Wall clock time and date at job start Mon Mar 30 2020 01:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99698 * 2 1 4 4 H 1.48505 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46966 * 299.99863 * 3 2 1 6 6 H 1.48497 * 109.47632 * 59.99689 * 3 2 1 7 7 C 1.37877 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99667 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00018 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.53801 * 299.90489 * 9 7 2 11 11 C 1.53116 * 109.50063 * 60.00860 * 9 7 2 12 12 C 1.53120 * 109.15884 * 177.59290 * 11 9 7 13 13 C 1.53039 * 109.27816 * 302.34092 * 12 11 9 14 14 N 1.46850 * 109.52127 * 59.18305 * 13 12 11 15 15 C 1.46903 * 110.99890 * 174.16289 * 14 13 12 16 16 C 1.52997 * 109.47311 * 66.04139 * 15 14 13 17 17 H 1.09001 * 109.46922 * 305.00237 * 16 15 14 18 18 O 1.42905 * 109.46921 * 64.99969 * 16 15 14 19 19 C 1.50698 * 109.47342 * 185.00224 * 16 15 14 20 20 C 1.38241 * 119.99558 * 279.73112 * 19 16 15 21 21 C 1.38234 * 119.99754 * 179.74077 * 20 19 16 22 22 C 1.38243 * 119.99770 * 0.52792 * 21 20 19 23 23 C 1.38233 * 120.00142 * 359.74583 * 22 21 20 24 24 C 1.38227 * 120.00190 * 99.99730 * 19 16 15 25 25 C 1.46849 * 111.19649 * 298.25559 * 14 13 12 26 26 H 0.96993 * 120.00149 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.52488 * 57.68385 * 11 9 7 28 28 H 1.09003 * 109.57528 * 297.52322 * 11 9 7 29 29 H 1.09003 * 109.50409 * 182.40083 * 12 11 9 30 30 H 1.09001 * 109.50659 * 62.28176 * 12 11 9 31 31 H 1.08997 * 109.45891 * 299.16639 * 13 12 11 32 32 H 1.08996 * 109.45290 * 179.18752 * 13 12 11 33 33 H 1.09000 * 109.46601 * 306.04151 * 15 14 13 34 34 H 1.08994 * 109.46766 * 186.04512 * 15 14 13 35 35 H 0.96696 * 114.00036 * 60.00010 * 18 16 15 36 36 H 1.08002 * 120.00204 * 359.97438 * 20 19 16 37 37 H 1.07995 * 120.00167 * 180.28837 * 21 20 19 38 38 H 1.08002 * 119.99953 * 179.76304 * 22 21 20 39 39 H 1.08002 * 120.00209 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00267 * 0.02562 * 24 19 16 41 41 H 1.08997 * 109.46351 * 181.76081 * 25 14 13 42 42 H 1.09004 * 109.46471 * 301.73003 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6257 -2.5590 0.8901 11 6 0.3702 -2.5808 -1.2503 12 6 -0.3455 -3.9342 -1.2731 13 6 0.6947 -5.0564 -1.2418 14 7 1.5113 -4.9348 -0.0273 15 6 2.4289 -6.0742 0.1063 16 6 3.4553 -6.0381 -1.0277 17 1 2.9369 -6.0076 -1.9861 18 8 4.2744 -4.8751 -0.8919 19 6 4.3191 -7.2713 -0.9628 20 6 5.3701 -7.3326 -0.0669 21 6 6.1591 -8.4658 -0.0037 22 6 5.9039 -9.5335 -0.8439 23 6 4.8564 -9.4700 -1.7437 24 6 4.0638 -8.3389 -1.8030 25 6 2.2450 -3.6629 -0.0060 26 1 -0.4850 0.8400 -0.0004 27 1 0.9911 -2.4819 -2.1406 28 1 -0.3678 -1.7789 -1.2299 29 1 -0.9412 -4.0156 -2.1823 30 1 -0.9961 -4.0167 -0.4025 31 1 1.3361 -4.9815 -2.1198 32 1 0.1878 -6.0213 -1.2434 33 1 1.8630 -7.0043 0.0548 34 1 2.9442 -6.0150 1.0649 35 1 4.7664 -4.8353 -0.0604 36 1 5.5724 -6.4966 0.5862 37 1 6.9773 -8.5156 0.6995 38 1 6.5227 -10.4174 -0.7972 39 1 4.6573 -10.3039 -2.4004 40 1 3.2457 -8.2891 -2.5062 41 1 2.8643 -3.6158 0.8897 42 1 2.8792 -3.5946 -0.8899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397681503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:50 Heat of formation + Delta-G solvation = -45.668857 kcal Electronic energy + Delta-G solvation = -21665.629609 eV Core-core repulsion = 18609.175491 eV Total energy + Delta-G solvation = -3056.454119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02254 -39.61015 -37.57730 -35.38250 -33.53977 -32.43012 -31.74546 -31.56539 -28.55949 -26.87708 -25.35080 -23.54645 -23.24397 -22.84398 -21.96121 -20.18734 -18.72529 -18.24800 -17.01720 -16.84397 -16.69176 -16.21560 -15.92076 -15.62646 -15.19965 -15.02546 -14.75499 -14.31055 -14.18790 -13.98735 -13.81217 -13.48105 -13.24307 -12.93280 -12.77221 -12.73977 -12.43831 -12.27298 -12.11636 -11.87680 -11.81071 -11.70808 -11.32670 -11.20847 -10.77917 -10.59684 -10.34624 -9.82427 -9.73010 -8.78525 -8.04994 -6.18267 0.40979 0.49830 1.40517 1.41985 1.53814 2.44799 2.84101 3.16806 3.21694 3.53095 3.67168 3.89445 4.08576 4.16963 4.20998 4.23329 4.29999 4.33741 4.49549 4.59371 4.64194 4.74537 4.79493 4.87696 4.95458 4.99104 5.06024 5.10765 5.15689 5.21362 5.33170 5.45251 5.55569 5.57244 5.61964 5.66752 5.67643 6.01092 6.10455 6.18115 6.27091 6.39264 6.53869 6.73539 6.95524 7.49200 8.99892 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.004232 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.370109 B = 6615.277025 C = 7312.955056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.048 3.952 10 H -0.011 1.011 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.064 3.936 14 N -0.545 5.545 15 C 0.037 3.963 16 C 0.118 3.882 17 H 0.094 0.906 18 O -0.562 6.562 19 C -0.120 4.120 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.126 4.126 25 C 0.077 3.923 26 H 0.259 0.741 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.380 0.620 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.129 0.871 41 H 0.047 0.953 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.250 -19.766 -2.222 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.069 0.931 9 C 0.029 3.971 10 H 0.007 0.993 11 C -0.141 4.141 12 C -0.149 4.149 13 C -0.064 4.064 14 N -0.268 5.268 15 C -0.091 4.091 16 C 0.057 3.943 17 H 0.112 0.888 18 O -0.370 6.370 19 C -0.121 4.121 20 C -0.143 4.143 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.050 4.050 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.230 0.770 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.147 0.853 41 H 0.066 0.934 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.526 -19.511 -2.386 21.425 hybrid contribution 0.845 1.197 -0.070 1.467 sum 9.371 -18.314 -2.456 20.718 Atomic orbital electron populations 1.70056 1.07175 1.26821 1.51740 1.25737 0.95659 1.02327 0.95011 0.85579 0.79125 0.79851 0.77528 1.19153 1.20742 1.20597 1.21566 0.92964 0.92210 1.50005 0.93115 1.18664 0.93204 0.92063 0.93185 0.99311 1.21437 0.99008 0.96209 0.97455 1.21590 0.97589 0.95009 1.00750 1.22048 0.94932 0.98957 0.90469 1.62181 1.23934 1.02543 1.38102 1.22893 0.93560 0.94669 0.97992 1.21543 0.89990 0.82316 1.00432 0.88846 1.86715 1.62878 1.42569 1.44849 1.20550 0.97514 0.96425 0.97589 1.21114 0.95430 0.99082 0.98657 1.21427 0.99813 0.93283 0.99672 1.21520 0.97971 0.99370 0.95724 1.21447 0.95402 0.98145 0.99190 1.21227 1.00467 0.93673 0.99005 1.22198 0.95002 0.87661 1.00146 0.93223 0.96257 0.92679 0.91356 0.93228 0.95498 0.89353 0.88859 0.90218 0.76997 0.85462 0.84087 0.83786 0.83926 0.85333 0.93440 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.94 11.35 21.45 0.24 -54.69 16 2 C 0.01 0.62 5.30 84.65 0.45 1.07 16 3 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 7 C -0.53 -30.35 8.56 25.60 0.22 -30.13 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.05 2.52 2.27 -11.49 -0.03 2.49 16 10 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 11 C -0.10 -5.14 5.02 30.67 0.15 -4.99 16 12 C -0.11 -4.43 6.09 30.65 0.19 -4.24 16 13 C 0.06 2.15 5.06 86.33 0.44 2.59 16 14 N -0.54 -19.53 4.86 -896.35 -4.35 -23.89 16 15 C 0.04 1.02 5.16 86.30 0.45 1.46 16 16 C 0.12 3.08 2.92 29.85 0.09 3.17 16 17 H 0.09 2.63 6.32 -2.39 -0.02 2.62 16 18 O -0.56 -17.04 9.63 -148.98 -1.43 -18.47 16 19 C -0.12 -2.67 4.97 -19.87 -0.10 -2.77 16 20 C -0.12 -2.50 9.32 22.27 0.21 -2.30 16 21 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 22 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 23 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 24 C -0.13 -2.50 9.67 22.27 0.22 -2.28 16 25 C 0.08 3.31 3.44 86.33 0.30 3.61 16 26 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 27 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 3.11 6.15 -2.39 -0.01 3.09 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.03 0.91 6.65 -2.39 -0.02 0.90 16 32 H 0.09 2.43 8.06 -2.39 -0.02 2.41 16 33 H 0.09 2.23 8.06 -2.39 -0.02 2.21 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.38 9.30 7.50 -74.06 -0.56 8.74 16 36 H 0.13 2.25 6.78 -2.91 -0.02 2.23 16 37 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.13 2.26 8.04 -2.91 -0.02 2.23 16 41 H 0.05 2.02 8.12 -2.39 -0.02 2.00 16 42 H 0.05 2.43 5.58 -2.39 -0.01 2.42 16 Total: -1.00 -66.95 326.83 0.17 -66.78 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.45 Total: 21.01 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 3.24 Total: -37.80 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -4.11 Total: -78.58 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.43 Total: -18.47 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -66.95 0.17 -66.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397681503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.110 kcal (2) G-P(sol) polarization free energy of solvation -66.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds