Wall clock time and date at job start Mon Mar 30 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50642 * 60.08041 * 9 7 2 11 11 C 1.53122 * 109.50317 * 299.99839 * 9 7 2 12 12 C 1.53120 * 109.15950 * 182.40396 * 11 9 7 13 13 C 1.53038 * 109.27722 * 57.65781 * 12 11 9 14 14 N 1.46857 * 109.52383 * 300.81821 * 13 12 11 15 15 C 1.46900 * 111.00128 * 185.84347 * 14 13 12 16 16 C 1.53000 * 109.46739 * 293.95021 * 15 14 13 17 17 H 1.08999 * 109.47462 * 305.00531 * 16 15 14 18 18 O 1.42908 * 109.47122 * 65.00615 * 16 15 14 19 19 C 1.50703 * 109.46974 * 184.99897 * 16 15 14 20 20 C 1.38236 * 120.00267 * 279.72821 * 19 16 15 21 21 C 1.38232 * 119.99821 * 179.81039 * 20 19 16 22 22 C 1.38235 * 120.00186 * 0.42029 * 21 20 19 23 23 C 1.38234 * 119.99947 * 359.81122 * 22 21 20 24 24 C 1.38236 * 120.00010 * 359.97438 * 23 22 21 25 25 C 1.46844 * 111.19564 * 61.74210 * 14 13 12 26 26 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 27 27 H 1.08995 * 109.51986 * 302.30781 * 11 9 7 28 28 H 1.09001 * 109.52196 * 62.44059 * 11 9 7 29 29 H 1.08998 * 109.50433 * 177.59203 * 12 11 9 30 30 H 1.08997 * 109.50671 * 297.71818 * 12 11 9 31 31 H 1.09000 * 109.46729 * 60.83435 * 13 12 11 32 32 H 1.08999 * 109.46527 * 180.81546 * 13 12 11 33 33 H 1.09000 * 109.47383 * 53.94742 * 15 14 13 34 34 H 1.08995 * 109.47093 * 173.95746 * 15 14 13 35 35 H 0.96692 * 113.99869 * 59.99550 * 18 16 15 36 36 H 1.08001 * 119.99926 * 0.02562 * 20 19 16 37 37 H 1.08002 * 119.99765 * 180.21406 * 21 20 19 38 38 H 1.07998 * 120.00234 * 179.79399 * 22 21 20 39 39 H 1.08001 * 120.00273 * 179.97438 * 23 22 21 40 40 H 1.08006 * 119.99942 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.45948 * 178.24568 * 25 14 13 42 42 H 1.09001 * 109.46423 * 58.27695 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6256 -2.5622 -0.8790 11 6 0.3700 -2.5752 1.2615 12 6 -0.3457 -3.9285 1.2902 13 6 0.6944 -5.0508 1.2639 14 7 1.5112 -4.9346 0.0490 15 6 2.4286 -6.0746 -0.0796 16 6 3.4550 -6.0336 1.0543 17 1 3.9595 -5.0674 1.0530 18 8 2.7906 -6.2225 2.3053 19 6 4.4692 -7.1301 0.8537 20 6 4.1682 -8.4268 1.2266 21 6 5.0970 -9.4332 1.0390 22 6 6.3301 -9.1415 0.4865 23 6 6.6329 -7.8441 0.1180 24 6 5.7024 -6.8384 0.3015 25 6 2.2449 -3.6629 0.0222 26 1 -0.4850 0.8401 -0.0041 27 1 0.9908 -2.4726 2.1515 28 1 -0.3672 -1.7727 1.2370 29 1 -0.9415 -4.0059 2.1997 30 1 -0.9962 -4.0148 0.4199 31 1 1.3358 -4.9723 2.1417 32 1 0.1876 -6.0159 1.2696 33 1 1.8627 -7.0046 -0.0240 34 1 2.9441 -6.0197 -1.0384 35 1 2.3193 -7.0637 2.3773 36 1 3.2060 -8.6541 1.6614 37 1 4.8605 -10.4468 1.3272 38 1 7.0570 -9.9272 0.3430 39 1 7.5965 -7.6161 -0.3133 40 1 5.9392 -5.8246 0.0140 41 1 2.8642 -3.6198 -0.8737 42 1 2.8791 -3.5908 0.9058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397681499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:45 Heat of formation + Delta-G solvation = -28.068765 kcal Electronic energy + Delta-G solvation = -21628.515011 eV Core-core repulsion = 18572.824090 eV Total energy + Delta-G solvation = -3055.690922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99193 -38.39994 -36.34277 -33.52832 -32.19973 -31.18107 -30.99233 -29.77329 -27.33833 -24.91199 -24.13799 -22.70816 -21.81248 -21.24507 -20.87147 -18.48218 -17.72079 -16.41982 -15.96362 -15.78417 -15.28254 -14.81037 -14.46997 -14.25470 -14.18741 -13.74009 -13.48529 -13.19382 -12.85226 -12.54411 -12.32437 -12.10869 -11.75019 -11.59898 -11.36598 -11.10460 -11.00186 -10.92748 -10.73622 -10.59634 -10.34668 -9.94160 -9.65970 -9.38751 -9.07129 -8.99289 -8.90243 -8.64313 -8.25056 -7.39919 -5.93070 -3.99145 1.19134 1.25165 3.33433 3.40063 3.43100 3.61750 4.37588 4.47629 4.52951 4.69505 4.75219 4.82949 4.95873 5.18163 5.25190 5.36865 5.37737 5.44175 5.74423 5.79262 5.84997 5.90987 6.00650 6.06309 6.24605 6.30426 6.35383 6.43729 6.48557 6.50711 6.62364 6.83001 6.84877 6.88950 7.03737 7.29727 7.46552 7.58486 7.74779 7.79896 7.88760 8.14384 8.23547 8.53249 9.04878 9.64827 11.12825 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.004298 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.806131 B = 6513.452889 C = 7319.903239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.032 0.968 11 C -0.109 4.109 12 C -0.119 4.119 13 C 0.047 3.953 14 N -0.531 5.531 15 C 0.033 3.967 16 C 0.105 3.895 17 H 0.113 0.887 18 O -0.544 6.544 19 C -0.104 4.104 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.111 4.111 25 C 0.063 3.937 26 H 0.259 0.741 27 H 0.030 0.970 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.367 0.633 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.056 0.944 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.922 -17.667 1.969 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.050 0.950 11 C -0.147 4.147 12 C -0.157 4.157 13 C -0.080 4.080 14 N -0.253 5.253 15 C -0.096 4.096 16 C 0.045 3.955 17 H 0.131 0.869 18 O -0.350 6.350 19 C -0.106 4.106 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.136 4.136 24 C -0.129 4.129 25 C -0.064 4.064 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.215 0.785 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.074 0.926 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.674 -16.937 1.684 18.670 hybrid contribution 0.896 0.308 0.492 1.068 sum 8.570 -16.628 2.176 18.833 Atomic orbital electron populations 1.69899 1.05830 1.26238 1.50741 1.24933 0.94813 0.98901 0.95187 0.86643 0.79874 0.83721 0.78026 1.20748 1.21287 1.20027 1.21153 0.92773 0.90745 1.50598 0.92926 1.18648 0.92603 0.90243 0.94852 0.94960 1.21623 0.99960 0.94741 0.98404 1.21690 0.97336 0.96824 0.99807 1.22345 0.95738 0.97764 0.92146 1.62284 1.22585 1.02029 1.38419 1.22854 0.93393 0.95769 0.97609 1.21863 0.91554 0.96900 0.85216 0.86936 1.86704 1.70177 1.42086 1.36023 1.20690 0.95879 0.95474 0.98519 1.20864 0.99529 0.92446 1.00411 1.21093 0.93995 0.99019 0.99556 1.21138 0.96983 0.96680 0.99667 1.21157 0.99384 0.93080 0.99953 1.21087 0.93037 0.99701 0.99054 1.22353 0.96709 0.88726 0.98595 0.93112 0.95139 0.89298 0.93739 0.92636 0.91913 0.93372 0.91196 0.90221 0.78547 0.86359 0.86155 0.86255 0.86035 0.85779 0.92598 0.95718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 11.35 55.43 0.63 -25.03 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.24 8.56 -34.44 -0.29 -14.54 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.79 16 12 C -0.12 -2.40 6.09 -26.65 -0.16 -2.56 16 13 C 0.05 0.84 4.62 -3.83 -0.02 0.83 16 14 N -0.53 -9.75 4.86 -234.66 -1.14 -10.89 16 15 C 0.03 0.48 5.16 -3.82 -0.02 0.46 16 16 C 0.11 1.45 2.89 -27.88 -0.08 1.37 16 17 H 0.11 1.78 6.10 -51.93 -0.32 1.46 16 18 O -0.54 -7.57 9.86 -35.23 -0.35 -7.92 16 19 C -0.10 -1.26 4.97 -104.62 -0.52 -1.78 16 20 C -0.11 -1.20 9.32 -39.58 -0.37 -1.57 16 21 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 22 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.11 -1.29 9.67 -39.58 -0.38 -1.67 16 25 C 0.06 1.34 4.06 -3.83 -0.02 1.33 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.15 5.54 -51.93 -0.29 0.86 16 32 H 0.05 0.74 8.06 -51.93 -0.42 0.33 16 33 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.37 3.78 7.50 45.56 0.34 4.12 16 36 H 0.12 1.01 6.78 -52.49 -0.36 0.65 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.37 8.04 -52.48 -0.42 0.95 16 41 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 42 H 0.02 0.54 6.49 -51.93 -0.34 0.20 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -30.09 326.79 -10.33 -40.42 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.88 Total: 4.83 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -3.49 Total: -22.78 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.51 Total: -35.92 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.35 Total: -7.92 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.09 -10.33 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397681499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.353 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds