Wall clock time and date at job start Mon Mar 30 2020 01:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99875 * 2 1 4 4 H 1.48494 * 109.47091 * 239.99608 * 3 2 1 5 5 H 1.48500 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46810 * 119.99820 * 3 2 1 7 7 C 1.37876 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53128 * 109.51996 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27762 * 182.37280 * 10 9 7 12 12 N 1.46847 * 109.52279 * 59.18081 * 11 10 9 13 13 C 1.46893 * 111.00304 * 174.15703 * 12 11 10 14 14 C 1.52999 * 109.47541 * 176.15465 * 13 12 11 15 15 H 1.09002 * 109.46674 * 298.79771 * 14 13 12 16 16 O 1.42897 * 109.46943 * 58.79674 * 14 13 12 17 17 C 1.50696 * 109.47230 * 178.79775 * 14 13 12 18 18 C 1.38243 * 119.99939 * 100.00191 * 17 14 13 19 19 C 1.38234 * 120.00207 * 179.97438 * 18 17 14 20 20 C 1.38234 * 119.99665 * 359.95694 * 19 18 17 21 21 C 1.38241 * 120.00150 * 359.97438 * 20 19 18 22 22 C 1.38228 * 120.00051 * 0.07187 * 21 20 19 23 23 C 1.46853 * 111.19935 * 298.25893 * 12 11 10 24 24 C 1.53035 * 109.52376 * 61.73859 * 23 12 11 25 25 H 0.96999 * 120.00276 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.52275 * 300.11974 * 9 7 2 27 27 H 1.09005 * 109.50279 * 62.43556 * 10 9 7 28 28 H 1.09004 * 109.53327 * 302.33766 * 10 9 7 29 29 H 1.08995 * 109.46462 * 299.16558 * 11 10 9 30 30 H 1.09002 * 109.44938 * 179.18881 * 11 10 9 31 31 H 1.09000 * 109.46823 * 56.15051 * 13 12 11 32 32 H 1.09005 * 109.47224 * 296.15649 * 13 12 11 33 33 H 0.96695 * 114.00279 * 60.00369 * 16 14 13 34 34 H 1.08003 * 120.00003 * 359.97148 * 18 17 14 35 35 H 1.07992 * 120.00226 * 179.97438 * 19 18 17 36 36 H 1.07996 * 119.99976 * 179.72222 * 20 19 18 37 37 H 1.08003 * 119.99495 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00360 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.46207 * 181.75874 * 23 12 11 40 40 H 1.09000 * 109.45931 * 301.72571 * 23 12 11 41 41 H 1.08993 * 109.50309 * 180.88327 * 24 23 12 42 42 H 1.09008 * 109.53511 * 60.78374 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6639 0.0005 11 6 1.4751 -4.9851 -0.0593 12 7 0.6532 -5.0196 -1.2757 13 6 0.0069 -6.3287 -1.4376 14 6 -0.9135 -6.2957 -2.6593 15 1 -1.6884 -5.5437 -2.5101 16 8 -0.1500 -5.9687 -3.8221 17 6 -1.5539 -7.6474 -2.8426 18 6 -2.8481 -7.8639 -2.4075 19 6 -3.4357 -9.1037 -2.5761 20 6 -2.7295 -10.1268 -3.1805 21 6 -1.4358 -9.9100 -3.6168 22 6 -0.8479 -8.6705 -3.4474 23 6 -0.3406 -3.9384 -1.2760 24 6 0.3751 -2.5859 -1.2524 25 1 -0.4850 0.8400 -0.0004 26 1 0.6220 -2.5566 0.8889 27 1 2.8429 -3.6321 0.9114 28 1 2.8995 -3.5844 -0.8674 29 1 0.8315 -5.0705 0.8163 30 1 2.1805 -5.8160 -0.0739 31 1 -0.5791 -6.5571 -0.5473 32 1 0.7690 -7.0954 -1.5774 33 1 0.5594 -6.5965 -4.0162 34 1 -3.4001 -7.0643 -1.9359 35 1 -4.4466 -9.2729 -2.2359 36 1 -3.1870 -11.0967 -3.3082 37 1 -0.8840 -10.7095 -4.0887 38 1 0.1630 -8.5011 -3.7879 39 1 -0.9540 -4.0091 -2.1742 40 1 -0.9756 -4.0286 -0.3947 41 1 -0.3628 -1.7839 -1.2368 42 1 0.9997 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397164068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:54 Heat of formation + Delta-G solvation = -48.547176 kcal Electronic energy + Delta-G solvation = -21277.471507 eV Core-core repulsion = 18220.892574 eV Total energy + Delta-G solvation = -3056.578932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83026 -39.62879 -37.69535 -35.54975 -33.42485 -32.34713 -31.75353 -31.48174 -29.11487 -27.07904 -24.80288 -23.78974 -23.42729 -22.83043 -21.59438 -20.35224 -18.64468 -18.38535 -17.05579 -16.83762 -16.65712 -16.27410 -15.99833 -15.57520 -15.21377 -14.96444 -14.59330 -14.49390 -14.29578 -14.20151 -13.88665 -13.61641 -13.10869 -12.94920 -12.81005 -12.61328 -12.50188 -12.35796 -12.13189 -11.97415 -11.87044 -11.78016 -11.33588 -10.98029 -10.79205 -10.60804 -10.36690 -9.82646 -9.65490 -9.15619 -8.07117 -6.20653 0.39288 0.49578 1.41337 1.43197 1.50591 2.44374 2.78535 3.01592 3.19516 3.58856 3.74017 3.89037 4.04161 4.14583 4.19642 4.24276 4.30563 4.32493 4.42367 4.53487 4.60935 4.63949 4.71373 4.77683 4.88298 4.94395 4.98361 5.05789 5.10657 5.16614 5.24074 5.34613 5.55080 5.58100 5.61671 5.63302 5.66851 6.00589 6.02369 6.10187 6.27789 6.32330 6.41534 6.87125 6.90915 7.46902 8.97352 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040845 B = 0.003478 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.356043 B = 8049.690395 C = 8241.226432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.044 3.956 10 C -0.099 4.099 11 C 0.065 3.935 12 N -0.530 5.530 13 C 0.034 3.966 14 C 0.154 3.846 15 H 0.091 0.909 16 O -0.556 6.556 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.119 4.119 23 C 0.067 3.933 24 C -0.093 4.093 25 H 0.260 0.740 26 H -0.013 1.013 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.019 0.981 30 H 0.089 0.911 31 H 0.037 0.963 32 H 0.094 0.906 33 H 0.383 0.617 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.072 0.928 40 H 0.011 0.989 41 H 0.058 0.942 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 -21.288 -5.880 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.063 4.063 12 N -0.255 5.255 13 C -0.094 4.094 14 C 0.095 3.905 15 H 0.108 0.892 16 O -0.363 6.363 17 C -0.125 4.125 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.060 4.060 24 C -0.131 4.131 25 H 0.069 0.931 26 H 0.005 0.995 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.233 0.767 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.077 0.923 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.420 -20.588 -6.287 21.975 hybrid contribution -0.003 0.792 0.974 1.255 sum -4.423 -19.795 -5.313 20.968 Atomic orbital electron populations 1.70016 1.07182 1.27093 1.51504 1.25765 0.95706 1.02421 0.94863 0.85678 0.78433 0.79136 0.78805 1.19726 1.20946 1.19610 1.21570 0.93008 0.92287 1.50385 0.93053 1.18658 0.93169 0.92723 0.92876 1.21534 0.97947 0.93968 1.00206 1.22074 0.96107 0.98438 0.89635 1.61933 1.23238 1.02472 1.37840 1.22814 0.97643 0.91644 0.97292 1.20734 0.92288 0.92664 0.84856 0.89168 1.86637 1.49523 1.54988 1.45153 1.20554 0.95533 0.96111 1.00345 1.21230 0.94745 0.98403 1.00307 1.21423 1.00905 0.92847 0.99238 1.21536 0.94950 0.99906 0.98004 1.21464 0.95739 0.97223 0.99634 1.21156 1.00617 0.92953 0.98926 1.22072 0.93256 0.91991 0.98699 1.21385 0.99093 0.94594 0.98035 0.93115 0.99488 0.92751 0.93010 0.96226 0.89231 0.94500 0.88794 0.76732 0.85995 0.84233 0.83729 0.83639 0.84532 0.91008 0.97060 0.92316 0.95360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.62 11.37 21.45 0.24 -54.38 16 2 C 0.01 0.61 5.31 84.65 0.45 1.06 16 3 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.53 -30.58 8.57 25.60 0.22 -30.36 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.31 2.16 -11.46 -0.02 2.29 16 10 C -0.10 -4.22 5.32 30.65 0.16 -4.05 16 11 C 0.07 2.29 5.46 86.33 0.47 2.76 16 12 N -0.53 -18.51 4.61 -896.37 -4.13 -22.64 16 13 C 0.03 0.91 4.77 86.30 0.41 1.33 16 14 C 0.15 3.99 2.62 29.85 0.08 4.07 16 15 H 0.09 2.64 6.13 -2.39 -0.01 2.62 16 16 O -0.56 -15.35 13.03 -148.98 -1.94 -17.29 16 17 C -0.12 -2.73 4.97 -19.87 -0.10 -2.83 16 18 C -0.13 -2.69 9.67 22.27 0.22 -2.48 16 19 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 20 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 21 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 22 C -0.12 -2.13 9.32 22.27 0.21 -1.92 16 23 C 0.07 2.76 5.04 86.32 0.43 3.19 16 24 C -0.09 -4.66 5.12 30.65 0.16 -4.51 16 25 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 26 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 27 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 2.59 8.12 -2.39 -0.02 2.57 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.38 7.65 7.50 -74.06 -0.56 7.09 16 34 H 0.12 2.44 8.04 -2.91 -0.02 2.42 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 37 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.14 1.91 6.78 -2.91 -0.02 1.89 16 39 H 0.07 2.79 5.87 -2.39 -0.01 2.78 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.06 3.31 6.17 -2.39 -0.01 3.30 16 42 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -66.52 332.31 0.00 -66.53 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.44 Total: 17.61 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.36 Total: -36.69 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -3.89 Total: -77.02 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -1.94 Total: -17.29 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.52 0.00 -66.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.978 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds