Wall clock time and date at job start Mon Mar 30 2020 01:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99698 * 2 1 4 4 H 1.48505 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46966 * 299.99863 * 3 2 1 6 6 H 1.48497 * 109.47632 * 59.99689 * 3 2 1 7 7 C 1.37877 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99667 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00018 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.53801 * 299.90489 * 9 7 2 11 11 C 1.53116 * 109.50063 * 60.00860 * 9 7 2 12 12 C 1.53120 * 109.15884 * 177.59290 * 11 9 7 13 13 C 1.53039 * 109.27816 * 302.34092 * 12 11 9 14 14 N 1.46850 * 109.52127 * 59.18305 * 13 12 11 15 15 C 1.46903 * 110.99890 * 174.16289 * 14 13 12 16 16 C 1.52997 * 109.47311 * 66.04139 * 15 14 13 17 17 H 1.09001 * 109.46922 * 305.00237 * 16 15 14 18 18 O 1.42905 * 109.46921 * 64.99969 * 16 15 14 19 19 C 1.50698 * 109.47342 * 185.00224 * 16 15 14 20 20 C 1.38241 * 119.99558 * 279.73112 * 19 16 15 21 21 C 1.38234 * 119.99754 * 179.74077 * 20 19 16 22 22 C 1.38243 * 119.99770 * 0.52792 * 21 20 19 23 23 C 1.38233 * 120.00142 * 359.74583 * 22 21 20 24 24 C 1.38227 * 120.00190 * 99.99730 * 19 16 15 25 25 C 1.46849 * 111.19649 * 298.25559 * 14 13 12 26 26 H 0.96993 * 120.00149 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.52488 * 57.68385 * 11 9 7 28 28 H 1.09003 * 109.57528 * 297.52322 * 11 9 7 29 29 H 1.09003 * 109.50409 * 182.40083 * 12 11 9 30 30 H 1.09001 * 109.50659 * 62.28176 * 12 11 9 31 31 H 1.08997 * 109.45891 * 299.16639 * 13 12 11 32 32 H 1.08996 * 109.45290 * 179.18752 * 13 12 11 33 33 H 1.09000 * 109.46601 * 306.04151 * 15 14 13 34 34 H 1.08994 * 109.46766 * 186.04512 * 15 14 13 35 35 H 0.96696 * 114.00036 * 60.00010 * 18 16 15 36 36 H 1.08002 * 120.00204 * 359.97438 * 20 19 16 37 37 H 1.07995 * 120.00167 * 180.28837 * 21 20 19 38 38 H 1.08002 * 119.99953 * 179.76304 * 22 21 20 39 39 H 1.08002 * 120.00209 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00267 * 0.02562 * 24 19 16 41 41 H 1.08997 * 109.46351 * 181.76081 * 25 14 13 42 42 H 1.09004 * 109.46471 * 301.73003 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6257 -2.5590 0.8901 11 6 0.3702 -2.5808 -1.2503 12 6 -0.3455 -3.9342 -1.2731 13 6 0.6947 -5.0564 -1.2418 14 7 1.5113 -4.9348 -0.0273 15 6 2.4289 -6.0742 0.1063 16 6 3.4553 -6.0381 -1.0277 17 1 2.9369 -6.0076 -1.9861 18 8 4.2744 -4.8751 -0.8919 19 6 4.3191 -7.2713 -0.9628 20 6 5.3701 -7.3326 -0.0669 21 6 6.1591 -8.4658 -0.0037 22 6 5.9039 -9.5335 -0.8439 23 6 4.8564 -9.4700 -1.7437 24 6 4.0638 -8.3389 -1.8030 25 6 2.2450 -3.6629 -0.0060 26 1 -0.4850 0.8400 -0.0004 27 1 0.9911 -2.4819 -2.1406 28 1 -0.3678 -1.7789 -1.2299 29 1 -0.9412 -4.0156 -2.1823 30 1 -0.9961 -4.0167 -0.4025 31 1 1.3361 -4.9815 -2.1198 32 1 0.1878 -6.0213 -1.2434 33 1 1.8630 -7.0043 0.0548 34 1 2.9442 -6.0150 1.0649 35 1 4.7664 -4.8353 -0.0604 36 1 5.5724 -6.4966 0.5862 37 1 6.9773 -8.5156 0.6995 38 1 6.5227 -10.4174 -0.7972 39 1 4.6573 -10.3039 -2.4004 40 1 3.2457 -8.2891 -2.5062 41 1 2.8643 -3.6158 0.8897 42 1 2.8792 -3.5946 -0.8899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397681503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:51 Heat of formation + Delta-G solvation = -26.422304 kcal Electronic energy + Delta-G solvation = -21664.795016 eV Core-core repulsion = 18609.175491 eV Total energy + Delta-G solvation = -3055.619526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98077 -38.39927 -36.28022 -33.57423 -32.01482 -31.25930 -30.99968 -29.74487 -27.34880 -24.86792 -24.09480 -22.72014 -21.78248 -21.39057 -20.76134 -18.46685 -17.69409 -16.38052 -15.95602 -15.76888 -15.25225 -14.85763 -14.41701 -14.35513 -14.06162 -13.77770 -13.52120 -13.06772 -12.84488 -12.50175 -12.27086 -12.18362 -11.72609 -11.66767 -11.26986 -11.19254 -10.98955 -10.88505 -10.72263 -10.55509 -10.25709 -9.94345 -9.67288 -9.38137 -9.07886 -8.92539 -8.90008 -8.59927 -8.22395 -7.35480 -5.89714 -3.94784 1.18640 1.24295 3.34683 3.42574 3.46827 3.61298 4.40462 4.51962 4.56868 4.69253 4.75723 4.82254 4.95463 5.16768 5.23579 5.38085 5.40196 5.42979 5.67368 5.79125 5.80428 5.86557 5.90519 6.07091 6.13029 6.29051 6.33723 6.35214 6.49594 6.62271 6.65441 6.81016 6.83226 6.93689 7.16576 7.30760 7.47825 7.71233 7.74499 7.84929 7.91132 8.19173 8.27502 8.59197 9.10124 9.68999 11.16425 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.004232 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.370109 B = 6615.277025 C = 7312.955056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.507 4.507 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.059 3.941 14 N -0.532 5.532 15 C 0.033 3.967 16 C 0.108 3.892 17 H 0.104 0.896 18 O -0.540 6.540 19 C -0.105 4.105 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.113 4.113 25 C 0.056 3.944 26 H 0.257 0.743 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.370 0.630 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.050 0.950 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.947 -17.793 -1.903 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.069 4.069 14 N -0.255 5.255 15 C -0.097 4.097 16 C 0.047 3.953 17 H 0.122 0.878 18 O -0.346 6.346 19 C -0.106 4.106 20 C -0.131 4.131 21 C -0.135 4.135 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.131 4.131 25 C -0.070 4.070 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.218 0.782 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.068 0.932 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.213 -17.515 -2.072 19.055 hybrid contribution 1.235 0.644 -0.186 1.405 sum 8.448 -16.871 -2.258 19.002 Atomic orbital electron populations 1.69911 1.05821 1.26019 1.51230 1.24945 0.94806 0.98899 0.95366 0.86596 0.80189 0.84113 0.77428 1.19854 1.21191 1.21167 1.21209 0.92903 0.90651 1.49872 0.92746 1.18701 0.92753 0.90805 0.94449 0.95368 1.21637 0.99986 0.94519 0.98646 1.21671 0.97140 0.96633 1.00053 1.22062 0.95563 0.98567 0.90675 1.62292 1.23000 1.02681 1.37481 1.22860 0.93714 0.95841 0.97273 1.21738 0.90090 0.81878 1.01573 0.87787 1.86777 1.62455 1.41380 1.43950 1.20714 0.96847 0.96869 0.96139 1.20920 0.95375 0.98202 0.98554 1.21119 0.99540 0.93625 0.99242 1.21139 0.98095 0.98717 0.96542 1.21134 0.95717 0.97963 0.98894 1.21025 0.99779 0.93411 0.98911 1.22608 0.96420 0.87405 1.00614 0.93266 0.95182 0.89277 0.93661 0.92217 0.95659 0.92723 0.90715 0.90761 0.78175 0.86119 0.86074 0.86261 0.86132 0.86065 0.93169 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 11.35 55.43 0.63 -25.23 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.16 8.56 -34.44 -0.29 -14.45 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.32 2.27 -91.69 -0.21 1.11 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.66 5.02 -26.61 -0.13 -2.80 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 13 C 0.06 1.05 5.06 -3.83 -0.02 1.03 16 14 N -0.53 -9.74 4.86 -234.67 -1.14 -10.88 16 15 C 0.03 0.47 5.16 -3.82 -0.02 0.45 16 16 C 0.11 1.48 2.92 -27.89 -0.08 1.40 16 17 H 0.10 1.52 6.32 -51.93 -0.33 1.19 16 18 O -0.54 -8.29 9.63 -35.23 -0.34 -8.62 16 19 C -0.10 -1.25 4.97 -104.63 -0.52 -1.77 16 20 C -0.11 -1.22 9.32 -39.58 -0.37 -1.59 16 21 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 22 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.11 -1.24 9.67 -39.58 -0.38 -1.62 16 25 C 0.06 1.18 3.44 -3.83 -0.01 1.17 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.03 0.45 6.65 -51.93 -0.35 0.10 16 32 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 33 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.37 4.58 7.50 45.56 0.34 4.93 16 36 H 0.12 1.14 6.78 -52.49 -0.36 0.79 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 41 H 0.05 1.05 8.12 -51.93 -0.42 0.63 16 42 H 0.06 1.34 5.58 -51.93 -0.29 1.05 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -30.41 326.83 -10.34 -40.75 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.90 Total: 5.09 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -3.49 Total: -22.64 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.51 Total: -36.11 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.34 Total: -8.62 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.41 -10.34 -40.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397681503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.324 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds