Wall clock time and date at job start Mon Mar 30 2020 01:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86790 * 120.00342 * 2 1 4 4 H 1.48502 * 109.47543 * 270.00284 * 3 2 1 5 5 H 1.48504 * 109.47106 * 29.99827 * 3 2 1 6 6 H 1.48503 * 109.47343 * 150.00002 * 3 2 1 7 7 C 1.39954 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99483 * 197.91076 * 7 2 1 9 9 C 1.41391 * 120.00227 * 17.90932 * 7 2 1 10 10 C 1.40716 * 120.24648 * 205.71489 * 9 7 2 11 11 C 1.37617 * 119.74587 * 179.97438 * 10 9 7 12 12 C 1.38630 * 120.24777 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.74938 * 179.97438 * 12 11 10 14 14 N 1.46897 * 109.47203 * 95.27372 * 13 12 11 15 15 C 1.47846 * 110.99850 * 297.13476 * 14 13 12 16 16 C 1.54903 * 104.89333 * 213.57990 * 15 14 13 17 17 C 1.55425 * 101.52072 * 37.06704 * 16 15 14 18 18 C 1.47440 * 110.99984 * 176.29550 * 14 13 12 19 19 H 1.08996 * 109.88517 * 242.66439 * 18 14 13 20 20 C 1.53001 * 109.88708 * 3.68768 * 18 14 13 21 21 C 1.53004 * 109.47056 * 182.42615 * 20 18 14 22 22 O 1.42896 * 109.47386 * 183.55582 * 21 20 18 23 23 C 1.38634 * 120.50297 * 0.27476 * 12 11 10 24 24 C 1.37618 * 120.24901 * 359.44117 * 23 12 11 25 25 H 0.96998 * 119.99352 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.12409 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.87345 * 180.02562 * 11 10 9 28 28 H 1.08999 * 109.46824 * 335.27353 * 13 12 11 29 29 H 1.08997 * 109.46895 * 215.27948 * 13 12 11 30 30 H 1.09001 * 110.37986 * 332.46796 * 15 14 13 31 31 H 1.09001 * 110.37444 * 94.69455 * 15 14 13 32 32 H 1.09002 * 110.99135 * 155.21706 * 16 15 14 33 33 H 1.08997 * 110.99442 * 279.03675 * 16 15 14 34 34 H 1.09002 * 110.69562 * 205.97526 * 17 16 15 35 35 H 1.09001 * 110.69519 * 82.75728 * 17 16 15 36 36 H 1.09001 * 109.47176 * 302.42429 * 20 18 14 37 37 H 1.08997 * 109.47116 * 62.43026 * 20 18 14 38 38 H 1.09006 * 109.46808 * 303.55950 * 21 20 18 39 39 H 1.09001 * 109.47302 * 63.55476 * 21 20 18 40 40 H 0.96696 * 114.00350 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.87382 * 179.71191 * 23 12 11 42 42 H 1.07993 * 120.13101 * 180.27431 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4400 0.7000 7 6 2.0080 -1.2121 -0.0005 8 1 3.0487 -1.2349 0.2871 9 6 1.3524 -2.4067 -0.3776 10 6 1.8087 -3.6479 0.1034 11 6 1.1625 -4.8042 -0.2698 12 6 0.0663 -4.7494 -1.1167 13 6 -0.6325 -6.0227 -1.5186 14 7 -1.7783 -6.2542 -0.6290 15 6 -1.3342 -6.4456 0.7681 16 6 -2.3378 -7.4608 1.3694 17 6 -2.5856 -8.4056 0.1605 18 6 -2.5395 -7.4458 -1.0470 19 1 -3.5517 -7.1583 -1.3310 20 6 -1.8401 -8.1224 -2.2277 21 6 -2.6689 -9.3217 -2.6923 22 8 -1.9758 -10.0025 -3.7402 23 6 -0.3882 -3.5328 -1.6016 24 6 0.2389 -2.3632 -1.2370 25 1 -0.4849 0.8401 0.0004 26 1 2.6628 -3.6928 0.7628 27 1 1.5108 -5.7579 0.0984 28 1 0.0626 -6.8587 -1.4409 29 1 -0.9827 -5.9358 -2.5471 30 1 -0.3230 -6.8517 0.7927 31 1 -1.3767 -5.5021 1.3124 32 1 -1.8932 -8.0011 2.2052 33 1 -3.2599 -6.9651 1.6732 34 1 -3.5632 -8.8814 0.2374 35 1 -1.7963 -9.1539 0.0883 36 1 -1.7401 -7.4106 -3.0472 37 1 -0.8516 -8.4618 -1.9185 38 1 -2.8224 -10.0032 -1.8555 39 1 -3.6346 -8.9753 -3.0605 40 1 -2.4438 -10.7757 -4.0838 41 1 -1.2403 -3.5023 -2.2645 42 1 -0.1195 -1.4162 -1.6124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399021668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:12 Heat of formation + Delta-G solvation = -34.902877 kcal Electronic energy + Delta-G solvation = -21155.778462 eV Core-core repulsion = 18099.791191 eV Total energy + Delta-G solvation = -3055.987271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.58178 -37.41430 -36.79586 -33.91413 -32.24308 -32.03272 -29.52497 -29.14873 -26.90128 -26.23627 -23.57683 -22.94516 -21.22078 -20.70558 -20.14487 -18.89116 -17.43158 -17.23676 -16.16449 -15.39726 -15.29613 -15.21142 -14.51212 -14.06077 -13.86190 -13.50417 -13.31040 -12.97791 -12.56200 -12.25637 -12.15975 -11.95392 -11.83834 -11.49152 -11.23369 -11.10028 -10.99936 -10.89746 -10.81133 -10.63580 -10.56531 -10.38978 -10.28202 -10.02298 -9.50052 -9.30184 -9.08240 -7.86063 -7.38084 -7.23058 -6.71259 -4.30079 2.79026 3.09605 3.12857 3.13389 3.21657 3.96732 3.99543 4.37111 4.64312 4.75989 4.91025 4.95498 5.09380 5.10775 5.30701 5.49991 5.54161 5.60182 5.74892 5.81038 5.83697 5.87212 5.94638 5.96371 6.09324 6.23437 6.35743 6.38319 6.43679 6.45440 6.54637 7.00854 7.12147 7.32601 7.36565 7.42207 7.47872 7.54235 7.67630 7.93451 8.10712 8.20701 8.35672 8.69932 8.94679 9.03340 10.23865 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032178 B = 0.003667 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.952441 B = 7633.560570 C = 7922.575565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.227 4.227 11 C -0.084 4.084 12 C -0.208 4.208 13 C 0.112 3.888 14 N -0.515 5.515 15 C 0.051 3.949 16 C -0.131 4.131 17 C -0.139 4.139 18 C 0.074 3.926 19 H 0.081 0.919 20 C -0.138 4.138 21 C 0.078 3.922 22 O -0.575 6.575 23 C -0.079 4.079 24 C -0.166 4.166 25 H 0.280 0.720 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.376 0.624 41 H 0.087 0.913 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 -14.064 -1.683 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.111 3.889 10 C -0.246 4.246 11 C -0.103 4.103 12 C -0.209 4.209 13 C -0.014 4.014 14 N -0.239 5.239 15 C -0.076 4.076 16 C -0.170 4.170 17 C -0.177 4.177 18 C -0.035 4.035 19 H 0.099 0.901 20 C -0.176 4.176 21 C -0.001 4.001 22 O -0.380 6.380 23 C -0.098 4.098 24 C -0.185 4.185 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.222 0.778 41 H 0.105 0.895 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.488 -12.972 -1.589 14.591 hybrid contribution 0.396 -0.331 0.063 0.520 sum -6.092 -13.304 -1.527 14.712 Atomic orbital electron populations 1.69843 1.07525 1.29103 1.35309 1.25891 0.94696 1.01182 0.92339 0.86348 0.80498 0.80780 0.79273 1.19318 1.20383 1.18697 1.19582 0.98121 0.91372 1.40536 0.90576 1.17604 0.91009 0.91932 0.88389 1.20931 1.04073 0.92996 1.06629 1.20352 0.96028 0.96124 0.97823 1.18906 1.00687 0.93175 1.08165 1.21000 0.89753 0.95003 0.95647 1.63919 1.23531 1.34098 1.02324 1.22954 0.96352 0.99051 0.89249 1.22775 1.00162 0.96968 0.97057 1.22953 1.01574 0.97880 0.95301 1.22389 0.98579 0.89444 0.93067 0.90080 1.22177 0.99817 0.96521 0.99128 1.22206 0.94716 0.93967 0.89163 1.86508 1.50277 1.46234 1.55022 1.20478 0.97727 0.92486 0.99095 1.21259 0.99704 0.96617 1.00930 0.90953 0.89260 0.90092 0.95519 0.91346 0.93805 0.89963 0.91265 0.90874 0.91314 0.91607 0.90147 0.91026 0.93735 0.93689 0.77753 0.89510 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.87 11.05 55.55 0.61 -20.26 16 2 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 3 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.47 -12.59 9.05 -37.74 -0.34 -12.93 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.11 3.06 5.56 -106.82 -0.59 2.47 16 10 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 11 C -0.08 -1.90 8.79 -39.66 -0.35 -2.25 16 12 C -0.21 -4.56 4.88 -104.33 -0.51 -5.07 16 13 C 0.11 2.03 3.81 -4.97 -0.02 2.01 16 14 N -0.52 -8.60 5.20 -224.79 -1.17 -9.77 16 15 C 0.05 0.83 5.60 -2.30 -0.01 0.81 16 16 C -0.13 -1.63 7.10 -24.44 -0.17 -1.80 16 17 C -0.14 -1.55 5.44 -24.75 -0.13 -1.68 16 18 C 0.07 0.97 3.48 -66.73 -0.23 0.74 16 19 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 20 C -0.14 -1.75 3.73 -26.73 -0.10 -1.85 16 21 C 0.08 0.79 6.92 37.16 0.26 1.04 16 22 O -0.58 -6.22 13.66 -35.23 -0.48 -6.70 16 23 C -0.08 -1.88 9.69 -39.66 -0.38 -2.27 16 24 C -0.17 -4.38 8.69 -38.87 -0.34 -4.72 16 25 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 26 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 27 H 0.08 1.64 7.60 -52.49 -0.40 1.24 16 28 H 0.03 0.47 6.61 -51.93 -0.34 0.13 16 29 H 0.07 1.20 6.38 -51.93 -0.33 0.87 16 30 H 0.04 0.72 6.92 -51.93 -0.36 0.36 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 36 H 0.08 1.12 6.33 -51.93 -0.33 0.79 16 37 H 0.07 0.99 6.92 -51.93 -0.36 0.63 16 38 H 0.04 0.39 7.26 -51.93 -0.38 0.01 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.38 2.16 9.12 45.56 0.42 2.57 16 41 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 42 H 0.11 3.12 6.26 -52.49 -0.33 2.79 16 LS Contribution 330.85 15.07 4.99 4.99 Total: -1.00 -29.16 330.85 -10.23 -39.38 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.75 Total: 8.08 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -3.40 Total: -29.65 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: -0.56 Total: -30.02 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.48 Total: -6.70 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.16 -10.23 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399021668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.482 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds