Wall clock time and date at job start Mon Mar 30 2020 01:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99875 * 2 1 4 4 H 1.48494 * 109.47091 * 239.99608 * 3 2 1 5 5 H 1.48500 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46810 * 119.99820 * 3 2 1 7 7 C 1.37876 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53128 * 109.51996 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27762 * 182.37280 * 10 9 7 12 12 N 1.46847 * 109.52279 * 59.18081 * 11 10 9 13 13 C 1.46893 * 111.00304 * 174.15703 * 12 11 10 14 14 C 1.52999 * 109.47541 * 176.15465 * 13 12 11 15 15 H 1.09002 * 109.46674 * 298.79771 * 14 13 12 16 16 O 1.42897 * 109.46943 * 58.79674 * 14 13 12 17 17 C 1.50696 * 109.47230 * 178.79775 * 14 13 12 18 18 C 1.38243 * 119.99939 * 100.00191 * 17 14 13 19 19 C 1.38234 * 120.00207 * 179.97438 * 18 17 14 20 20 C 1.38234 * 119.99665 * 359.95694 * 19 18 17 21 21 C 1.38241 * 120.00150 * 359.97438 * 20 19 18 22 22 C 1.38228 * 120.00051 * 0.07187 * 21 20 19 23 23 C 1.46853 * 111.19935 * 298.25893 * 12 11 10 24 24 C 1.53035 * 109.52376 * 61.73859 * 23 12 11 25 25 H 0.96999 * 120.00276 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.52275 * 300.11974 * 9 7 2 27 27 H 1.09005 * 109.50279 * 62.43556 * 10 9 7 28 28 H 1.09004 * 109.53327 * 302.33766 * 10 9 7 29 29 H 1.08995 * 109.46462 * 299.16558 * 11 10 9 30 30 H 1.09002 * 109.44938 * 179.18881 * 11 10 9 31 31 H 1.09000 * 109.46823 * 56.15051 * 13 12 11 32 32 H 1.09005 * 109.47224 * 296.15649 * 13 12 11 33 33 H 0.96695 * 114.00279 * 60.00369 * 16 14 13 34 34 H 1.08003 * 120.00003 * 359.97148 * 18 17 14 35 35 H 1.07992 * 120.00226 * 179.97438 * 19 18 17 36 36 H 1.07996 * 119.99976 * 179.72222 * 20 19 18 37 37 H 1.08003 * 119.99495 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00360 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.46207 * 181.75874 * 23 12 11 40 40 H 1.09000 * 109.45931 * 301.72571 * 23 12 11 41 41 H 1.08993 * 109.50309 * 180.88327 * 24 23 12 42 42 H 1.09008 * 109.53511 * 60.78374 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6639 0.0005 11 6 1.4751 -4.9851 -0.0593 12 7 0.6532 -5.0196 -1.2757 13 6 0.0069 -6.3287 -1.4376 14 6 -0.9135 -6.2957 -2.6593 15 1 -1.6884 -5.5437 -2.5101 16 8 -0.1500 -5.9687 -3.8221 17 6 -1.5539 -7.6474 -2.8426 18 6 -2.8481 -7.8639 -2.4075 19 6 -3.4357 -9.1037 -2.5761 20 6 -2.7295 -10.1268 -3.1805 21 6 -1.4358 -9.9100 -3.6168 22 6 -0.8479 -8.6705 -3.4474 23 6 -0.3406 -3.9384 -1.2760 24 6 0.3751 -2.5859 -1.2524 25 1 -0.4850 0.8400 -0.0004 26 1 0.6220 -2.5566 0.8889 27 1 2.8429 -3.6321 0.9114 28 1 2.8995 -3.5844 -0.8674 29 1 0.8315 -5.0705 0.8163 30 1 2.1805 -5.8160 -0.0739 31 1 -0.5791 -6.5571 -0.5473 32 1 0.7690 -7.0954 -1.5774 33 1 0.5594 -6.5965 -4.0162 34 1 -3.4001 -7.0643 -1.9359 35 1 -4.4466 -9.2729 -2.2359 36 1 -3.1870 -11.0967 -3.3082 37 1 -0.8840 -10.7095 -4.0887 38 1 0.1630 -8.5011 -3.7879 39 1 -0.9540 -4.0091 -2.1742 40 1 -0.9756 -4.0286 -0.3947 41 1 -0.3628 -1.7839 -1.2368 42 1 0.9997 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397164068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:55 Heat of formation + Delta-G solvation = -29.290759 kcal Electronic energy + Delta-G solvation = -21276.636486 eV Core-core repulsion = 18220.892574 eV Total energy + Delta-G solvation = -3055.743911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88272 -38.28994 -36.51577 -33.74890 -31.96557 -31.08064 -31.00171 -29.76298 -27.74787 -25.39553 -23.38337 -22.71708 -22.16806 -21.43767 -20.44065 -18.54984 -17.71310 -16.38395 -16.04218 -15.79637 -15.30545 -14.92591 -14.38158 -14.37297 -14.21175 -13.69484 -13.49863 -13.08175 -12.93182 -12.74215 -12.40861 -12.15350 -11.88257 -11.54444 -11.43775 -11.28782 -10.89302 -10.80959 -10.69615 -10.50075 -10.16312 -9.99175 -9.84435 -9.36805 -9.10773 -8.92017 -8.89636 -8.60982 -8.23814 -7.69147 -5.92274 -3.97423 1.14460 1.21403 3.36339 3.40616 3.43611 3.56967 4.24065 4.49422 4.55107 4.67769 4.77963 4.82753 4.95065 5.08378 5.21746 5.34687 5.37992 5.40428 5.69840 5.74863 5.77596 5.81081 5.91962 5.98109 6.14727 6.24895 6.26647 6.31409 6.35931 6.46564 6.67473 6.69293 6.80151 6.90194 7.12370 7.22800 7.49587 7.64569 7.71029 7.78565 7.89410 8.11370 8.21919 8.53896 9.05931 9.66571 11.13918 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040845 B = 0.003478 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.356043 B = 8049.690395 C = 8241.226432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.510 4.510 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.060 3.940 12 N -0.524 5.524 13 C 0.029 3.971 14 C 0.146 3.854 15 H 0.110 0.890 16 O -0.537 6.537 17 C -0.109 4.109 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.111 4.111 23 C 0.053 3.947 24 C -0.102 4.102 25 H 0.259 0.741 26 H 0.019 0.981 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.022 0.978 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.369 0.631 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.062 0.938 40 H 0.018 0.982 41 H 0.091 0.909 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 -19.118 -5.324 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.068 4.068 12 N -0.249 5.249 13 C -0.100 4.100 14 C 0.087 3.913 15 H 0.127 0.873 16 O -0.341 6.341 17 C -0.110 4.110 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.129 4.129 23 C -0.074 4.074 24 C -0.140 4.140 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.216 0.784 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.109 0.891 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.008 -18.394 -5.731 19.906 hybrid contribution 0.200 0.175 0.819 0.861 sum -4.808 -18.219 -4.912 19.473 Atomic orbital electron populations 1.69869 1.05856 1.26354 1.51085 1.24966 0.94840 0.98969 0.95242 0.86696 0.79620 0.83347 0.78538 1.20299 1.21398 1.20429 1.21175 0.92826 0.90713 1.50131 0.92844 1.18682 0.92697 0.91691 0.93988 1.21671 0.98709 0.93709 1.00236 1.22129 0.95777 0.99303 0.89549 1.62002 1.23530 1.01343 1.38050 1.22746 0.96941 0.93541 0.96724 1.20940 0.92995 0.91864 0.85535 0.87272 1.86675 1.48717 1.53872 1.44843 1.20711 0.95005 0.96728 0.98570 1.21067 0.94587 0.97515 0.99666 1.21149 0.99933 0.93268 0.99352 1.21155 0.94947 0.99049 0.99148 1.21116 0.95452 0.97026 1.00095 1.20916 0.99849 0.92889 0.99288 1.22368 0.93318 0.93181 0.98554 1.21630 1.00158 0.92912 0.99342 0.93090 0.96284 0.93274 0.92441 0.95952 0.92631 0.94728 0.91072 0.78383 0.85860 0.86027 0.86213 0.86062 0.86070 0.91924 0.96340 0.89077 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 11.37 55.43 0.63 -25.14 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.25 8.57 -34.44 -0.29 -14.55 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.02 16 10 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 11 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 12 N -0.52 -9.42 4.61 -234.67 -1.08 -10.50 16 13 C 0.03 0.42 4.77 -3.83 -0.02 0.40 16 14 C 0.15 1.96 2.62 -27.89 -0.07 1.88 16 15 H 0.11 1.58 6.13 -51.93 -0.32 1.26 16 16 O -0.54 -7.70 13.03 -35.23 -0.46 -8.15 16 17 C -0.11 -1.27 4.97 -104.62 -0.52 -1.79 16 18 C -0.11 -1.21 9.67 -39.58 -0.38 -1.59 16 19 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 20 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 21 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 22 C -0.11 -1.14 9.32 -39.59 -0.37 -1.50 16 23 C 0.05 1.06 5.04 -3.83 -0.02 1.04 16 24 C -0.10 -2.48 5.12 -26.65 -0.14 -2.62 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.37 4.02 7.50 45.56 0.34 4.36 16 34 H 0.12 1.23 8.04 -52.48 -0.42 0.81 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 38 H 0.12 1.02 6.78 -52.49 -0.36 0.66 16 39 H 0.06 1.19 5.87 -51.93 -0.30 0.89 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 42 H 0.04 1.13 8.14 -51.92 -0.42 0.71 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -30.37 332.31 -10.38 -40.75 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.99 Total: 3.40 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -3.46 Total: -21.95 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.45 Total: -35.64 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.46 Total: -8.15 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.37 -10.38 -40.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.457 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds