Wall clock time and date at job start Mon Mar 30 2020 01:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00277 * 2 1 4 4 H 1.48503 * 109.47257 * 240.00585 * 3 2 1 5 5 H 1.48501 * 109.46753 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47273 * 120.00061 * 3 2 1 7 7 C 1.37881 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00308 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50103 * 59.92085 * 9 7 2 11 11 C 1.53123 * 109.53518 * 299.83015 * 9 7 2 12 12 C 1.53124 * 109.16220 * 182.38267 * 11 9 7 13 13 C 1.53035 * 109.27475 * 57.64849 * 12 11 9 14 14 N 1.46846 * 109.52744 * 300.82106 * 13 12 11 15 15 C 1.46898 * 111.00056 * 185.84176 * 14 13 12 16 16 C 1.50704 * 109.47089 * 293.95589 * 15 14 13 17 17 C 1.38237 * 119.99835 * 269.72352 * 16 15 14 18 18 C 1.38234 * 119.99773 * 179.76422 * 17 16 15 19 19 C 1.38234 * 120.00340 * 0.51157 * 18 17 16 20 20 C 1.50697 * 120.00251 * 179.72272 * 19 18 17 21 21 O 1.42897 * 109.47030 * 270.02003 * 20 19 18 22 22 C 1.38242 * 119.99571 * 359.74301 * 19 18 17 23 23 C 1.38233 * 120.00035 * 90.00112 * 16 15 14 24 24 C 1.46846 * 111.19780 * 61.74478 * 14 13 12 25 25 H 0.97001 * 119.99618 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.51952 * 302.28527 * 11 9 7 27 27 H 1.09002 * 109.52604 * 62.41348 * 11 9 7 28 28 H 1.08993 * 109.50112 * 297.71243 * 12 11 9 29 29 H 1.08992 * 109.50394 * 177.58991 * 12 11 9 30 30 H 1.09008 * 109.45841 * 180.80263 * 13 12 11 31 31 H 1.09003 * 109.46290 * 60.84246 * 13 12 11 32 32 H 1.08998 * 109.47354 * 53.94952 * 15 14 13 33 33 H 1.09001 * 109.47115 * 173.95752 * 15 14 13 34 34 H 1.07998 * 120.00141 * 0.02562 * 17 16 15 35 35 H 1.08002 * 120.00101 * 180.23468 * 18 17 16 36 36 H 1.08992 * 109.47173 * 30.02558 * 20 19 18 37 37 H 1.09005 * 109.47088 * 150.02431 * 20 19 18 38 38 H 0.96701 * 113.99847 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.99858 * 179.97438 * 22 19 18 40 40 H 1.07998 * 120.00307 * 359.97438 * 23 16 15 41 41 H 1.09009 * 109.46169 * 58.27021 * 24 14 13 42 42 H 1.08995 * 109.46611 * 178.23876 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6228 -2.5566 -0.8894 11 6 0.3739 -2.5840 1.2517 12 6 -0.3418 -3.9375 1.2733 13 6 0.6982 -5.0595 1.2357 14 7 1.5111 -4.9348 0.0191 15 6 2.4282 -6.0739 -0.1203 16 6 3.4426 -6.0413 0.9937 17 6 4.6355 -5.3641 0.8226 18 6 5.5640 -5.3302 1.8461 19 6 5.3042 -5.9823 3.0370 20 6 6.3190 -5.9505 4.1505 21 8 7.2106 -7.0588 4.0141 22 6 4.1134 -6.6640 3.2061 23 6 3.1827 -6.6935 2.1844 24 6 2.2448 -3.6629 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 0.9975 -2.4875 2.1404 27 1 -0.3634 -1.7813 1.2351 28 1 -0.9950 -4.0176 0.4044 29 1 -0.9347 -4.0212 2.1840 30 1 0.1914 -6.0246 1.2366 31 1 1.3424 -4.9871 2.1120 32 1 1.8625 -7.0042 -0.0694 33 1 2.9407 -6.0123 -1.0804 34 1 4.8403 -4.8580 -0.1093 35 1 6.4944 -4.7979 1.7139 36 1 6.8850 -5.0204 4.0999 37 1 5.8068 -6.0123 5.1108 38 1 7.8919 -7.1021 4.6990 39 1 3.9106 -7.1738 4.1364 40 1 2.2525 -7.2260 2.3167 41 1 2.8818 -3.5970 0.8810 42 1 2.8614 -3.6136 -0.8986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397692594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:19 Heat of formation + Delta-G solvation = -33.320791 kcal Electronic energy + Delta-G solvation = -21589.963459 eV Core-core repulsion = 18534.044792 eV Total energy + Delta-G solvation = -3055.918667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82316 -37.99190 -36.62307 -34.05911 -32.33507 -30.94997 -30.65321 -29.76049 -27.08554 -24.94122 -24.50324 -22.73689 -21.80112 -21.17194 -20.49119 -18.51820 -17.62390 -16.43744 -16.10985 -15.67523 -15.34666 -14.88199 -14.37170 -14.20768 -13.81991 -13.73781 -13.50714 -13.30228 -12.86499 -12.48470 -12.37203 -12.06391 -11.92075 -11.59694 -11.34082 -10.99633 -10.92423 -10.85233 -10.63270 -10.59802 -10.25726 -10.07432 -9.80345 -9.44785 -9.04950 -8.74695 -8.68730 -8.52043 -8.26870 -7.65161 -5.94607 -4.00466 1.34912 1.54708 3.33362 3.38071 3.40414 3.72512 4.35825 4.43690 4.67724 4.79360 4.90660 5.07019 5.11932 5.15910 5.27520 5.35396 5.51192 5.58329 5.72855 5.79688 5.87050 6.00289 6.11659 6.14759 6.17668 6.31441 6.47461 6.50158 6.54931 6.64307 6.74004 6.77195 6.81209 7.01298 7.10516 7.25566 7.39570 7.42848 7.68696 7.77587 7.84131 8.11971 8.20667 8.51681 9.03279 9.63443 11.11458 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.005050 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.246335 B = 5542.777790 C = 6476.017053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.033 0.967 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.526 5.526 15 C 0.088 3.912 16 C -0.103 4.103 17 C -0.105 4.105 18 C -0.099 4.099 19 C -0.102 4.102 20 C 0.119 3.881 21 O -0.568 6.568 22 C -0.103 4.103 23 C -0.114 4.114 24 C 0.065 3.935 25 H 0.260 0.740 26 H 0.028 0.972 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.377 0.623 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.026 0.974 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.344 -13.042 6.808 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.036 3.964 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.069 4.069 14 N -0.248 5.248 15 C -0.040 4.040 16 C -0.105 4.105 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.102 4.102 20 C 0.042 3.958 21 O -0.374 6.374 22 C -0.121 4.121 23 C -0.132 4.132 24 C -0.062 4.062 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.224 0.776 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.045 0.955 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.452 -13.017 5.861 16.104 hybrid contribution 1.400 1.143 1.325 2.241 sum 8.852 -11.874 7.186 16.462 Atomic orbital electron populations 1.69884 1.05821 1.26358 1.50693 1.24923 0.94805 0.98860 0.95186 0.86713 0.79642 0.83416 0.78522 1.20305 1.21315 1.20447 1.21100 0.92729 0.90697 1.50661 0.92994 1.18661 0.92642 0.90368 0.94741 0.94895 1.21638 0.99970 0.94677 0.98479 1.21680 0.97213 0.96574 1.00106 1.22085 0.95497 0.98479 0.90804 1.62441 1.22544 1.02360 1.37434 1.21323 0.91638 0.95508 0.95502 1.20841 0.95841 0.96680 0.97114 1.21105 0.93363 0.98622 0.99262 1.20996 0.99116 0.98890 0.92711 1.19509 0.95089 1.00142 0.95459 1.20975 0.90041 0.88946 0.95886 1.86581 1.46184 1.49139 1.55501 1.20943 0.93694 0.98518 0.98922 1.21010 0.99014 0.99941 0.93263 1.22361 0.96568 0.88312 0.98940 0.93047 0.95310 0.89199 0.92146 0.93629 0.92629 0.95272 0.90627 0.90197 0.85803 0.86253 0.92790 0.92919 0.77644 0.86436 0.86227 0.95531 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 11.36 55.43 0.63 -24.89 16 2 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.16 8.56 -34.44 -0.29 -14.46 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.64 5.03 -26.60 -0.13 -2.77 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.51 16 13 C 0.06 1.06 4.83 -3.84 -0.02 1.04 16 14 N -0.53 -9.73 4.86 -236.11 -1.15 -10.88 16 15 C 0.09 1.34 5.56 -4.97 -0.03 1.31 16 16 C -0.10 -1.55 4.03 -104.62 -0.42 -1.97 16 17 C -0.10 -1.59 8.03 -39.58 -0.32 -1.90 16 18 C -0.10 -1.41 9.70 -39.58 -0.38 -1.80 16 19 C -0.10 -1.38 5.51 -104.62 -0.58 -1.96 16 20 C 0.12 1.27 7.17 36.00 0.26 1.52 16 21 O -0.57 -6.04 13.64 -35.23 -0.48 -6.52 16 22 C -0.10 -1.38 9.70 -39.58 -0.38 -1.76 16 23 C -0.11 -1.59 8.12 -39.58 -0.32 -1.92 16 24 C 0.06 1.39 3.77 -3.84 -0.01 1.37 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.86 8.06 -51.92 -0.42 0.44 16 31 H 0.03 0.53 6.55 -51.93 -0.34 0.19 16 32 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 33 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.12 1.80 8.03 -52.49 -0.42 1.38 16 35 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.38 2.01 9.12 45.56 0.42 2.43 16 39 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.12 1.49 8.03 -52.49 -0.42 1.07 16 41 H 0.03 0.59 6.48 -51.92 -0.34 0.25 16 42 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -30.76 331.95 -10.13 -40.90 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.02 Total: 2.98 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -3.10 Total: -22.95 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.52 Total: -35.77 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.48 Total: -6.52 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.76 -10.13 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397692594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.576 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds