Wall clock time and date at job start Mon Mar 30 2020 01:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00321 * 2 1 4 4 H 1.48496 * 109.46924 * 270.00196 * 3 2 1 5 5 H 1.48502 * 109.46676 * 29.99657 * 3 2 1 6 6 H 1.48492 * 109.47070 * 149.99597 * 3 2 1 7 7 C 1.37880 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00240 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99698 * 180.02562 * 7 2 1 10 10 C 1.53128 * 109.51988 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27788 * 177.62154 * 10 9 7 12 12 N 1.46847 * 109.52398 * 300.82399 * 11 10 9 13 13 C 1.46894 * 111.00208 * 185.83987 * 12 11 10 14 14 C 1.50698 * 109.47385 * 169.99334 * 13 12 11 15 15 C 1.38228 * 120.00195 * 270.21139 * 14 13 12 16 16 C 1.38238 * 120.00114 * 180.26174 * 15 14 13 17 17 C 1.38234 * 119.99675 * 359.50218 * 16 15 14 18 18 C 1.50702 * 120.00257 * 180.25732 * 17 16 15 19 19 O 1.42901 * 109.46666 * 90.00139 * 18 17 16 20 20 C 1.38235 * 120.00220 * 0.28720 * 17 16 15 21 21 C 1.38234 * 119.99720 * 89.99924 * 14 13 12 22 22 C 1.46845 * 111.20229 * 61.73805 * 12 11 10 23 23 C 1.53039 * 109.52437 * 298.26115 * 22 12 11 24 24 H 0.97000 * 119.99989 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.52200 * 59.87661 * 9 7 2 26 26 H 1.08995 * 109.50211 * 57.67916 * 10 9 7 27 27 H 1.08998 * 109.53347 * 297.58277 * 10 9 7 28 28 H 1.08998 * 109.46374 * 180.80322 * 11 10 9 29 29 H 1.09002 * 109.45134 * 60.82750 * 11 10 9 30 30 H 1.09010 * 109.47013 * 49.99442 * 13 12 11 31 31 H 1.09000 * 109.46834 * 289.99763 * 13 12 11 32 32 H 1.08004 * 120.00270 * 0.03576 * 15 14 13 33 33 H 1.08002 * 120.00519 * 179.78838 * 16 15 14 34 34 H 1.08993 * 109.47429 * 210.00613 * 18 17 16 35 35 H 1.08998 * 109.46961 * 330.00864 * 18 17 16 36 36 H 0.96705 * 113.99607 * 180.02562 * 19 18 17 37 37 H 1.07996 * 120.00471 * 179.97438 * 20 17 16 38 38 H 1.08001 * 120.00294 * 0.02562 * 21 14 13 39 39 H 1.09001 * 109.46092 * 58.27783 * 22 12 11 40 40 H 1.08996 * 109.46158 * 178.24678 * 22 12 11 41 41 H 1.08997 * 109.50448 * 299.24046 * 23 22 12 42 42 H 1.08997 * 109.50524 * 179.11770 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0232 -2.6374 0.0010 11 6 5.5524 -2.6313 -0.0584 12 7 5.9936 -1.9364 -1.2745 13 6 7.4505 -2.0312 -1.4358 14 6 7.8385 -1.5283 -2.8024 15 6 7.8913 -2.4030 -3.8715 16 6 8.2524 -1.9427 -5.1240 17 6 8.5506 -0.6057 -5.3094 18 6 8.9387 -0.1027 -6.6760 19 8 7.7665 0.3070 -7.3832 20 6 8.4936 0.2698 -4.2412 21 6 8.1372 -0.1914 -2.9878 22 6 5.5542 -0.5353 -1.2746 23 6 4.0250 -0.4788 -1.2516 24 1 -0.4850 0.8400 -0.0004 25 1 3.8754 -0.6783 0.8897 26 1 3.6274 -3.1637 -0.8675 27 1 3.6963 -3.1400 0.9113 28 1 5.9194 -3.6575 -0.0730 29 1 5.9476 -2.1166 0.8175 30 1 7.7610 -3.0708 -1.3296 31 1 7.9407 -1.4260 -0.6732 32 1 7.6540 -3.4467 -3.7276 33 1 8.2970 -2.6267 -5.9586 34 1 9.6155 0.7453 -6.5724 35 1 9.4364 -0.8995 -7.2286 36 1 7.9412 0.6426 -8.2731 37 1 8.7270 1.3143 -4.3860 38 1 8.0930 0.4925 -2.1531 39 1 5.9496 -0.0306 -0.3931 40 1 5.9224 -0.0393 -2.1726 41 1 3.6292 -0.9712 -2.1398 42 1 3.6994 0.5613 -1.2358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397184792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:08 Heat of formation + Delta-G solvation = -24.840437 kcal Electronic energy + Delta-G solvation = -21254.740823 eV Core-core repulsion = 18199.189892 eV Total energy + Delta-G solvation = -3055.550931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.78788 -38.28572 -36.79162 -34.31818 -32.32618 -31.03443 -31.00957 -30.09518 -27.72843 -25.56772 -23.53468 -22.94622 -22.32234 -21.28206 -20.52334 -18.78361 -17.67916 -16.65465 -16.34093 -15.82596 -15.73794 -15.29981 -14.45092 -14.32188 -13.98765 -13.80442 -13.44721 -13.40094 -13.06905 -12.92936 -12.47371 -12.42952 -12.07193 -11.83051 -11.57564 -11.41172 -11.06413 -10.93987 -10.76395 -10.50897 -10.31718 -10.02795 -9.85824 -9.57282 -9.04362 -8.94895 -8.81690 -8.70311 -8.45727 -7.90833 -6.01362 -3.99285 1.21301 1.42084 3.31758 3.40559 3.42810 3.55987 4.28815 4.43676 4.46508 4.67924 4.77810 4.90300 4.99414 5.01352 5.14829 5.29895 5.38456 5.45688 5.54816 5.57208 5.67915 5.73616 5.89803 5.95241 5.96954 6.05915 6.14595 6.23594 6.36919 6.41739 6.49197 6.52141 6.64509 6.78827 6.88842 6.96418 7.00013 7.27712 7.37074 7.44448 7.56554 7.69474 7.84988 8.59814 9.03429 9.62027 11.12288 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019917 B = 0.004597 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.489241 B = 6090.020527 C = 6856.421204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.096 4.096 11 C 0.057 3.943 12 N -0.528 5.528 13 C 0.090 3.910 14 C -0.061 4.061 15 C -0.101 4.101 16 C -0.101 4.101 17 C -0.102 4.102 18 C 0.119 3.881 19 O -0.565 6.565 20 C -0.100 4.100 21 C -0.116 4.116 22 C 0.052 3.948 23 C -0.115 4.115 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.026 0.974 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.378 0.622 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.023 0.977 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.629 -1.611 -9.931 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.070 4.070 12 N -0.252 5.252 13 C -0.038 4.038 14 C -0.062 4.062 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.102 4.102 18 C 0.042 3.958 19 O -0.371 6.371 20 C -0.119 4.119 21 C -0.135 4.135 22 C -0.075 4.075 23 C -0.153 4.153 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.224 0.776 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 20.953 -1.934 -9.744 23.189 hybrid contribution 0.984 1.650 0.098 1.924 sum 21.937 -0.284 -9.646 23.966 Atomic orbital electron populations 1.69903 1.06263 1.26790 1.51268 1.25018 0.94659 0.98967 0.94602 0.86861 0.79784 0.83753 0.77915 1.20540 1.22613 1.19291 1.21071 0.88893 0.94396 1.50340 0.90867 1.19188 0.96618 0.92004 0.92784 1.21492 0.91282 0.99302 1.01285 1.22203 0.98243 0.97222 0.89357 1.61949 1.09409 1.15230 1.38647 1.21061 0.89475 1.00798 0.92459 1.19841 0.97180 0.93474 0.95700 1.20991 0.98911 0.99976 0.92037 1.20990 0.98763 0.94964 0.97168 1.19542 1.02637 0.93964 0.94043 1.20957 0.87011 0.97849 0.90012 1.86637 1.32643 1.85874 1.31927 1.20950 0.99426 0.99006 0.92476 1.21067 0.99875 0.95248 0.97275 1.22283 0.98240 0.87646 0.99379 1.22001 0.91436 0.99870 1.01970 0.92779 0.96124 0.91775 0.92341 0.91788 0.95601 0.90136 0.94402 0.85725 0.86188 0.93013 0.92959 0.77554 0.86262 0.86173 0.95869 0.91480 0.91308 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 2 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 3 Si 0.89 22.62 24.36 -169.99 -4.14 18.48 16 4 H -0.28 -6.97 6.89 56.52 0.39 -6.58 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.27 -6.55 6.53 56.52 0.37 -6.18 16 7 C -0.51 -14.60 9.15 -34.44 -0.31 -14.92 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.01 0.31 1.75 -91.64 -0.16 0.15 16 10 C -0.10 -1.95 5.32 -26.64 -0.14 -2.09 16 11 C 0.06 0.96 5.46 -3.83 -0.02 0.94 16 12 N -0.53 -8.94 4.65 -236.12 -1.10 -10.04 16 13 C 0.09 1.22 5.12 -4.98 -0.03 1.19 16 14 C -0.06 -0.83 4.89 -104.63 -0.51 -1.34 16 15 C -0.10 -1.27 9.70 -39.59 -0.38 -1.66 16 16 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 17 C -0.10 -1.21 5.51 -104.62 -0.58 -1.79 16 18 C 0.12 1.09 7.17 36.01 0.26 1.35 16 19 O -0.57 -5.95 13.64 -35.23 -0.48 -6.43 16 20 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 21 C -0.12 -1.51 7.88 -39.58 -0.31 -1.83 16 22 C 0.05 0.98 5.16 -3.83 -0.02 0.96 16 23 C -0.12 -2.61 4.84 -26.65 -0.13 -2.74 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 26 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.92 8.02 -51.93 -0.42 0.51 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.96 7.93 -51.92 -0.41 0.55 16 31 H 0.04 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.38 1.96 9.12 45.56 0.42 2.37 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.47 7.95 -52.49 -0.42 1.05 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.21 5.75 -51.93 -0.30 0.91 16 41 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 42 H 0.05 1.12 3.38 -51.93 -0.18 0.95 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -33.30 328.69 -9.11 -42.41 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.92 Total: 1.16 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -3.20 Total: -23.03 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.32 Total: -37.54 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.48 Total: -6.43 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.14 Total: 18.48 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.30 -9.11 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397184792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.572 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds