Wall clock time and date at job start Mon Mar 30 2020 01:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00321 * 2 1 4 4 H 1.48496 * 109.46924 * 270.00196 * 3 2 1 5 5 H 1.48502 * 109.46676 * 29.99657 * 3 2 1 6 6 H 1.48492 * 109.47070 * 149.99597 * 3 2 1 7 7 C 1.37880 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00240 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99698 * 180.02562 * 7 2 1 10 10 C 1.53128 * 109.51988 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27788 * 177.62154 * 10 9 7 12 12 N 1.46847 * 109.52398 * 300.82399 * 11 10 9 13 13 C 1.46894 * 111.00208 * 185.83987 * 12 11 10 14 14 C 1.50698 * 109.47385 * 169.99334 * 13 12 11 15 15 C 1.38228 * 120.00195 * 270.21139 * 14 13 12 16 16 C 1.38238 * 120.00114 * 180.26174 * 15 14 13 17 17 C 1.38234 * 119.99675 * 359.50218 * 16 15 14 18 18 C 1.50702 * 120.00257 * 180.25732 * 17 16 15 19 19 O 1.42901 * 109.46666 * 90.00139 * 18 17 16 20 20 C 1.38235 * 120.00220 * 0.28720 * 17 16 15 21 21 C 1.38234 * 119.99720 * 89.99924 * 14 13 12 22 22 C 1.46845 * 111.20229 * 61.73805 * 12 11 10 23 23 C 1.53039 * 109.52437 * 298.26115 * 22 12 11 24 24 H 0.97000 * 119.99989 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.52200 * 59.87661 * 9 7 2 26 26 H 1.08995 * 109.50211 * 57.67916 * 10 9 7 27 27 H 1.08998 * 109.53347 * 297.58277 * 10 9 7 28 28 H 1.08998 * 109.46374 * 180.80322 * 11 10 9 29 29 H 1.09002 * 109.45134 * 60.82750 * 11 10 9 30 30 H 1.09010 * 109.47013 * 49.99442 * 13 12 11 31 31 H 1.09000 * 109.46834 * 289.99763 * 13 12 11 32 32 H 1.08004 * 120.00270 * 0.03576 * 15 14 13 33 33 H 1.08002 * 120.00519 * 179.78838 * 16 15 14 34 34 H 1.08993 * 109.47429 * 210.00613 * 18 17 16 35 35 H 1.08998 * 109.46961 * 330.00864 * 18 17 16 36 36 H 0.96705 * 113.99607 * 180.02562 * 19 18 17 37 37 H 1.07996 * 120.00471 * 179.97438 * 20 17 16 38 38 H 1.08001 * 120.00294 * 0.02562 * 21 14 13 39 39 H 1.09001 * 109.46092 * 58.27783 * 22 12 11 40 40 H 1.08996 * 109.46158 * 178.24678 * 22 12 11 41 41 H 1.08997 * 109.50448 * 299.24046 * 23 22 12 42 42 H 1.08997 * 109.50524 * 179.11770 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0232 -2.6374 0.0010 11 6 5.5524 -2.6313 -0.0584 12 7 5.9936 -1.9364 -1.2745 13 6 7.4505 -2.0312 -1.4358 14 6 7.8385 -1.5283 -2.8024 15 6 7.8913 -2.4030 -3.8715 16 6 8.2524 -1.9427 -5.1240 17 6 8.5506 -0.6057 -5.3094 18 6 8.9387 -0.1027 -6.6760 19 8 7.7665 0.3070 -7.3832 20 6 8.4936 0.2698 -4.2412 21 6 8.1372 -0.1914 -2.9878 22 6 5.5542 -0.5353 -1.2746 23 6 4.0250 -0.4788 -1.2516 24 1 -0.4850 0.8400 -0.0004 25 1 3.8754 -0.6783 0.8897 26 1 3.6274 -3.1637 -0.8675 27 1 3.6963 -3.1400 0.9113 28 1 5.9194 -3.6575 -0.0730 29 1 5.9476 -2.1166 0.8175 30 1 7.7610 -3.0708 -1.3296 31 1 7.9407 -1.4260 -0.6732 32 1 7.6540 -3.4467 -3.7276 33 1 8.2970 -2.6267 -5.9586 34 1 9.6155 0.7453 -6.5724 35 1 9.4364 -0.8995 -7.2286 36 1 7.9412 0.6426 -8.2731 37 1 8.7270 1.3143 -4.3860 38 1 8.0930 0.4925 -2.1531 39 1 5.9496 -0.0306 -0.3931 40 1 5.9224 -0.0393 -2.1726 41 1 3.6292 -0.9712 -2.1398 42 1 3.6994 0.5613 -1.2358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397184792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:07 Heat of formation + Delta-G solvation = -48.823912 kcal Electronic energy + Delta-G solvation = -21255.780824 eV Core-core repulsion = 18199.189892 eV Total energy + Delta-G solvation = -3056.590932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79088 -39.59940 -37.59838 -35.90320 -34.05725 -32.47494 -31.97566 -31.54498 -29.00304 -27.02615 -24.81893 -24.20062 -23.52967 -22.80625 -21.50477 -20.47201 -18.84036 -18.36350 -17.38995 -17.14748 -16.69876 -16.26255 -16.14380 -15.60175 -15.34188 -14.90252 -14.80477 -14.63969 -14.48159 -14.25073 -13.97950 -13.63295 -13.39130 -13.31308 -12.89692 -12.77067 -12.58748 -12.17247 -12.11883 -11.89274 -11.76039 -11.68229 -11.38982 -10.98430 -10.96357 -10.82016 -10.62635 -9.78933 -9.64663 -9.17612 -8.30820 -6.33375 0.30902 0.51881 1.28041 1.31367 1.42437 2.30690 2.63255 3.04667 3.20015 3.63411 3.84008 3.88558 4.09368 4.11824 4.14315 4.19238 4.21237 4.29026 4.39714 4.51279 4.57968 4.59934 4.60333 4.71040 4.72625 4.79147 4.82070 4.93922 4.95638 5.09461 5.15572 5.19456 5.25694 5.46812 5.52764 5.65884 5.66507 5.71624 5.77010 6.08583 6.16676 6.26064 6.32592 6.73742 6.92578 7.31750 8.86505 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019917 B = 0.004597 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.489241 B = 6090.020527 C = 6856.421204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.270 1.270 5 H -0.297 1.297 6 H -0.247 1.247 7 C -0.517 4.517 8 H 0.032 0.968 9 C 0.012 3.988 10 C -0.093 4.093 11 C 0.065 3.935 12 N -0.540 5.540 13 C 0.094 3.906 14 C -0.078 4.078 15 C -0.110 4.110 16 C -0.110 4.110 17 C -0.112 4.112 18 C 0.118 3.882 19 O -0.593 6.593 20 C -0.112 4.112 21 C -0.128 4.128 22 C 0.063 3.937 23 C -0.113 4.113 24 H 0.265 0.735 25 H 0.019 0.981 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.398 0.602 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.804 -1.151 -10.582 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.171 1.171 7 C -0.555 4.555 8 H 0.051 0.949 9 C -0.007 4.007 10 C -0.131 4.131 11 C -0.062 4.062 12 N -0.265 5.265 13 C -0.033 4.033 14 C -0.079 4.079 15 C -0.129 4.129 16 C -0.128 4.128 17 C -0.113 4.113 18 C 0.041 3.959 19 O -0.403 6.403 20 C -0.130 4.130 21 C -0.146 4.146 22 C -0.065 4.065 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.053 0.947 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.249 0.751 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 24.162 -1.488 -10.412 26.352 hybrid contribution -0.054 1.410 0.236 1.431 sum 24.107 -0.077 -10.175 26.167 Atomic orbital electron populations 1.70053 1.08170 1.27908 1.53127 1.25882 0.95411 1.02949 0.94355 0.85833 0.79148 0.78900 0.78507 1.19654 1.22444 1.17118 1.21433 0.91734 0.92859 1.49443 0.94934 1.19156 0.93358 0.94785 0.93367 1.21400 0.94435 0.96554 1.00693 1.22108 0.95034 0.99245 0.89788 1.61872 1.12032 1.13870 1.38706 1.21108 0.86941 1.02344 0.92880 1.19918 0.98228 0.93861 0.95875 1.21210 0.98870 1.00512 0.92269 1.21282 0.98446 0.95535 0.97541 1.19969 1.01806 0.94057 0.95428 1.21056 0.86823 0.99233 0.88821 1.86562 1.33767 1.86235 1.33697 1.21217 0.99385 0.99931 0.92457 1.21233 1.00170 0.95365 0.97863 1.22075 0.94928 0.89292 1.00191 1.21854 0.94681 0.98461 1.00049 0.92629 0.96284 0.93317 0.92252 0.88688 0.94713 0.88130 0.93402 0.84778 0.84521 0.91240 0.90976 0.75117 0.84899 0.85711 0.95113 0.90607 0.93273 0.94659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.49 13.96 21.45 0.30 -61.19 16 2 C 0.01 0.64 5.45 84.66 0.46 1.10 16 3 Si 0.95 46.84 24.36 68.60 1.67 48.52 16 4 H -0.27 -12.90 6.89 99.48 0.69 -12.21 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.25 -11.28 6.53 99.48 0.65 -10.63 16 7 C -0.52 -30.58 9.15 25.60 0.23 -30.34 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 9 C 0.01 0.59 1.75 -11.46 -0.02 0.57 16 10 C -0.09 -3.72 5.32 30.65 0.16 -3.56 16 11 C 0.07 2.01 5.46 86.33 0.47 2.49 16 12 N -0.54 -16.85 4.65 -900.94 -4.19 -21.04 16 13 C 0.09 2.25 5.12 85.56 0.44 2.68 16 14 C -0.08 -1.92 4.89 -19.87 -0.10 -2.01 16 15 C -0.11 -2.54 9.70 22.27 0.22 -2.33 16 16 C -0.11 -2.38 9.70 22.27 0.22 -2.17 16 17 C -0.11 -2.42 5.51 -19.87 -0.11 -2.53 16 18 C 0.12 1.84 7.17 71.24 0.51 2.35 16 19 O -0.59 -11.19 13.64 -148.98 -2.03 -13.22 16 20 C -0.11 -2.51 9.70 22.27 0.22 -2.29 16 21 C -0.13 -3.06 7.88 22.27 0.18 -2.88 16 22 C 0.06 2.22 5.16 86.33 0.45 2.67 16 23 C -0.11 -5.01 4.84 30.65 0.15 -4.86 16 24 H 0.26 16.02 8.31 -92.71 -0.77 15.24 16 25 H 0.02 0.92 7.19 -2.39 -0.02 0.90 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.09 2.38 8.02 -2.39 -0.02 2.36 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 2.00 7.93 -2.38 -0.02 1.98 16 31 H 0.05 1.07 8.07 -2.39 -0.02 1.05 16 32 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 33 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 35 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 36 H 0.40 3.24 9.12 -74.05 -0.68 2.57 16 37 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.12 2.76 7.95 -2.91 -0.02 2.74 16 39 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 2.56 5.75 -2.39 -0.01 2.54 16 41 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.04 1.63 3.38 -2.39 -0.01 1.63 16 Total: -1.00 -73.22 328.69 -0.53 -73.76 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.25 Total: 14.29 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 3.47 Total: -41.12 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -3.89 Total: -82.23 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -2.03 Total: -13.22 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.67 Total: 48.52 kcal Total: -73.22 -0.53 -73.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397184792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.933 kcal (2) G-P(sol) polarization free energy of solvation -73.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds