Wall clock time and date at job start Mon Mar 30 2020 01:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48500 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47205 * 300.00193 * 3 2 1 6 6 H 1.48503 * 109.47415 * 59.99954 * 3 2 1 7 7 C 1.39940 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99435 * 197.86642 * 7 2 1 9 9 C 1.41391 * 120.00512 * 17.86575 * 7 2 1 10 10 C 1.40714 * 120.24400 * 24.37784 * 9 7 2 11 11 C 1.37616 * 119.74726 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24583 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.74734 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47036 * 89.99731 * 13 12 11 15 15 C 1.48527 * 111.00366 * 287.39796 * 14 13 12 16 16 C 1.54933 * 103.22733 * 200.27540 * 15 14 13 17 17 C 1.54601 * 102.91988 * 37.41825 * 16 15 14 18 18 C 1.47907 * 110.99940 * 169.99830 * 14 13 12 19 19 H 1.08998 * 109.91470 * 26.49589 * 18 14 13 20 20 C 1.53000 * 110.08219 * 265.29503 * 18 14 13 21 21 C 1.52997 * 109.47631 * 65.85594 * 20 18 14 22 22 O 1.42895 * 109.47222 * 180.02562 * 21 20 18 23 23 C 1.38628 * 120.50430 * 0.29606 * 12 11 10 24 24 C 1.37619 * 120.24584 * 359.44417 * 23 12 11 25 25 H 0.97004 * 119.99652 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.12169 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.87432 * 180.02562 * 11 10 9 28 28 H 1.09005 * 109.47439 * 330.00444 * 13 12 11 29 29 H 1.08997 * 109.47293 * 210.00272 * 13 12 11 30 30 H 1.09004 * 110.66662 * 318.71639 * 15 14 13 31 31 H 1.09002 * 110.66879 * 81.67325 * 15 14 13 32 32 H 1.08997 * 110.73073 * 279.05678 * 16 15 14 33 33 H 1.09005 * 110.72605 * 155.77025 * 16 15 14 34 34 H 1.09006 * 110.30630 * 219.12668 * 17 16 15 35 35 H 1.08994 * 110.31389 * 96.95729 * 17 16 15 36 36 H 1.08998 * 109.46856 * 185.86062 * 20 18 14 37 37 H 1.08999 * 109.47100 * 305.85713 * 20 18 14 38 38 H 1.09006 * 109.47113 * 300.00159 * 21 20 18 39 39 H 1.08999 * 109.46781 * 59.99924 * 21 20 18 40 40 H 0.96707 * 113.99793 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.87793 * 179.70350 * 23 12 11 42 42 H 1.08005 * 120.12938 * 180.27337 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2864 9 6 1.3521 -2.4068 -0.3767 10 6 0.2209 -2.3615 -1.2124 11 6 -0.4098 -3.5307 -1.5717 12 6 0.0657 -4.7498 -1.1140 13 6 -0.6333 -6.0233 -1.5150 14 7 -0.0421 -6.5358 -2.7583 15 6 -0.4384 -5.6998 -3.9203 16 6 -0.1977 -6.6373 -5.1300 17 6 -0.6308 -8.0190 -4.5882 18 6 -0.5329 -7.8989 -3.0561 19 1 -1.5159 -8.0455 -2.6086 20 6 0.4474 -8.9405 -2.5131 21 6 0.4704 -8.8715 -0.9849 22 8 1.3864 -9.8440 -0.4779 23 6 1.1760 -4.8060 -0.2857 24 6 1.8256 -3.6499 0.0821 25 1 -0.4850 0.8401 0.0004 26 1 -0.1509 -1.4128 -1.5704 27 1 -1.2779 -3.4984 -2.2134 28 1 -1.6929 -5.8221 -1.6726 29 1 -0.5179 -6.7653 -0.7249 30 1 -1.4900 -5.4210 -3.8528 31 1 0.1901 -4.8117 -3.9875 32 1 0.8562 -6.6453 -5.4083 33 1 -0.8188 -6.3428 -5.9760 34 1 0.0428 -8.7956 -4.9506 35 1 -1.6563 -8.2375 -4.8858 36 1 0.1313 -9.9353 -2.8272 37 1 1.4455 -8.7371 -2.9011 38 1 0.7865 -7.8767 -0.6708 39 1 -0.5277 -9.0749 -0.5970 40 1 1.4521 -9.8571 0.4868 41 1 1.5349 -5.7609 0.0688 42 1 2.6931 -3.6962 0.7239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399021662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:09 Heat of formation + Delta-G solvation = -39.204721 kcal Electronic energy + Delta-G solvation = -21312.334953 eV Core-core repulsion = 18256.161140 eV Total energy + Delta-G solvation = -3056.173813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.35304 -37.38429 -36.62772 -33.99768 -32.21837 -32.01128 -29.53012 -29.20520 -27.05111 -26.29203 -23.77658 -22.20320 -21.22947 -20.56586 -20.01011 -19.74488 -17.31863 -17.19071 -16.03323 -15.41982 -15.22662 -15.03504 -14.25574 -13.98954 -13.83156 -13.75445 -13.40889 -12.77962 -12.60233 -12.25641 -12.00347 -11.96274 -11.82634 -11.54214 -11.44290 -11.15391 -10.96668 -10.90493 -10.75291 -10.58035 -10.49748 -10.44922 -10.27818 -9.83839 -9.46833 -9.36277 -9.10918 -8.06619 -7.42215 -7.27702 -6.75726 -4.33396 2.73933 3.07144 3.10362 3.12922 3.17776 3.93689 4.20916 4.28865 4.64529 4.79701 4.92150 5.06483 5.17546 5.37729 5.44930 5.47577 5.60561 5.68392 5.75728 5.79720 5.83197 5.87576 5.94023 6.10476 6.15811 6.22985 6.27224 6.34420 6.37212 6.42353 6.44594 6.95509 7.08492 7.20587 7.34638 7.39747 7.45512 7.63419 7.66601 7.90180 8.07455 8.15477 8.32102 8.65863 8.91408 8.99651 10.18891 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025148 B = 0.004161 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.122050 B = 6727.111327 C = 7432.753817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.166 4.166 11 C -0.093 4.093 12 C -0.205 4.205 13 C 0.105 3.895 14 N -0.504 5.504 15 C 0.043 3.957 16 C -0.124 4.124 17 C -0.124 4.124 18 C 0.063 3.937 19 H 0.047 0.953 20 C -0.099 4.099 21 C 0.068 3.932 22 O -0.579 6.579 23 C -0.070 4.070 24 C -0.228 4.228 25 H 0.279 0.721 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.377 0.623 41 H 0.084 0.916 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 -11.430 -5.334 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.185 4.185 11 C -0.112 4.112 12 C -0.206 4.206 13 C -0.022 4.022 14 N -0.228 5.228 15 C -0.085 4.085 16 C -0.162 4.162 17 C -0.162 4.162 18 C -0.046 4.046 19 H 0.065 0.935 20 C -0.137 4.137 21 C -0.009 4.009 22 O -0.384 6.384 23 C -0.089 4.089 24 C -0.247 4.247 25 H 0.090 0.910 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.223 0.777 41 H 0.102 0.898 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.423 -11.392 -5.873 13.044 hybrid contribution -0.757 1.002 0.645 1.412 sum -3.180 -10.390 -5.228 12.058 Atomic orbital electron populations 1.69842 1.07589 1.29010 1.35544 1.25898 0.94689 1.01270 0.92234 0.86305 0.81085 0.81074 0.78521 1.18388 1.19727 1.20038 1.19629 0.98155 0.91337 1.40153 0.90479 1.17616 0.91054 0.91999 0.88387 1.21272 0.99368 0.96642 1.01215 1.20491 0.98369 0.92844 0.99458 1.18785 1.01599 0.92179 1.08062 1.21067 0.94582 0.95581 0.90939 1.64839 1.55433 1.00124 1.02433 1.23159 0.98855 0.97133 0.89369 1.22495 1.01817 0.94481 0.97431 1.22410 1.01143 0.98293 0.94357 1.22318 0.96105 0.90984 0.95151 0.93492 1.21475 1.00910 0.97582 0.93695 1.22471 0.91269 0.92015 0.95126 1.86428 1.65688 1.60190 1.26139 1.20277 0.95013 0.96104 0.97526 1.20954 1.03673 0.92976 1.07111 0.91014 0.86610 0.90044 0.95672 0.91444 0.94317 0.89511 0.90854 0.91518 0.91066 0.91819 0.91785 0.90464 0.91681 0.94623 0.77695 0.89785 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.54 10.95 55.55 0.61 -19.93 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.36 9.05 -37.75 -0.34 -12.70 16 8 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 9 C 0.11 2.99 5.58 -106.83 -0.60 2.40 16 10 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 11 C -0.09 -2.12 8.78 -39.66 -0.35 -2.47 16 12 C -0.20 -4.37 5.18 -104.33 -0.54 -4.91 16 13 C 0.10 1.82 4.38 -4.97 -0.02 1.80 16 14 N -0.50 -7.99 4.70 -224.00 -1.05 -9.05 16 15 C 0.04 0.64 5.67 -1.90 -0.01 0.63 16 16 C -0.12 -1.50 7.06 -24.87 -0.18 -1.67 16 17 C -0.12 -1.38 6.57 -25.37 -0.17 -1.55 16 18 C 0.06 0.82 2.61 -66.64 -0.17 0.65 16 19 H 0.05 0.60 7.77 -51.93 -0.40 0.20 16 20 C -0.10 -1.27 5.05 -26.73 -0.13 -1.41 16 21 C 0.07 0.89 5.90 37.16 0.22 1.11 16 22 O -0.58 -7.49 13.66 -35.23 -0.48 -7.97 16 23 C -0.07 -1.57 9.67 -39.66 -0.38 -1.96 16 24 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 25 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 26 H 0.12 3.10 6.16 -52.48 -0.32 2.78 16 27 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.03 0.43 7.77 -51.93 -0.40 0.03 16 29 H 0.07 1.09 5.17 -51.93 -0.27 0.82 16 30 H 0.04 0.58 7.81 -51.93 -0.41 0.17 16 31 H 0.09 1.49 7.83 -51.93 -0.41 1.08 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.96 5.79 -51.93 -0.30 0.66 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.38 3.23 9.12 45.56 0.42 3.65 16 41 H 0.08 1.69 7.92 -52.49 -0.42 1.27 16 42 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -28.38 333.56 -10.26 -38.63 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.84 Total: 8.50 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -3.48 Total: -28.86 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: -0.45 Total: -28.98 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.48 Total: -7.97 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.38 -10.26 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399021662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.574 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds