Wall clock time and date at job start Mon Mar 30 2020 01:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48500 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47205 * 300.00193 * 3 2 1 6 6 H 1.48503 * 109.47415 * 59.99954 * 3 2 1 7 7 C 1.39940 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99435 * 197.86642 * 7 2 1 9 9 C 1.41391 * 120.00512 * 17.86575 * 7 2 1 10 10 C 1.40714 * 120.24400 * 24.37784 * 9 7 2 11 11 C 1.37616 * 119.74726 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24583 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.74734 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47036 * 89.99731 * 13 12 11 15 15 C 1.48527 * 111.00366 * 287.39796 * 14 13 12 16 16 C 1.54933 * 103.22733 * 200.27540 * 15 14 13 17 17 C 1.54601 * 102.91988 * 37.41825 * 16 15 14 18 18 C 1.47907 * 110.99940 * 169.99830 * 14 13 12 19 19 H 1.08998 * 109.91470 * 26.49589 * 18 14 13 20 20 C 1.53000 * 110.08219 * 265.29503 * 18 14 13 21 21 C 1.52997 * 109.47631 * 65.85594 * 20 18 14 22 22 O 1.42895 * 109.47222 * 180.02562 * 21 20 18 23 23 C 1.38628 * 120.50430 * 0.29606 * 12 11 10 24 24 C 1.37619 * 120.24584 * 359.44417 * 23 12 11 25 25 H 0.97004 * 119.99652 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.12169 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.87432 * 180.02562 * 11 10 9 28 28 H 1.09005 * 109.47439 * 330.00444 * 13 12 11 29 29 H 1.08997 * 109.47293 * 210.00272 * 13 12 11 30 30 H 1.09004 * 110.66662 * 318.71639 * 15 14 13 31 31 H 1.09002 * 110.66879 * 81.67325 * 15 14 13 32 32 H 1.08997 * 110.73073 * 279.05678 * 16 15 14 33 33 H 1.09005 * 110.72605 * 155.77025 * 16 15 14 34 34 H 1.09006 * 110.30630 * 219.12668 * 17 16 15 35 35 H 1.08994 * 110.31389 * 96.95729 * 17 16 15 36 36 H 1.08998 * 109.46856 * 185.86062 * 20 18 14 37 37 H 1.08999 * 109.47100 * 305.85713 * 20 18 14 38 38 H 1.09006 * 109.47113 * 300.00159 * 21 20 18 39 39 H 1.08999 * 109.46781 * 59.99924 * 21 20 18 40 40 H 0.96707 * 113.99793 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.87793 * 179.70350 * 23 12 11 42 42 H 1.08005 * 120.12938 * 180.27337 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2864 9 6 1.3521 -2.4068 -0.3767 10 6 0.2209 -2.3615 -1.2124 11 6 -0.4098 -3.5307 -1.5717 12 6 0.0657 -4.7498 -1.1140 13 6 -0.6333 -6.0233 -1.5150 14 7 -0.0421 -6.5358 -2.7583 15 6 -0.4384 -5.6998 -3.9203 16 6 -0.1977 -6.6373 -5.1300 17 6 -0.6308 -8.0190 -4.5882 18 6 -0.5329 -7.8989 -3.0561 19 1 -1.5159 -8.0455 -2.6086 20 6 0.4474 -8.9405 -2.5131 21 6 0.4704 -8.8715 -0.9849 22 8 1.3864 -9.8440 -0.4779 23 6 1.1760 -4.8060 -0.2857 24 6 1.8256 -3.6499 0.0821 25 1 -0.4850 0.8401 0.0004 26 1 -0.1509 -1.4128 -1.5704 27 1 -1.2779 -3.4984 -2.2134 28 1 -1.6929 -5.8221 -1.6726 29 1 -0.5179 -6.7653 -0.7249 30 1 -1.4900 -5.4210 -3.8528 31 1 0.1901 -4.8117 -3.9875 32 1 0.8562 -6.6453 -5.4083 33 1 -0.8188 -6.3428 -5.9760 34 1 0.0428 -8.7956 -4.9506 35 1 -1.6563 -8.2375 -4.8858 36 1 0.1313 -9.9353 -2.8272 37 1 1.4455 -8.7371 -2.9011 38 1 0.7865 -7.8767 -0.6708 39 1 -0.5277 -9.0749 -0.5970 40 1 1.4521 -9.8571 0.4868 41 1 1.5349 -5.7609 0.0688 42 1 2.6931 -3.6962 0.7239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399021662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:08 Heat of formation + Delta-G solvation = -57.018415 kcal Electronic energy + Delta-G solvation = -21313.107413 eV Core-core repulsion = 18256.161140 eV Total energy + Delta-G solvation = -3056.946273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56698 -39.12286 -37.62726 -35.78912 -33.69486 -33.03689 -31.26533 -31.00702 -28.08428 -27.93917 -25.30972 -23.51112 -22.81215 -21.92887 -21.41542 -21.05141 -19.21779 -18.20970 -17.26205 -17.05151 -16.48654 -16.21844 -15.83376 -15.54579 -15.41479 -14.85484 -14.67108 -14.33263 -14.01671 -13.80332 -13.48900 -13.43405 -13.18627 -12.95945 -12.75758 -12.58404 -12.45126 -12.30440 -12.11552 -11.99505 -11.87634 -11.61670 -11.39898 -11.25947 -11.22995 -10.99123 -10.72452 -9.39580 -9.26705 -9.13343 -8.63536 -6.32147 0.95246 1.17247 1.37278 1.49177 1.52626 2.20763 2.68250 3.18478 3.32496 3.71726 3.83938 3.90877 4.09961 4.18750 4.25529 4.33409 4.37403 4.44065 4.53800 4.57931 4.59789 4.70973 4.74966 4.79067 4.94227 5.02101 5.05358 5.08391 5.14363 5.16664 5.22242 5.28196 5.40324 5.40484 5.49246 5.72117 5.96873 6.05868 6.11937 6.26183 6.30467 6.41398 6.72045 6.89033 6.95838 7.05767 8.33753 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025148 B = 0.004161 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.122050 B = 6727.111327 C = 7432.753817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.190 4.190 13 C 0.111 3.889 14 N -0.519 5.519 15 C 0.038 3.962 16 C -0.118 4.118 17 C -0.118 4.118 18 C 0.064 3.936 19 H 0.057 0.943 20 C -0.096 4.096 21 C 0.069 3.931 22 O -0.594 6.594 23 C -0.073 4.073 24 C -0.245 4.245 25 H 0.287 0.713 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.394 0.606 41 H 0.110 0.890 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 -13.068 -6.119 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.077 3.923 10 C -0.209 4.209 11 C -0.112 4.112 12 C -0.192 4.192 13 C -0.016 4.016 14 N -0.243 5.243 15 C -0.090 4.090 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.044 4.044 19 H 0.075 0.925 20 C -0.134 4.134 21 C -0.008 4.008 22 O -0.402 6.402 23 C -0.092 4.092 24 C -0.264 4.264 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.243 0.757 41 H 0.128 0.872 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.163 -13.054 -6.649 14.988 hybrid contribution -0.566 1.338 0.882 1.700 sum -3.729 -11.716 -5.767 13.581 Atomic orbital electron populations 1.69888 1.08969 1.30364 1.36084 1.26720 0.95468 1.04397 0.91203 0.85193 0.79397 0.76316 0.78998 1.18339 1.18829 1.18936 1.19846 0.98263 0.92745 1.42495 0.91027 1.17947 0.91995 0.92993 0.89388 1.21234 1.00224 0.97015 1.02398 1.20703 0.98602 0.92643 0.99292 1.19238 1.00550 0.93536 1.05849 1.20985 0.94300 0.93886 0.92431 1.64706 1.55974 1.01749 1.01908 1.23148 0.98269 0.96840 0.90712 1.22464 1.02013 0.94366 0.96745 1.22421 1.02687 0.97803 0.92694 1.22390 0.96382 0.88944 0.96705 0.92501 1.21462 0.99939 0.98358 0.93622 1.22420 0.91972 0.91056 0.95329 1.86389 1.65795 1.59994 1.28011 1.20578 0.94977 0.96384 0.97258 1.21154 1.04274 0.93380 1.07627 0.90228 0.88420 0.88312 0.95034 0.89879 0.94034 0.92459 0.91438 0.89521 0.89881 0.89818 0.90092 0.92232 0.93650 0.93047 0.75685 0.87234 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.11 10.95 21.83 0.24 -43.87 16 2 C 0.04 1.89 5.14 85.26 0.44 2.33 16 3 Si 0.98 39.08 29.60 68.60 2.03 41.11 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.50 -28.10 9.05 23.46 0.21 -27.89 16 8 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 9 C 0.08 4.40 5.58 -21.29 -0.12 4.28 16 10 C -0.19 -10.17 8.70 22.73 0.20 -9.97 16 11 C -0.09 -4.34 8.78 22.22 0.20 -4.15 16 12 C -0.19 -8.01 5.18 -19.68 -0.10 -8.11 16 13 C 0.11 3.63 4.38 85.56 0.37 4.01 16 14 N -0.52 -15.47 4.70 -862.62 -4.06 -19.53 16 15 C 0.04 1.10 5.67 86.65 0.49 1.59 16 16 C -0.12 -2.56 7.06 31.80 0.22 -2.33 16 17 C -0.12 -2.21 6.57 31.47 0.21 -2.01 16 18 C 0.06 1.47 2.61 45.06 0.12 1.59 16 19 H 0.06 1.23 7.77 -2.39 -0.02 1.21 16 20 C -0.10 -2.21 5.05 30.59 0.15 -2.05 16 21 C 0.07 1.64 5.90 71.98 0.42 2.06 16 22 O -0.59 -14.01 13.66 -148.98 -2.03 -16.04 16 23 C -0.07 -3.27 9.67 22.22 0.21 -3.05 16 24 C -0.24 -12.43 9.80 22.73 0.22 -12.21 16 25 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 26 H 0.10 5.51 6.16 -2.91 -0.02 5.50 16 27 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 28 H 0.03 1.00 7.77 -2.38 -0.02 0.98 16 29 H 0.08 2.47 5.17 -2.39 -0.01 2.46 16 30 H 0.04 1.16 7.81 -2.38 -0.02 1.14 16 31 H 0.06 1.97 7.83 -2.39 -0.02 1.95 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.08 1.40 7.69 -2.38 -0.02 1.38 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.24 5.79 -2.38 -0.01 1.23 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.39 5.91 9.12 -74.05 -0.68 5.23 16 41 H 0.11 4.26 7.92 -2.91 -0.02 4.24 16 42 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -62.92 333.56 -0.24 -63.16 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.33 Total: 31.09 kcal Atomic # 6 Polarization: -59.17 SS G_CDS: 3.25 Total: -55.91 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -3.82 Total: -63.41 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -2.03 Total: -16.04 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -62.92 -0.24 -63.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399021662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.138 kcal (2) G-P(sol) polarization free energy of solvation -62.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds