Wall clock time and date at job start Mon Mar 30 2020 01:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00277 * 2 1 4 4 H 1.48503 * 109.47257 * 240.00585 * 3 2 1 5 5 H 1.48501 * 109.46753 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47273 * 120.00061 * 3 2 1 7 7 C 1.37881 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00308 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50103 * 59.92085 * 9 7 2 11 11 C 1.53123 * 109.53518 * 299.83015 * 9 7 2 12 12 C 1.53124 * 109.16220 * 182.38267 * 11 9 7 13 13 C 1.53035 * 109.27475 * 57.64849 * 12 11 9 14 14 N 1.46846 * 109.52744 * 300.82106 * 13 12 11 15 15 C 1.46898 * 111.00056 * 185.84176 * 14 13 12 16 16 C 1.50704 * 109.47089 * 293.95589 * 15 14 13 17 17 C 1.38237 * 119.99835 * 269.72352 * 16 15 14 18 18 C 1.38234 * 119.99773 * 179.76422 * 17 16 15 19 19 C 1.38234 * 120.00340 * 0.51157 * 18 17 16 20 20 C 1.50697 * 120.00251 * 179.72272 * 19 18 17 21 21 O 1.42897 * 109.47030 * 270.02003 * 20 19 18 22 22 C 1.38242 * 119.99571 * 359.74301 * 19 18 17 23 23 C 1.38233 * 120.00035 * 90.00112 * 16 15 14 24 24 C 1.46846 * 111.19780 * 61.74478 * 14 13 12 25 25 H 0.97001 * 119.99618 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.51952 * 302.28527 * 11 9 7 27 27 H 1.09002 * 109.52604 * 62.41348 * 11 9 7 28 28 H 1.08993 * 109.50112 * 297.71243 * 12 11 9 29 29 H 1.08992 * 109.50394 * 177.58991 * 12 11 9 30 30 H 1.09008 * 109.45841 * 180.80263 * 13 12 11 31 31 H 1.09003 * 109.46290 * 60.84246 * 13 12 11 32 32 H 1.08998 * 109.47354 * 53.94952 * 15 14 13 33 33 H 1.09001 * 109.47115 * 173.95752 * 15 14 13 34 34 H 1.07998 * 120.00141 * 0.02562 * 17 16 15 35 35 H 1.08002 * 120.00101 * 180.23468 * 18 17 16 36 36 H 1.08992 * 109.47173 * 30.02558 * 20 19 18 37 37 H 1.09005 * 109.47088 * 150.02431 * 20 19 18 38 38 H 0.96701 * 113.99847 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.99858 * 179.97438 * 22 19 18 40 40 H 1.07998 * 120.00307 * 359.97438 * 23 16 15 41 41 H 1.09009 * 109.46169 * 58.27021 * 24 14 13 42 42 H 1.08995 * 109.46611 * 178.23876 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6228 -2.5566 -0.8894 11 6 0.3739 -2.5840 1.2517 12 6 -0.3418 -3.9375 1.2733 13 6 0.6982 -5.0595 1.2357 14 7 1.5111 -4.9348 0.0191 15 6 2.4282 -6.0739 -0.1203 16 6 3.4426 -6.0413 0.9937 17 6 4.6355 -5.3641 0.8226 18 6 5.5640 -5.3302 1.8461 19 6 5.3042 -5.9823 3.0370 20 6 6.3190 -5.9505 4.1505 21 8 7.2106 -7.0588 4.0141 22 6 4.1134 -6.6640 3.2061 23 6 3.1827 -6.6935 2.1844 24 6 2.2448 -3.6629 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 0.9975 -2.4875 2.1404 27 1 -0.3634 -1.7813 1.2351 28 1 -0.9950 -4.0176 0.4044 29 1 -0.9347 -4.0212 2.1840 30 1 0.1914 -6.0246 1.2366 31 1 1.3424 -4.9871 2.1120 32 1 1.8625 -7.0042 -0.0694 33 1 2.9407 -6.0123 -1.0804 34 1 4.8403 -4.8580 -0.1093 35 1 6.4944 -4.7979 1.7139 36 1 6.8850 -5.0204 4.0999 37 1 5.8068 -6.0123 5.1108 38 1 7.8919 -7.1021 4.6990 39 1 3.9106 -7.1738 4.1364 40 1 2.2525 -7.2260 2.3167 41 1 2.8818 -3.5970 0.8810 42 1 2.8614 -3.6136 -0.8986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397692594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:18 Heat of formation + Delta-G solvation = -53.682905 kcal Electronic energy + Delta-G solvation = -21590.846426 eV Core-core repulsion = 18534.044792 eV Total energy + Delta-G solvation = -3056.801634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99731 -39.34909 -37.54996 -35.73715 -34.00942 -32.11746 -31.96018 -31.47713 -28.26433 -26.93308 -25.69109 -23.94951 -23.24571 -22.78769 -21.64922 -20.24759 -18.44215 -18.37379 -17.23963 -16.86981 -16.64233 -16.38849 -15.90365 -15.69486 -15.16505 -14.82219 -14.76314 -14.44189 -14.34957 -14.18223 -13.97418 -13.37641 -13.28541 -12.93534 -12.85831 -12.77847 -12.53619 -12.33745 -12.01829 -11.94597 -11.74269 -11.67873 -11.37580 -10.99903 -10.88235 -10.66127 -10.37381 -9.81400 -9.63479 -9.12468 -8.07464 -6.21357 0.29461 0.48345 1.40558 1.41797 1.49445 2.42621 2.69885 3.19365 3.25078 3.56144 3.83225 3.93885 4.06251 4.14448 4.17572 4.25349 4.32394 4.40648 4.51153 4.53190 4.56658 4.67924 4.76196 4.81045 4.86771 4.93755 5.00744 5.08572 5.13514 5.13789 5.20060 5.40157 5.43699 5.52069 5.61850 5.63519 5.66410 5.97779 6.06744 6.13355 6.21651 6.35645 6.47165 6.89236 6.90887 7.46159 8.97117 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.005050 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.246335 B = 5542.777790 C = 6476.017053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.048 0.952 9 C 0.052 3.948 10 H -0.004 1.004 11 C -0.102 4.102 12 C -0.112 4.112 13 C 0.065 3.935 14 N -0.535 5.535 15 C 0.091 3.909 16 C -0.117 4.117 17 C -0.123 4.123 18 C -0.114 4.114 19 C -0.111 4.111 20 C 0.120 3.880 21 O -0.587 6.587 22 C -0.110 4.110 23 C -0.117 4.117 24 C 0.086 3.914 25 H 0.260 0.740 26 H 0.017 0.983 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.028 0.972 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.399 0.601 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.018 0.982 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.120 -14.354 8.121 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.033 3.967 10 H 0.014 0.986 11 C -0.140 4.140 12 C -0.150 4.150 13 C -0.062 4.062 14 N -0.258 5.258 15 C -0.036 4.036 16 C -0.119 4.119 17 C -0.142 4.142 18 C -0.133 4.133 19 C -0.112 4.112 20 C 0.043 3.957 21 O -0.396 6.396 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.042 4.042 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.249 0.751 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.037 0.963 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.251 -14.349 7.184 18.044 hybrid contribution 1.190 1.513 0.931 2.138 sum 9.440 -12.836 8.116 17.881 Atomic orbital electron populations 1.70029 1.07140 1.27085 1.51200 1.25696 0.95638 1.02209 0.94794 0.85716 0.78488 0.79300 0.78774 1.19620 1.20810 1.19810 1.21467 0.92833 0.92245 1.50834 0.93326 1.18599 0.93038 0.91463 0.93624 0.98622 1.21433 0.98974 0.96379 0.97208 1.21605 0.97628 0.94898 1.00890 1.22067 0.94797 0.99000 0.90379 1.62355 1.23281 1.02050 1.38066 1.21364 0.91520 0.94837 0.95865 1.20839 0.95832 0.97634 0.97612 1.21224 0.94150 0.99209 0.99572 1.21225 0.99485 0.99456 0.93085 1.19951 0.96027 0.99271 0.95912 1.20981 0.89850 0.89426 0.95462 1.86512 1.47030 1.49060 1.57034 1.21287 0.93443 0.98332 0.99710 1.21264 0.99862 0.99612 0.92851 1.21934 0.95241 0.88720 0.98270 0.93075 0.96444 0.92492 0.92999 0.91313 0.89136 0.95387 0.88128 0.89988 0.86372 0.85322 0.91869 0.91103 0.75056 0.84188 0.84409 0.96346 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.97 11.36 21.45 0.24 -53.73 16 2 C 0.02 0.87 5.31 84.66 0.45 1.32 16 3 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.54 -30.35 8.56 25.60 0.22 -30.13 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.05 2.69 2.26 -11.49 -0.03 2.67 16 10 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 11 C -0.10 -5.01 5.03 30.68 0.15 -4.85 16 12 C -0.11 -4.38 6.09 30.65 0.19 -4.19 16 13 C 0.07 2.18 4.83 86.33 0.42 2.60 16 14 N -0.54 -19.25 4.86 -900.92 -4.38 -23.63 16 15 C 0.09 2.61 5.56 85.56 0.48 3.08 16 16 C -0.12 -3.37 4.03 -19.86 -0.08 -3.45 16 17 C -0.12 -3.68 8.03 22.27 0.18 -3.50 16 18 C -0.11 -3.18 9.70 22.27 0.22 -2.96 16 19 C -0.11 -2.83 5.51 -19.87 -0.11 -2.93 16 20 C 0.12 2.27 7.17 71.24 0.51 2.78 16 21 O -0.59 -11.06 13.64 -148.98 -2.03 -13.10 16 22 C -0.11 -2.68 9.70 22.27 0.22 -2.47 16 23 C -0.12 -3.01 8.12 22.27 0.18 -2.82 16 24 C 0.09 3.72 3.77 86.32 0.33 4.04 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 3.16 6.16 -2.39 -0.01 3.15 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.09 2.45 8.06 -2.38 -0.02 2.43 16 31 H 0.03 0.96 6.55 -2.39 -0.02 0.94 16 32 H 0.10 2.37 8.00 -2.39 -0.02 2.35 16 33 H 0.08 2.28 8.08 -2.39 -0.02 2.26 16 34 H 0.12 3.52 8.03 -2.91 -0.02 3.50 16 35 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 37 H 0.07 1.07 8.09 -2.38 -0.02 1.05 16 38 H 0.40 3.24 9.12 -74.06 -0.68 2.56 16 39 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.14 2.94 8.03 -2.91 -0.02 2.92 16 41 H 0.02 0.82 6.48 -2.38 -0.02 0.81 16 42 H 0.05 2.22 8.12 -2.39 -0.02 2.20 16 Total: -1.00 -67.29 331.95 -0.51 -67.80 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.32 Total: 17.12 kcal Atomic # 6 Polarization: -44.14 SS G_CDS: 3.31 Total: -40.82 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -4.13 Total: -77.36 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -2.03 Total: -13.10 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -67.29 -0.51 -67.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397692594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.114 kcal (2) G-P(sol) polarization free energy of solvation -67.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds