Wall clock time and date at job start Mon Mar 30 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99688 * 2 1 4 4 H 1.48495 * 109.47509 * 240.00218 * 3 2 1 5 5 H 1.48506 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47045 * 120.00009 * 3 2 1 7 7 C 1.37869 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00317 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00224 * 359.97438 * 7 2 1 10 10 C 1.53113 * 109.52527 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.27973 * 182.37525 * 10 9 7 12 12 N 1.46850 * 109.52093 * 59.18005 * 11 10 9 13 13 C 1.46904 * 110.99980 * 174.16300 * 12 11 10 14 14 C 1.52996 * 109.46985 * 294.03365 * 13 12 11 15 15 H 1.08995 * 109.47184 * 59.71606 * 14 13 12 16 16 O 1.42906 * 109.47153 * 299.71549 * 14 13 12 17 17 C 1.50703 * 109.47171 * 179.71870 * 14 13 12 18 18 C 1.38236 * 119.99832 * 84.72347 * 17 14 13 19 19 C 1.38237 * 119.99715 * 179.81193 * 18 17 14 20 20 C 1.38235 * 120.00072 * 0.39551 * 19 18 17 21 21 C 1.38233 * 119.99661 * 359.86215 * 20 19 18 22 22 C 1.38226 * 120.00175 * 264.99929 * 17 14 13 23 23 C 1.46852 * 111.19935 * 298.25932 * 12 11 10 24 24 C 1.53037 * 109.52432 * 61.74031 * 23 12 11 25 25 H 0.96997 * 120.00601 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.51606 * 300.13238 * 9 7 2 27 27 H 1.09005 * 109.50186 * 62.43914 * 10 9 7 28 28 H 1.08992 * 109.53819 * 302.33785 * 10 9 7 29 29 H 1.09007 * 109.46561 * 299.16641 * 11 10 9 30 30 H 1.08994 * 109.46139 * 179.19073 * 11 10 9 31 31 H 1.08994 * 109.46943 * 54.03382 * 13 12 11 32 32 H 1.08997 * 109.46847 * 174.03016 * 13 12 11 33 33 H 0.96701 * 113.99934 * 300.01033 * 16 14 13 34 34 H 1.08003 * 120.00233 * 359.97438 * 18 17 14 35 35 H 1.08001 * 119.99581 * 180.23179 * 19 18 17 36 36 H 1.08000 * 120.00101 * 179.83463 * 20 19 18 37 37 H 1.08008 * 119.99710 * 179.97438 * 21 20 19 38 38 H 1.08011 * 119.99800 * 359.97438 * 22 17 14 39 39 H 1.08994 * 109.46157 * 181.75782 * 23 12 11 40 40 H 1.08999 * 109.46143 * 301.72528 * 23 12 11 41 41 H 1.08993 * 109.50560 * 180.88237 * 24 23 12 42 42 H 1.09001 * 109.53138 * 60.77936 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2452 -3.6638 -0.0005 11 6 1.4755 -4.9851 -0.0604 12 7 0.6536 -5.0195 -1.2769 13 6 0.0073 -6.3288 -1.4387 14 6 1.0741 -7.3968 -1.6877 15 1 1.7612 -7.4282 -0.8421 16 8 1.7980 -7.0787 -2.8781 17 6 0.4117 -8.7411 -1.8468 18 6 -0.0810 -9.1272 -3.0793 19 6 -0.6852 -10.3618 -3.2261 20 6 -0.8040 -11.2069 -2.1386 21 6 -0.3161 -10.8185 -0.9050 22 6 0.2916 -9.5855 -0.7591 23 6 -0.3402 -3.9384 -1.2771 24 6 0.3753 -2.5859 -1.2535 25 1 -0.4851 0.8400 0.0004 26 1 0.6228 -2.5569 0.8883 27 1 2.8431 -3.6319 0.9104 28 1 2.8998 -3.5843 -0.8684 29 1 0.8319 -5.0705 0.8152 30 1 2.1808 -5.8159 -0.0750 31 1 -0.5481 -6.5741 -0.5335 32 1 -0.6768 -6.2939 -2.2865 33 1 1.2483 -7.0336 -3.6724 34 1 0.0084 -8.4654 -3.9281 35 1 -1.0668 -10.6650 -4.1899 36 1 -1.2785 -12.1704 -2.2527 37 1 -0.4092 -11.4786 -0.0552 38 1 0.6730 -9.2821 0.2048 39 1 -0.9536 -4.0092 -2.1754 40 1 -0.9753 -4.0288 -0.3959 41 1 -0.3626 -1.7839 -1.2379 42 1 0.9999 -2.4885 -2.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397164067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:52 Heat of formation + Delta-G solvation = -31.109612 kcal Electronic energy + Delta-G solvation = -21200.652582 eV Core-core repulsion = 18144.829799 eV Total energy + Delta-G solvation = -3055.822783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87088 -38.26711 -36.54993 -33.76812 -31.95882 -31.10425 -31.00392 -29.80746 -27.74230 -25.40125 -23.36779 -22.73598 -22.12640 -21.36001 -20.61804 -18.55635 -17.72176 -16.38152 -16.08042 -15.80025 -15.28358 -14.94643 -14.49308 -14.35745 -14.19606 -13.67527 -13.44942 -13.20519 -12.94349 -12.69042 -12.33147 -12.27332 -11.89130 -11.52055 -11.30807 -11.29988 -10.97977 -10.86664 -10.77741 -10.47644 -10.16804 -10.05681 -9.84371 -9.38897 -9.12089 -9.00593 -8.79463 -8.67010 -8.25115 -7.69533 -5.93495 -3.98563 1.13391 1.20070 3.35730 3.39829 3.43151 3.55709 4.22309 4.48588 4.52617 4.66860 4.76802 4.82181 4.94549 5.06751 5.20897 5.34819 5.36530 5.38272 5.68350 5.74549 5.77021 5.83273 5.89270 5.96382 6.12435 6.23195 6.25397 6.30193 6.36518 6.45475 6.62183 6.67835 6.78765 6.91408 7.13314 7.20818 7.46504 7.65201 7.66500 7.79389 7.86688 8.09779 8.19716 8.52879 9.04947 9.65579 11.12724 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047685 B = 0.003311 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.043338 B = 8453.844352 C = 8506.714275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.058 3.942 12 N -0.524 5.524 13 C 0.029 3.971 14 C 0.151 3.849 15 H 0.106 0.894 16 O -0.538 6.538 17 C -0.110 4.110 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.111 4.111 23 C 0.058 3.942 24 C -0.103 4.103 25 H 0.259 0.741 26 H 0.019 0.981 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.021 0.979 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.369 0.631 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.054 0.946 40 H 0.021 0.979 41 H 0.092 0.908 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 -20.105 -4.317 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.069 4.069 12 N -0.249 5.249 13 C -0.100 4.100 14 C 0.091 3.909 15 H 0.124 0.876 16 O -0.342 6.342 17 C -0.110 4.110 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.130 4.130 23 C -0.069 4.069 24 C -0.142 4.142 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.216 0.784 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.110 0.890 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.309 -19.866 -4.295 20.456 hybrid contribution -0.728 0.673 0.377 1.061 sum -3.037 -19.194 -3.918 19.823 Atomic orbital electron populations 1.69864 1.05864 1.26362 1.51187 1.24965 0.94837 0.98981 0.95250 0.86696 0.79617 0.83310 0.78575 1.20293 1.21409 1.20399 1.21186 0.92871 0.90693 1.50015 0.92798 1.18676 0.92700 0.91766 0.93883 1.21660 0.98711 0.93630 1.00325 1.22173 0.95860 0.99493 0.89399 1.61937 1.23339 1.01158 1.38457 1.22739 0.95614 0.90800 1.00864 1.20854 0.93016 0.87742 0.89287 0.87611 1.86662 1.37623 1.92902 1.17040 1.20721 0.98862 0.97326 0.94135 1.20919 0.98256 0.96774 0.97004 1.21123 0.99408 0.94271 0.98822 1.21154 1.00300 0.99732 0.93144 1.21144 0.98544 0.96451 0.97557 1.21030 0.99442 0.94053 0.98425 1.22283 0.92984 0.93161 0.98477 1.21653 1.00175 0.92828 0.99496 0.93093 0.96266 0.93301 0.92328 0.96047 0.92333 0.94628 0.90954 0.78401 0.86038 0.86044 0.86208 0.86048 0.85929 0.92795 0.96101 0.89006 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 11.37 55.43 0.63 -25.05 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.21 8.56 -34.44 -0.29 -14.50 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 10 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 11 C 0.06 1.07 5.29 -3.83 -0.02 1.05 16 12 N -0.52 -9.39 4.53 -234.67 -1.06 -10.45 16 13 C 0.03 0.41 4.60 -3.82 -0.02 0.39 16 14 C 0.15 1.94 3.09 -27.88 -0.09 1.86 16 15 H 0.11 1.43 6.33 -51.93 -0.33 1.10 16 16 O -0.54 -7.47 13.01 -35.23 -0.46 -7.93 16 17 C -0.11 -1.24 5.00 -104.63 -0.52 -1.76 16 18 C -0.11 -1.13 9.33 -39.58 -0.37 -1.50 16 19 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 20 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 21 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 22 C -0.11 -1.17 9.68 -39.59 -0.38 -1.55 16 23 C 0.06 1.15 5.46 -3.83 -0.02 1.13 16 24 C -0.10 -2.47 5.12 -26.65 -0.14 -2.61 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.97 6.21 -51.93 -0.32 0.65 16 31 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.07 0.97 7.98 -51.93 -0.41 0.55 16 33 H 0.37 3.93 7.40 45.56 0.34 4.27 16 34 H 0.12 1.02 6.62 -52.48 -0.35 0.67 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 39 H 0.05 0.98 8.01 -51.93 -0.42 0.56 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 2.43 6.18 -51.93 -0.32 2.11 16 42 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -30.27 332.84 -10.38 -40.65 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.00 Total: 3.01 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.48 Total: -21.77 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.43 Total: -35.50 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.46 Total: -7.93 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.27 -10.38 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.539 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds