Wall clock time and date at job start Mon Mar 30 2020 01:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99688 * 2 1 4 4 H 1.48495 * 109.47509 * 240.00218 * 3 2 1 5 5 H 1.48506 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47045 * 120.00009 * 3 2 1 7 7 C 1.37869 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00317 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00224 * 359.97438 * 7 2 1 10 10 C 1.53113 * 109.52527 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.27973 * 182.37525 * 10 9 7 12 12 N 1.46850 * 109.52093 * 59.18005 * 11 10 9 13 13 C 1.46904 * 110.99980 * 174.16300 * 12 11 10 14 14 C 1.52996 * 109.46985 * 294.03365 * 13 12 11 15 15 H 1.08995 * 109.47184 * 59.71606 * 14 13 12 16 16 O 1.42906 * 109.47153 * 299.71549 * 14 13 12 17 17 C 1.50703 * 109.47171 * 179.71870 * 14 13 12 18 18 C 1.38236 * 119.99832 * 84.72347 * 17 14 13 19 19 C 1.38237 * 119.99715 * 179.81193 * 18 17 14 20 20 C 1.38235 * 120.00072 * 0.39551 * 19 18 17 21 21 C 1.38233 * 119.99661 * 359.86215 * 20 19 18 22 22 C 1.38226 * 120.00175 * 264.99929 * 17 14 13 23 23 C 1.46852 * 111.19935 * 298.25932 * 12 11 10 24 24 C 1.53037 * 109.52432 * 61.74031 * 23 12 11 25 25 H 0.96997 * 120.00601 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.51606 * 300.13238 * 9 7 2 27 27 H 1.09005 * 109.50186 * 62.43914 * 10 9 7 28 28 H 1.08992 * 109.53819 * 302.33785 * 10 9 7 29 29 H 1.09007 * 109.46561 * 299.16641 * 11 10 9 30 30 H 1.08994 * 109.46139 * 179.19073 * 11 10 9 31 31 H 1.08994 * 109.46943 * 54.03382 * 13 12 11 32 32 H 1.08997 * 109.46847 * 174.03016 * 13 12 11 33 33 H 0.96701 * 113.99934 * 300.01033 * 16 14 13 34 34 H 1.08003 * 120.00233 * 359.97438 * 18 17 14 35 35 H 1.08001 * 119.99581 * 180.23179 * 19 18 17 36 36 H 1.08000 * 120.00101 * 179.83463 * 20 19 18 37 37 H 1.08008 * 119.99710 * 179.97438 * 21 20 19 38 38 H 1.08011 * 119.99800 * 359.97438 * 22 17 14 39 39 H 1.08994 * 109.46157 * 181.75782 * 23 12 11 40 40 H 1.08999 * 109.46143 * 301.72528 * 23 12 11 41 41 H 1.08993 * 109.50560 * 180.88237 * 24 23 12 42 42 H 1.09001 * 109.53138 * 60.77936 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2452 -3.6638 -0.0005 11 6 1.4755 -4.9851 -0.0604 12 7 0.6536 -5.0195 -1.2769 13 6 0.0073 -6.3288 -1.4387 14 6 1.0741 -7.3968 -1.6877 15 1 1.7612 -7.4282 -0.8421 16 8 1.7980 -7.0787 -2.8781 17 6 0.4117 -8.7411 -1.8468 18 6 -0.0810 -9.1272 -3.0793 19 6 -0.6852 -10.3618 -3.2261 20 6 -0.8040 -11.2069 -2.1386 21 6 -0.3161 -10.8185 -0.9050 22 6 0.2916 -9.5855 -0.7591 23 6 -0.3402 -3.9384 -1.2771 24 6 0.3753 -2.5859 -1.2535 25 1 -0.4851 0.8400 0.0004 26 1 0.6228 -2.5569 0.8883 27 1 2.8431 -3.6319 0.9104 28 1 2.8998 -3.5843 -0.8684 29 1 0.8319 -5.0705 0.8152 30 1 2.1808 -5.8159 -0.0750 31 1 -0.5481 -6.5741 -0.5335 32 1 -0.6768 -6.2939 -2.2865 33 1 1.2483 -7.0336 -3.6724 34 1 0.0084 -8.4654 -3.9281 35 1 -1.0668 -10.6650 -4.1899 36 1 -1.2785 -12.1704 -2.2527 37 1 -0.4092 -11.4786 -0.0552 38 1 0.6730 -9.2821 0.2048 39 1 -0.9536 -4.0092 -2.1754 40 1 -0.9753 -4.0288 -0.3959 41 1 -0.3626 -1.7839 -1.2379 42 1 0.9999 -2.4885 -2.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397164067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:51 Heat of formation + Delta-G solvation = -50.046769 kcal Electronic energy + Delta-G solvation = -21201.473759 eV Core-core repulsion = 18144.829799 eV Total energy + Delta-G solvation = -3056.643959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.77607 -39.62363 -37.68121 -35.55889 -33.39825 -32.39694 -31.72330 -31.47573 -29.10476 -27.08274 -24.76151 -23.71589 -23.42500 -22.82380 -21.67612 -20.35918 -18.61659 -18.39684 -17.05224 -16.79356 -16.63756 -16.30768 -15.98118 -15.62548 -15.16342 -14.93729 -14.67677 -14.41458 -14.27733 -14.16654 -13.93445 -13.61570 -13.06124 -12.93770 -12.81394 -12.64504 -12.55210 -12.24559 -12.12131 -11.99420 -11.88719 -11.80020 -11.35906 -11.00429 -10.74843 -10.66112 -10.36900 -9.81714 -9.64525 -9.14470 -8.07467 -6.20813 0.40403 0.50496 1.41548 1.43086 1.50624 2.44299 2.78127 3.01757 3.19194 3.60003 3.77988 3.89976 4.05997 4.12969 4.19553 4.25048 4.31791 4.34058 4.42788 4.55084 4.60275 4.64254 4.69713 4.77181 4.88845 4.90913 4.98618 5.05605 5.11616 5.17036 5.23740 5.34802 5.55414 5.57284 5.62574 5.63150 5.67336 6.00531 6.02408 6.10975 6.28439 6.31420 6.41661 6.87296 6.90195 7.46720 8.96969 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047685 B = 0.003311 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.043338 B = 8453.844352 C = 8506.714275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.099 4.099 11 C 0.065 3.935 12 N -0.531 5.531 13 C 0.033 3.967 14 C 0.161 3.839 15 H 0.098 0.902 16 O -0.556 6.556 17 C -0.125 4.125 18 C -0.121 4.121 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.126 4.126 23 C 0.069 3.931 24 C -0.094 4.094 25 H 0.260 0.740 26 H -0.012 1.012 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.021 0.979 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.381 0.619 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.014 0.986 41 H 0.062 0.938 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 -21.844 -4.993 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.063 4.063 12 N -0.255 5.255 13 C -0.095 4.095 14 C 0.101 3.899 15 H 0.115 0.885 16 O -0.363 6.363 17 C -0.126 4.126 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.059 4.059 24 C -0.132 4.132 25 H 0.069 0.931 26 H 0.006 0.994 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.231 0.769 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.032 0.968 41 H 0.080 0.920 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.400 -21.624 -4.977 22.319 hybrid contribution -0.721 1.156 0.576 1.479 sum -3.122 -20.468 -4.402 21.168 Atomic orbital electron populations 1.70002 1.07106 1.27125 1.51504 1.25737 0.95711 1.02320 0.94839 0.85691 0.78456 0.79199 0.78776 1.19743 1.20837 1.19740 1.21561 0.92963 0.92327 1.50425 0.93234 1.18648 0.93124 0.92525 0.93054 1.21524 0.98014 0.94107 1.00015 1.22073 0.96145 0.98265 0.89775 1.61873 1.23155 1.02455 1.38034 1.22802 0.96220 0.89004 1.01493 1.20671 0.92236 0.88184 0.88785 0.88458 1.86622 1.38691 1.93038 1.17907 1.20592 1.00148 0.96753 0.95116 1.21155 0.98201 0.97605 0.96974 1.21449 0.98926 0.93855 1.00009 1.21528 0.99566 1.00631 0.92811 1.21437 0.98082 0.96258 0.98637 1.21226 0.99943 0.94700 0.98568 1.22049 0.92899 0.91752 0.99153 1.21406 0.99133 0.94642 0.98060 0.93062 0.99401 0.92987 0.93280 0.96092 0.89895 0.94301 0.89701 0.76934 0.84808 0.83901 0.83858 0.84134 0.85472 0.90759 0.96808 0.92004 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.97 11.37 21.44 0.24 -53.73 16 2 C 0.01 0.70 5.31 84.65 0.45 1.15 16 3 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.53 -30.55 8.56 25.60 0.22 -30.33 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.04 2.34 2.16 -11.46 -0.02 2.32 16 10 C -0.10 -4.31 5.32 30.64 0.16 -4.14 16 11 C 0.07 2.35 5.29 86.32 0.46 2.81 16 12 N -0.53 -18.48 4.53 -896.36 -4.06 -22.54 16 13 C 0.03 0.88 4.60 86.30 0.40 1.28 16 14 C 0.16 3.90 3.09 29.85 0.09 3.99 16 15 H 0.10 2.49 6.33 -2.39 -0.02 2.47 16 16 O -0.56 -14.59 13.01 -148.98 -1.94 -16.52 16 17 C -0.13 -2.62 5.00 -19.87 -0.10 -2.72 16 18 C -0.12 -2.19 9.33 22.27 0.21 -1.98 16 19 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 20 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 21 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 22 C -0.13 -2.45 9.68 22.26 0.22 -2.23 16 23 C 0.07 2.72 5.46 86.32 0.47 3.19 16 24 C -0.09 -4.62 5.12 30.65 0.16 -4.46 16 25 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 26 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 27 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.08 2.62 6.21 -2.39 -0.01 2.60 16 31 H 0.04 1.04 8.12 -2.39 -0.02 1.02 16 32 H 0.08 2.07 7.98 -2.39 -0.02 2.06 16 33 H 0.38 7.47 7.40 -74.06 -0.55 6.92 16 34 H 0.13 1.95 6.62 -2.91 -0.02 1.93 16 35 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.07 2.61 8.01 -2.39 -0.02 2.59 16 40 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.06 3.39 6.18 -2.39 -0.01 3.38 16 42 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -65.57 332.84 0.10 -65.47 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.45 Total: 16.98 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 3.38 Total: -36.30 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -3.81 Total: -76.27 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -1.94 Total: -16.52 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -65.57 0.10 -65.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.428 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds