575 -2.6018 0.0035 33 1 4.0476 -2.4735 -0.4794 34 1 2.6311 -4.0928 -1.6098 35 1 2.1814 -4.7040 0.0003 36 1 4.8585 -4.4453 -2.4962 37 1 6.8840 -5.8429 -2.4679 38 1 10.7010 -9.3900 -0.1667 39 1 5.8046 -7.3127 1.4001 40 1 3.7877 -5.9027 1.3672 41 1 3.1576 -0.6531 -1.3516 42 1 1.4923 -1.1134 -1.9142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395193700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:31 Heat of formation + Delta-G solvation = -12.694742 kcal Electronic energy + Delta-G solvation = -20292.300133 eV Core-core repulsion = 17237.275880 eV Total energy + Delta-G solvation = -3055.024254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.90104 -40.56434 -38.50175 -35.65100 -34.24839 -31.83151 -31.65881 -29.55999 -28.25688 -27.46115 -26.56177 -25.31742 -23.60916 -22.18627 -21.98225 -19.82821 -19.16908 -18.79811 -16.90186 -16.52301 -16.44008 -16.18175 -15.69218 -15.51169 -15.36265 -15.11342 -14.72291 -14.51591 -14.26655 -13.97166 -13.69013 -13.62781 -13.51897 -13.08972 -12.93594 -12.68088 -12.48045 -12.45052 -12.38346 -12.16877 -12.14283 -12.00121 -11.57420 -11.17020 -10.96599 -10.91176 -10.76304 -9.76524 -9.20421 -8.87944 -8.46865 -6.15057 0.61422 0.69229 1.34918 1.45740 1.51252 2.18323 2.79662 3.12063 3.48677 3.53185 3.63388 3.70788 3.94854 3.99553 4.07267 4.17889 4.22357 4.40762 4.50737 4.56829 4.62017 4.73044 4.78458 4.80789 4.86322 4.90579 4.94419 5.01664 5.07548 5.10493 5.16602 5.19318 5.24159 5.29085 5.31742 5.54056 5.58028 5.60616 5.72972 5.84174 6.03425 6.20101 6.30174 6.53299 6.97833 7.78888 8.76250 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037701 B = 0.002819 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.500089 B = 9930.114031 C =10140.584860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C -0.134 4.134 4 C -0.122 4.122 5 C 0.067 3.933 6 N -0.685 5.685 7 C 0.123 3.877 8 C -0.158 4.158 9 C -0.060 4.060 10 C -0.205 4.205 11 C 0.113 3.887 12 O -0.233 6.233 13 C -0.415 4.415 14 H 0.100 0.900 15 C -0.023 4.023 16 N -0.921 5.921 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.258 1.258 21 C -0.244 4.244 22 C -0.051 4.051 23 C -0.157 4.157 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.343 0.657 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.273 0.727 39 H 0.117 0.883 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.770 16.633 1.038 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.191 4.191 4 C -0.160 4.160 5 C -0.043 4.043 6 N -0.316 5.316 7 C -0.005 4.005 8 C -0.159 4.159 9 C -0.078 4.078 10 C -0.224 4.224 11 C 0.063 3.937 12 O -0.140 6.140 13 C -0.491 4.491 14 H 0.118 0.882 15 C -0.220 4.220 16 N -0.560 5.560 17 Si 0.837 3.163 18 H -0.181 1.181 19 H -0.195 1.195 20 H -0.182 1.182 21 C -0.264 4.264 22 C -0.070 4.070 23 C -0.196 4.196 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.162 0.838 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.164 0.836 37 H 0.130 0.870 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.152 0.848 41 H 0.097 0.903 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.508 16.274 1.461 24.688 hybrid contribution 0.752 -0.495 -0.420 0.993 sum -17.756 15.779 1.041 23.777 Atomic orbital electron populations 1.21598 0.92454 1.02091 1.02258 1.21708 0.95979 0.94440 0.96505 1.21704 1.00268 0.95219 1.01925 1.23171 1.00853 0.95165 0.96824 1.23060 0.93367 0.91465 0.96426 1.60469 1.07968 1.03502 1.59627 1.20628 0.93365 0.88429 0.98094 1.19662 0.99385 1.01876 0.95010 1.20884 0.91861 0.96653 0.98425 1.20442 1.01577 1.02010 0.98408 1.19951 0.87558 0.90830 0.95386 1.83935 1.38463 1.53656 1.37909 1.21779 1.06284 1.28162 0.92846 0.88230 1.26591 0.94052 0.98371 1.03025 1.70178 1.10660 1.41361 1.33759 0.84656 0.78360 0.77979 0.75274 1.18123 1.19536 1.18232 1.21259 0.98345 1.06639 1.00127 1.20906 0.94840 0.93483 0.97730 1.23812 1.01231 0.97202 0.97347 0.91989 0.91909 0.92378 0.93011 0.92176 0.92355 0.91508 0.90748 0.88280 0.83826 0.93562 0.90178 0.83627 0.86952 0.91828 0.86560 0.84782 0.90264 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 9.07 71.98 0.65 -0.81 16 2 C -0.09 -1.18 1.39 -51.60 -0.07 -1.25 16 3 C -0.13 -1.74 9.20 71.98 0.66 -1.08 16 4 C -0.12 -2.04 7.03 31.12 0.22 -1.82 16 5 C 0.07 1.15 3.81 45.44 0.17 1.33 16 6 N -0.69 -15.03 6.60 -492.87 -3.25 -18.29 16 7 C 0.12 2.83 5.66 85.56 0.48 3.31 16 8 C -0.16 -4.94 5.40 -19.83 -0.11 -5.04 16 9 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 10 C -0.21 -8.83 9.99 22.39 0.22 -8.61 16 11 C 0.11 5.75 6.65 22.58 0.15 5.90 16 12 O -0.23 -14.31 9.76 -22.66 -0.22 -14.53 16 13 C -0.41 -24.63 9.49 67.92 0.64 -23.98 16 14 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 15 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 16 N -0.92 -57.31 13.67 21.61 0.30 -57.01 16 17 Si 1.02 43.47 29.55 68.60 2.03 45.50 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 21 C -0.24 -10.95 9.17 22.39 0.21 -10.74 16 22 C -0.05 -1.82 9.69 22.25 0.22 -1.60 16 23 C -0.16 -2.35 6.83 31.18 0.21 -2.13 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.66 7.34 -2.39 -0.02 0.64 16 27 H 0.05 0.72 7.96 -2.39 -0.02 0.70 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.10 8.10 -2.38 -0.02 1.08 16 31 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 32 H 0.10 1.61 7.39 -2.39 -0.02 1.59 16 33 H 0.34 7.61 8.20 -89.69 -0.74 6.87 16 34 H 0.05 0.94 8.08 -2.39 -0.02 0.92 16 35 H 0.08 1.73 8.07 -2.38 -0.02 1.71 16 36 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 41 H 0.08 1.25 7.66 -2.39 -0.02 1.23 16 42 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 Total: -1.00 -68.84 344.37 3.46 -65.38 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.27 Total: 28.12 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 4.35 Total: -49.17 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -2.96 Total: -75.30 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.22 Total: -14.53 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.84 3.46 -65.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395193700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.687 kcal (2) G-P(sol) polarization free energy of solvation -68.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds