Wall clock time and date at job start Mon Mar 30 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99946 * 2 1 4 4 H 1.48495 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46650 * 299.99642 * 3 2 1 6 6 H 1.48502 * 109.46884 * 59.99862 * 3 2 1 7 7 C 1.37884 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00039 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50477 * 60.07052 * 9 7 2 11 11 C 1.53122 * 109.50174 * 299.99754 * 9 7 2 12 12 C 1.53125 * 109.15987 * 182.40317 * 11 9 7 13 13 C 1.53035 * 109.27609 * 57.65616 * 12 11 9 14 14 N 1.46849 * 109.52164 * 300.81644 * 13 12 11 15 15 C 1.46902 * 111.00029 * 185.83984 * 14 13 12 16 16 C 1.52994 * 109.47158 * 164.04787 * 15 14 13 17 17 H 1.08998 * 109.47274 * 58.45049 * 16 15 14 18 18 O 1.42894 * 109.47148 * 298.44874 * 16 15 14 19 19 C 1.50707 * 109.47027 * 178.45003 * 16 15 14 20 20 C 1.38236 * 120.00105 * 265.00071 * 19 16 15 21 21 C 1.38232 * 119.99855 * 179.97438 * 20 19 16 22 22 C 1.38236 * 120.00229 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99718 * 359.97438 * 22 21 20 24 24 C 1.38231 * 120.00081 * 0.07307 * 23 22 21 25 25 C 1.46847 * 111.19571 * 61.74669 * 14 13 12 26 26 H 0.96993 * 120.00175 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.52391 * 62.50362 * 11 9 7 28 28 H 1.08993 * 109.57810 * 302.34278 * 11 9 7 29 29 H 1.08999 * 109.50310 * 297.71084 * 12 11 9 30 30 H 1.09001 * 109.50121 * 177.59448 * 12 11 9 31 31 H 1.09002 * 109.46115 * 180.80269 * 13 12 11 32 32 H 1.09000 * 109.45890 * 60.82947 * 13 12 11 33 33 H 1.09004 * 109.46918 * 44.04815 * 15 14 13 34 34 H 1.09004 * 109.47191 * 284.05311 * 15 14 13 35 35 H 0.96700 * 114.00327 * 300.00138 * 18 16 15 36 36 H 1.08002 * 119.99870 * 359.97438 * 20 19 16 37 37 H 1.07999 * 119.99997 * 180.02562 * 21 20 19 38 38 H 1.07994 * 119.99745 * 179.72499 * 22 21 20 39 39 H 1.07998 * 119.99773 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.99976 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.46398 * 58.27162 * 25 14 13 42 42 H 1.09002 * 109.46166 * 178.23812 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6255 -2.5582 -0.8901 11 6 0.3701 -2.5808 1.2502 12 6 -0.3456 -3.9343 1.2730 13 6 0.6945 -5.0564 1.2417 14 7 1.5111 -4.9347 0.0273 15 6 2.4287 -6.0741 -0.1063 16 6 2.9653 -6.1315 -1.5379 17 1 3.4741 -5.1967 -1.7731 18 8 1.8792 -6.3242 -2.4463 19 6 3.9359 -7.2775 -1.6650 20 6 5.2920 -7.0544 -1.5170 21 6 6.1821 -8.1056 -1.6331 22 6 5.7161 -9.3800 -1.8966 23 6 4.3598 -9.6033 -2.0436 24 6 3.4698 -8.5519 -1.9285 25 6 2.2449 -3.6629 0.0061 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3679 -1.7788 1.2287 28 1 0.9900 -2.4814 2.1412 29 1 -0.9962 -4.0166 0.4024 30 1 -0.9414 -4.0156 2.1822 31 1 0.1878 -6.0214 1.2435 32 1 1.3360 -4.9815 2.1198 33 1 1.8961 -6.9980 0.1194 34 1 3.2599 -5.9548 0.5888 35 1 1.3803 -7.1388 -2.2957 36 1 5.6561 -6.0587 -1.3107 37 1 7.2416 -7.9313 -1.5170 38 1 6.4119 -10.2005 -1.9917 39 1 3.9958 -10.5989 -2.2499 40 1 2.4102 -8.7263 -2.0438 41 1 2.8791 -3.5946 0.8900 42 1 2.8642 -3.6158 -0.8896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397681504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:54 Heat of formation + Delta-G solvation = -31.384477 kcal Electronic energy + Delta-G solvation = -21368.365704 eV Core-core repulsion = 18312.531002 eV Total energy + Delta-G solvation = -3055.834702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.78457 -38.22215 -36.48657 -33.59838 -32.09065 -31.20434 -30.95908 -29.84285 -27.47402 -24.95268 -24.00584 -22.68460 -21.86139 -21.26688 -20.63312 -18.58549 -17.64420 -16.41259 -15.87302 -15.74592 -15.24130 -14.87451 -14.56252 -14.22373 -14.09617 -13.66459 -13.41930 -13.01362 -12.87582 -12.77181 -12.41964 -12.20255 -11.81226 -11.61555 -11.40529 -11.23304 -10.96150 -10.89549 -10.64275 -10.59267 -10.07245 -9.92690 -9.78115 -9.42071 -9.06767 -9.04990 -8.79186 -8.62692 -8.26666 -7.61272 -5.93745 -3.99723 1.20450 1.26795 3.32216 3.40170 3.43664 3.62704 4.27015 4.48518 4.62244 4.74687 4.83347 4.90238 5.03910 5.16635 5.31088 5.36444 5.42251 5.46050 5.69390 5.75370 5.80975 5.85220 5.90188 6.02369 6.09335 6.26705 6.32326 6.36638 6.42366 6.51512 6.55920 6.73946 6.78579 6.85847 7.01041 7.25765 7.42750 7.66940 7.77177 7.82206 7.89136 8.14072 8.22028 8.52172 9.04557 9.64345 11.12297 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024070 B = 0.004128 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.002337 B = 6780.791031 C = 7489.848711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.036 0.964 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.064 3.936 14 N -0.528 5.528 15 C 0.031 3.969 16 C 0.151 3.849 17 H 0.110 0.890 18 O -0.535 6.535 19 C -0.108 4.108 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.113 4.113 25 C 0.067 3.933 26 H 0.259 0.741 27 H 0.091 0.909 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.365 0.635 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.017 0.983 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 -17.936 -0.969 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.054 0.946 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.063 4.063 14 N -0.252 5.252 15 C -0.098 4.098 16 C 0.092 3.908 17 H 0.127 0.873 18 O -0.339 6.339 19 C -0.109 4.109 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.137 4.137 24 C -0.131 4.131 25 C -0.060 4.060 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.212 0.788 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.035 0.965 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.745 -17.235 -1.599 18.577 hybrid contribution 0.960 0.330 1.046 1.458 sum 7.705 -16.905 -0.553 18.586 Atomic orbital electron populations 1.69899 1.05825 1.26150 1.50802 1.24932 0.94815 0.98912 0.95181 0.86587 0.80123 0.84047 0.77519 1.19890 1.21034 1.21134 1.21188 0.92815 0.90720 1.50514 0.92871 1.18654 0.92622 0.90199 0.94900 0.94599 1.21656 1.00059 0.94733 0.98430 1.21672 0.97156 0.96447 1.00194 1.22028 0.95530 0.98708 0.90072 1.61922 1.23627 1.01930 1.37758 1.22705 0.95814 0.95453 0.95821 1.20855 0.85447 0.95361 0.89185 0.87267 1.86710 1.45032 1.46019 1.56177 1.20749 0.95196 0.95735 0.99186 1.21072 0.92602 0.99491 0.99682 1.21149 0.99622 0.92943 0.99978 1.21141 0.95669 0.97018 1.00612 1.21101 0.93465 0.98830 1.00342 1.20904 0.99762 0.92266 1.00143 1.22356 0.96507 0.88662 0.98468 0.93147 0.89091 0.95276 0.91983 0.93593 0.92597 0.96088 0.91377 0.94558 0.78829 0.85775 0.86058 0.86270 0.86130 0.86118 0.96493 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 11.35 55.43 0.63 -24.98 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.24 8.56 -34.44 -0.29 -14.54 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.40 2.26 -91.70 -0.21 1.19 16 10 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 11 C -0.11 -2.66 5.02 -26.60 -0.13 -2.79 16 12 C -0.12 -2.31 6.09 -26.65 -0.16 -2.48 16 13 C 0.06 1.14 5.44 -3.83 -0.02 1.12 16 14 N -0.53 -9.79 4.51 -234.67 -1.06 -10.84 16 15 C 0.03 0.46 4.61 -3.83 -0.02 0.44 16 16 C 0.15 2.17 3.22 -27.88 -0.09 2.08 16 17 H 0.11 1.75 6.51 -51.93 -0.34 1.41 16 18 O -0.54 -8.13 13.03 -35.23 -0.46 -8.58 16 19 C -0.11 -1.33 5.00 -104.62 -0.52 -1.85 16 20 C -0.11 -1.29 9.68 -39.58 -0.38 -1.67 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 22 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.15 10.05 -39.59 -0.40 -1.54 16 24 C -0.11 -1.21 9.33 -39.59 -0.37 -1.58 16 25 C 0.07 1.44 4.52 -3.84 -0.02 1.42 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.86 7.96 -51.93 -0.41 0.45 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 34 H 0.04 0.54 8.06 -51.93 -0.42 0.13 16 35 H 0.36 4.13 7.39 45.56 0.34 4.47 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.12 1.07 6.62 -52.48 -0.35 0.72 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.27 6.47 -51.93 -0.34 0.93 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -30.35 333.10 -10.41 -40.76 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.01 Total: 3.92 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -3.51 Total: -21.72 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.43 Total: -35.82 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.46 Total: -8.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.35 -10.41 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397681504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.379 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds