Wall clock time and date at job start Mon Mar 30 2020 01:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50642 * 60.08041 * 9 7 2 11 11 C 1.53122 * 109.50317 * 299.99839 * 9 7 2 12 12 C 1.53120 * 109.15950 * 182.40396 * 11 9 7 13 13 C 1.53038 * 109.27722 * 57.65781 * 12 11 9 14 14 N 1.46857 * 109.52383 * 300.81821 * 13 12 11 15 15 C 1.46900 * 111.00128 * 185.84347 * 14 13 12 16 16 C 1.53000 * 109.46739 * 293.95021 * 15 14 13 17 17 H 1.08999 * 109.47462 * 305.00531 * 16 15 14 18 18 O 1.42908 * 109.47122 * 65.00615 * 16 15 14 19 19 C 1.50703 * 109.46974 * 184.99897 * 16 15 14 20 20 C 1.38236 * 120.00267 * 279.72821 * 19 16 15 21 21 C 1.38232 * 119.99821 * 179.81039 * 20 19 16 22 22 C 1.38235 * 120.00186 * 0.42029 * 21 20 19 23 23 C 1.38234 * 119.99947 * 359.81122 * 22 21 20 24 24 C 1.38236 * 120.00010 * 359.97438 * 23 22 21 25 25 C 1.46844 * 111.19564 * 61.74210 * 14 13 12 26 26 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 27 27 H 1.08995 * 109.51986 * 302.30781 * 11 9 7 28 28 H 1.09001 * 109.52196 * 62.44059 * 11 9 7 29 29 H 1.08998 * 109.50433 * 177.59203 * 12 11 9 30 30 H 1.08997 * 109.50671 * 297.71818 * 12 11 9 31 31 H 1.09000 * 109.46729 * 60.83435 * 13 12 11 32 32 H 1.08999 * 109.46527 * 180.81546 * 13 12 11 33 33 H 1.09000 * 109.47383 * 53.94742 * 15 14 13 34 34 H 1.08995 * 109.47093 * 173.95746 * 15 14 13 35 35 H 0.96692 * 113.99869 * 59.99550 * 18 16 15 36 36 H 1.08001 * 119.99926 * 0.02562 * 20 19 16 37 37 H 1.08002 * 119.99765 * 180.21406 * 21 20 19 38 38 H 1.07998 * 120.00234 * 179.79399 * 22 21 20 39 39 H 1.08001 * 120.00273 * 179.97438 * 23 22 21 40 40 H 1.08006 * 119.99942 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.45948 * 178.24568 * 25 14 13 42 42 H 1.09001 * 109.46423 * 58.27695 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6256 -2.5622 -0.8790 11 6 0.3700 -2.5752 1.2615 12 6 -0.3457 -3.9285 1.2902 13 6 0.6944 -5.0508 1.2639 14 7 1.5112 -4.9346 0.0490 15 6 2.4286 -6.0746 -0.0796 16 6 3.4550 -6.0336 1.0543 17 1 3.9595 -5.0674 1.0530 18 8 2.7906 -6.2225 2.3053 19 6 4.4692 -7.1301 0.8537 20 6 4.1682 -8.4268 1.2266 21 6 5.0970 -9.4332 1.0390 22 6 6.3301 -9.1415 0.4865 23 6 6.6329 -7.8441 0.1180 24 6 5.7024 -6.8384 0.3015 25 6 2.2449 -3.6629 0.0222 26 1 -0.4850 0.8401 -0.0041 27 1 0.9908 -2.4726 2.1515 28 1 -0.3672 -1.7727 1.2370 29 1 -0.9415 -4.0059 2.1997 30 1 -0.9962 -4.0148 0.4199 31 1 1.3358 -4.9723 2.1417 32 1 0.1876 -6.0159 1.2696 33 1 1.8627 -7.0046 -0.0240 34 1 2.9441 -6.0197 -1.0384 35 1 2.3193 -7.0637 2.3773 36 1 3.2060 -8.6541 1.6614 37 1 4.8605 -10.4468 1.3272 38 1 7.0570 -9.9272 0.3430 39 1 7.5965 -7.6161 -0.3133 40 1 5.9392 -5.8246 0.0140 41 1 2.8642 -3.6198 -0.8737 42 1 2.8791 -3.5908 0.9058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397681499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:44 Heat of formation + Delta-G solvation = -47.148026 kcal Electronic energy + Delta-G solvation = -21629.342350 eV Core-core repulsion = 18572.824090 eV Total energy + Delta-G solvation = -3056.518260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03266 -39.61905 -37.61941 -35.32254 -33.68659 -32.35486 -31.75164 -31.61912 -28.54236 -26.93117 -25.42030 -23.50276 -23.21764 -22.89003 -21.98035 -20.20651 -18.73148 -18.28808 -17.03543 -16.95999 -16.49959 -16.25931 -15.91795 -15.67565 -15.23724 -14.95672 -14.85246 -14.30422 -14.25793 -13.99757 -13.84748 -13.50575 -13.23233 -12.92457 -12.76922 -12.65709 -12.51958 -12.28306 -12.15040 -11.88664 -11.81342 -11.73611 -11.39053 -11.16460 -10.83569 -10.64428 -10.36564 -9.83089 -9.74838 -8.81472 -8.07614 -6.21948 0.40243 0.49180 1.40545 1.41037 1.51394 2.42699 2.83404 3.15535 3.19048 3.50342 3.65628 3.90007 4.08667 4.15221 4.20902 4.27968 4.30983 4.37718 4.45132 4.59548 4.63717 4.69614 4.82452 4.84489 4.92112 5.02365 5.07391 5.08690 5.15741 5.19872 5.25340 5.45152 5.54130 5.55780 5.61365 5.64318 5.66751 5.99168 6.09932 6.13940 6.22017 6.39473 6.47535 6.75437 6.90909 7.45729 8.97015 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.004298 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.806131 B = 6513.452889 C = 7319.903239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.052 3.948 10 H -0.006 1.006 11 C -0.102 4.102 12 C -0.114 4.114 13 C 0.055 3.945 14 N -0.542 5.542 15 C 0.038 3.962 16 C 0.118 3.882 17 H 0.083 0.917 18 O -0.558 6.558 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.132 4.132 25 C 0.081 3.919 26 H 0.260 0.740 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.384 0.616 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.117 0.883 41 H 0.052 0.948 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.836 -20.037 2.466 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.068 0.932 9 C 0.034 3.966 10 H 0.013 0.987 11 C -0.140 4.140 12 C -0.152 4.152 13 C -0.073 4.073 14 N -0.265 5.265 15 C -0.091 4.091 16 C 0.058 3.942 17 H 0.101 0.899 18 O -0.367 6.367 19 C -0.121 4.121 20 C -0.137 4.137 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.047 4.047 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.234 0.766 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.135 0.865 41 H 0.070 0.930 42 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.592 -19.335 2.180 21.270 hybrid contribution 0.623 0.978 0.332 1.206 sum 9.215 -18.357 2.512 20.693 Atomic orbital electron populations 1.70045 1.07189 1.27034 1.51229 1.25732 0.95672 1.02341 0.94771 0.85620 0.78701 0.79432 0.78285 1.20001 1.20806 1.19397 1.21531 0.92921 0.92296 1.50807 0.93188 1.18582 0.93014 0.91417 0.93629 0.98743 1.21426 0.98974 0.96399 0.97197 1.21629 0.97818 0.95325 1.00417 1.22317 0.94974 0.98197 0.91771 1.62192 1.23465 1.01815 1.38992 1.22891 0.93296 0.94919 0.97970 1.21482 0.91565 0.96391 0.84784 0.89907 1.86659 1.70512 1.43564 1.35925 1.20542 0.95679 0.95713 1.00173 1.21131 1.00756 0.91805 1.00026 1.21466 0.93664 1.00057 0.98745 1.21522 0.97602 0.96888 0.98532 1.21412 0.99793 0.93245 0.99928 1.21217 0.93744 1.00074 0.99987 1.21959 0.95433 0.89187 0.98091 0.93081 0.96302 0.92634 0.91585 0.93640 0.92076 0.89798 0.88515 0.90350 0.76588 0.84366 0.83526 0.83730 0.84412 0.86486 0.92963 0.96419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.61 11.35 21.45 0.24 -54.36 16 2 C 0.01 0.77 5.30 84.66 0.45 1.22 16 3 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -30.80 8.56 25.60 0.22 -30.59 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.77 2.26 -11.49 -0.03 2.75 16 10 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 11 C -0.10 -5.11 5.02 30.68 0.15 -4.95 16 12 C -0.11 -4.57 6.09 30.65 0.19 -4.38 16 13 C 0.05 1.84 4.62 86.32 0.40 2.24 16 14 N -0.54 -19.55 4.86 -896.34 -4.35 -23.90 16 15 C 0.04 1.03 5.16 86.30 0.45 1.48 16 16 C 0.12 3.15 2.89 29.85 0.09 3.24 16 17 H 0.08 2.69 6.10 -2.39 -0.01 2.68 16 18 O -0.56 -14.52 9.86 -148.98 -1.47 -15.99 16 19 C -0.12 -2.74 4.97 -19.86 -0.10 -2.83 16 20 C -0.12 -2.16 9.32 22.27 0.21 -1.95 16 21 C -0.12 -1.90 10.05 22.27 0.22 -1.67 16 22 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 23 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 24 C -0.13 -3.00 9.67 22.27 0.22 -2.79 16 25 C 0.08 3.54 4.06 86.33 0.35 3.89 16 26 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 3.14 6.15 -2.39 -0.01 3.12 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 2.14 5.54 -2.39 -0.01 2.13 16 32 H 0.08 2.29 8.06 -2.39 -0.02 2.27 16 33 H 0.10 2.16 8.06 -2.39 -0.02 2.14 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.38 6.70 7.50 -74.06 -0.56 6.15 16 36 H 0.14 1.84 6.78 -2.91 -0.02 1.82 16 37 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.12 2.68 8.04 -2.91 -0.02 2.66 16 41 H 0.05 2.26 8.12 -2.39 -0.02 2.25 16 42 H 0.02 0.79 6.49 -2.39 -0.02 0.78 16 Total: -1.00 -66.98 326.79 0.15 -66.83 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.45 Total: 18.87 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 3.26 Total: -38.27 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -4.11 Total: -78.26 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.47 Total: -15.99 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -66.98 0.15 -66.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397681499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.681 kcal (2) G-P(sol) polarization free energy of solvation -66.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds