Wall clock time and date at job start Mon Mar 30 2020 01:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00249 * 2 1 4 4 H 1.48505 * 109.47014 * 264.78099 * 3 2 1 5 5 H 1.48502 * 109.47217 * 24.77803 * 3 2 1 6 6 H 1.48492 * 109.47267 * 144.78069 * 3 2 1 7 7 C 1.37881 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99891 * 5.76764 * 7 2 1 9 9 C 1.50701 * 120.00105 * 185.77239 * 7 2 1 10 10 H 1.09000 * 109.53639 * 335.27039 * 9 7 2 11 11 C 1.53123 * 109.50116 * 95.36522 * 9 7 2 12 12 C 1.53120 * 109.15690 * 177.59198 * 11 9 7 13 13 C 1.53035 * 109.28225 * 302.34948 * 12 11 9 14 14 N 1.46846 * 109.52257 * 59.17773 * 13 12 11 15 15 C 1.46905 * 110.99779 * 174.16071 * 14 13 12 16 16 C 1.53002 * 109.46940 * 294.21164 * 15 14 13 17 17 H 1.08999 * 109.47160 * 60.00320 * 16 15 14 18 18 O 1.42902 * 109.46980 * 299.99553 * 16 15 14 19 19 C 1.50702 * 109.46763 * 180.02562 * 16 15 14 20 20 C 1.38236 * 120.00438 * 84.72404 * 19 16 15 21 21 C 1.38236 * 120.00168 * 179.74292 * 20 19 16 22 22 C 1.38237 * 119.99587 * 0.52845 * 21 20 19 23 23 C 1.38238 * 120.00106 * 359.75107 * 22 21 20 24 24 C 1.38228 * 119.99971 * 359.97230 * 23 22 21 25 25 C 1.46841 * 111.19823 * 298.25729 * 14 13 12 26 26 H 0.97002 * 119.99814 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.52685 * 297.50064 * 11 9 7 28 28 H 1.09003 * 109.51898 * 57.63111 * 11 9 7 29 29 H 1.09007 * 109.50148 * 62.29481 * 12 11 9 30 30 H 1.09004 * 109.50268 * 182.40576 * 12 11 9 31 31 H 1.09005 * 109.45781 * 299.16115 * 13 12 11 32 32 H 1.08996 * 109.46168 * 179.19807 * 13 12 11 33 33 H 1.09000 * 109.47008 * 54.20813 * 15 14 13 34 34 H 1.08999 * 109.46933 * 174.21345 * 15 14 13 35 35 H 0.96692 * 114.00536 * 300.00542 * 18 16 15 36 36 H 1.07999 * 119.99480 * 359.97438 * 20 19 16 37 37 H 1.07999 * 119.99868 * 180.29609 * 21 20 19 38 38 H 1.08000 * 119.99548 * 179.76688 * 22 21 20 39 39 H 1.08000 * 119.99563 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.99372 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.46260 * 181.75547 * 25 14 13 42 42 H 1.08997 * 109.46524 * 301.73967 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9827 -1.3943 5 1 1.3959 2.6820 0.5868 6 1 3.4872 1.4745 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1270 -0.0930 9 6 3.5058 -1.1974 0.1318 10 1 3.9043 -0.2449 -0.2175 11 6 3.8902 -1.4049 1.5994 12 6 5.4157 -1.4671 1.7153 13 6 5.9443 -2.5967 0.8284 14 7 5.5510 -2.3515 -0.5650 15 6 6.1575 -3.3414 -1.4651 16 6 7.6768 -3.1604 -1.4726 17 1 8.0645 -3.3012 -0.4637 18 8 7.9974 -1.8440 -1.9269 19 6 8.2990 -4.1755 -2.3965 20 6 8.3886 -3.9141 -3.7510 21 6 8.9642 -4.8429 -4.5977 22 6 9.4401 -6.0380 -4.0914 23 6 9.3452 -6.3019 -2.7378 24 6 8.7749 -5.3706 -1.8904 25 6 4.0897 -2.3348 -0.7092 26 1 -0.4850 0.8401 0.0004 27 1 3.5131 -0.5741 2.1958 28 1 3.4581 -2.3382 1.9606 29 1 5.8443 -0.5188 1.3910 30 1 5.6944 -1.6574 2.7518 31 1 5.5260 -3.5464 1.1622 32 1 7.0314 -2.6344 0.8978 33 1 5.9130 -4.3455 -1.1186 34 1 5.7699 -3.2006 -2.4741 35 1 7.6824 -1.6484 -2.8199 36 1 8.0124 -2.9824 -4.1471 37 1 9.0385 -4.6366 -5.6551 38 1 9.8863 -6.7653 -4.7535 39 1 9.7167 -7.2358 -2.3424 40 1 8.7012 -5.5767 -0.8327 41 1 3.8299 -2.1823 -1.7567 42 1 3.6802 -3.2856 -0.3681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397681501.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:48 Heat of formation + Delta-G solvation = -31.419440 kcal Electronic energy + Delta-G solvation = -21334.008918 eV Core-core repulsion = 18278.172700 eV Total energy + Delta-G solvation = -3055.836218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.89688 -38.40952 -36.62920 -33.58535 -32.20906 -31.50552 -31.03770 -30.25804 -27.72866 -25.03666 -24.10894 -22.77843 -21.97444 -21.52059 -20.48418 -18.75521 -17.75963 -16.83553 -16.11333 -15.89048 -15.33124 -15.13172 -14.49060 -14.35152 -14.03938 -13.64680 -13.52958 -13.34641 -13.16254 -12.83211 -12.49570 -12.47168 -12.05687 -11.87635 -11.44733 -11.32189 -11.15290 -11.01555 -10.84104 -10.62757 -10.16046 -10.08695 -9.78346 -9.50714 -9.29437 -9.12884 -8.94964 -8.81975 -8.46772 -7.75710 -6.05437 -4.04672 1.12362 1.19294 3.34782 3.42302 3.47813 3.54622 4.17921 4.46993 4.50291 4.65397 4.74801 4.79368 4.92446 5.03320 5.17362 5.25400 5.32728 5.36605 5.54143 5.61726 5.74586 5.76060 5.79636 5.89193 5.91390 6.06094 6.20902 6.24641 6.29597 6.35117 6.43129 6.44130 6.54248 6.71415 6.77895 6.87405 6.94888 7.33954 7.49602 7.58233 7.61818 7.75322 7.89896 8.55504 8.99284 9.58712 11.07786 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.003945 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.508105 B = 7096.245795 C = 7297.311380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.513 4.513 8 H 0.070 0.930 9 C 0.021 3.979 10 H 0.040 0.960 11 C -0.112 4.112 12 C -0.119 4.119 13 C 0.061 3.939 14 N -0.532 5.532 15 C 0.029 3.971 16 C 0.151 3.849 17 H 0.105 0.895 18 O -0.540 6.540 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.112 4.112 25 C 0.073 3.927 26 H 0.263 0.737 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.371 0.629 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.963 -10.108 -5.549 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.551 4.551 8 H 0.088 0.912 9 C 0.002 3.998 10 H 0.058 0.942 11 C -0.150 4.150 12 C -0.157 4.157 13 C -0.067 4.067 14 N -0.256 5.256 15 C -0.099 4.099 16 C 0.091 3.909 17 H 0.122 0.878 18 O -0.344 6.344 19 C -0.111 4.111 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.054 4.054 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.218 0.782 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 19.224 -9.484 -5.087 22.032 hybrid contribution -0.273 -0.131 -0.358 0.469 sum 18.951 -9.615 -5.446 21.937 Atomic orbital electron populations 1.69919 1.06390 1.26985 1.50727 1.25053 0.94658 0.99062 0.94208 0.86820 0.80195 0.83384 0.78925 1.20178 1.21853 1.18696 1.20969 0.89274 0.94495 1.50375 0.91201 1.19148 0.95711 0.94373 0.90596 0.94167 1.21863 0.92049 1.00751 1.00366 1.21666 0.98361 0.98502 0.97197 1.22041 0.98949 0.97120 0.88594 1.61978 1.11155 1.47310 1.05160 1.22737 0.94041 0.94522 0.98634 1.20853 0.93038 0.80792 0.96218 0.87762 1.86632 1.80852 1.30396 1.36558 1.20704 0.99028 0.96293 0.95068 1.20930 0.99504 0.99559 0.92889 1.21132 0.98589 0.94114 0.99724 1.21161 1.00330 0.97292 0.95508 1.21138 0.99578 0.99269 0.93747 1.21010 0.98496 0.93527 0.99961 1.22276 0.83290 0.98975 1.00865 0.92703 0.92983 0.93323 0.91845 0.93002 0.95740 0.91928 0.94496 0.90598 0.78188 0.85985 0.86000 0.86190 0.86063 0.86007 0.91583 0.95952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.92 27.02 -169.99 -4.59 17.32 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.33 6.78 56.52 0.38 -5.95 16 7 C -0.51 -14.33 8.86 -34.44 -0.31 -14.64 16 8 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 9 C 0.02 0.50 1.95 -91.69 -0.18 0.32 16 10 H 0.04 0.99 5.25 -51.93 -0.27 0.72 16 11 C -0.11 -2.40 5.27 -26.61 -0.14 -2.54 16 12 C -0.12 -2.12 6.09 -26.65 -0.16 -2.29 16 13 C 0.06 0.99 5.29 -3.84 -0.02 0.97 16 14 N -0.53 -9.24 4.52 -234.67 -1.06 -10.31 16 15 C 0.03 0.41 4.60 -3.82 -0.02 0.40 16 16 C 0.15 1.88 3.09 -27.88 -0.09 1.79 16 17 H 0.10 1.31 6.34 -51.93 -0.33 0.98 16 18 O -0.54 -7.33 13.00 -35.23 -0.46 -7.79 16 19 C -0.11 -1.22 5.00 -104.62 -0.52 -1.75 16 20 C -0.11 -1.13 9.33 -39.58 -0.37 -1.50 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 23 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 24 C -0.11 -1.14 9.68 -39.59 -0.38 -1.53 16 25 C 0.07 1.49 4.72 -3.84 -0.02 1.47 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.91 6.21 -51.93 -0.32 0.58 16 33 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.08 1.04 7.99 -51.93 -0.41 0.63 16 35 H 0.37 3.97 7.39 45.56 0.34 4.31 16 36 H 0.12 1.05 6.62 -52.49 -0.35 0.71 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 41 H 0.07 1.36 8.02 -51.93 -0.42 0.95 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -31.47 332.38 -9.82 -41.28 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.99 Total: 3.10 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -3.49 Total: -21.77 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.29 Total: -37.16 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.46 Total: -7.79 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.59 Total: 17.32 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.47 -9.82 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397681501.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.865 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds