Wall clock time and date at job start Mon Mar 30 2020 01:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86790 * 120.00342 * 2 1 4 4 H 1.48502 * 109.47543 * 270.00284 * 3 2 1 5 5 H 1.48504 * 109.47106 * 29.99827 * 3 2 1 6 6 H 1.48503 * 109.47343 * 150.00002 * 3 2 1 7 7 C 1.39954 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99483 * 197.91076 * 7 2 1 9 9 C 1.41391 * 120.00227 * 17.90932 * 7 2 1 10 10 C 1.40716 * 120.24648 * 205.71489 * 9 7 2 11 11 C 1.37617 * 119.74587 * 179.97438 * 10 9 7 12 12 C 1.38630 * 120.24777 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.74938 * 179.97438 * 12 11 10 14 14 N 1.46897 * 109.47203 * 95.27372 * 13 12 11 15 15 C 1.47846 * 110.99850 * 297.13476 * 14 13 12 16 16 C 1.54903 * 104.89333 * 213.57990 * 15 14 13 17 17 C 1.55425 * 101.52072 * 37.06704 * 16 15 14 18 18 C 1.47440 * 110.99984 * 176.29550 * 14 13 12 19 19 H 1.08996 * 109.88517 * 242.66439 * 18 14 13 20 20 C 1.53001 * 109.88708 * 3.68768 * 18 14 13 21 21 C 1.53004 * 109.47056 * 182.42615 * 20 18 14 22 22 O 1.42896 * 109.47386 * 183.55582 * 21 20 18 23 23 C 1.38634 * 120.50297 * 0.27476 * 12 11 10 24 24 C 1.37618 * 120.24901 * 359.44117 * 23 12 11 25 25 H 0.96998 * 119.99352 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.12409 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.87345 * 180.02562 * 11 10 9 28 28 H 1.08999 * 109.46824 * 335.27353 * 13 12 11 29 29 H 1.08997 * 109.46895 * 215.27948 * 13 12 11 30 30 H 1.09001 * 110.37986 * 332.46796 * 15 14 13 31 31 H 1.09001 * 110.37444 * 94.69455 * 15 14 13 32 32 H 1.09002 * 110.99135 * 155.21706 * 16 15 14 33 33 H 1.08997 * 110.99442 * 279.03675 * 16 15 14 34 34 H 1.09002 * 110.69562 * 205.97526 * 17 16 15 35 35 H 1.09001 * 110.69519 * 82.75728 * 17 16 15 36 36 H 1.09001 * 109.47176 * 302.42429 * 20 18 14 37 37 H 1.08997 * 109.47116 * 62.43026 * 20 18 14 38 38 H 1.09006 * 109.46808 * 303.55950 * 21 20 18 39 39 H 1.09001 * 109.47302 * 63.55476 * 21 20 18 40 40 H 0.96696 * 114.00350 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.87382 * 179.71191 * 23 12 11 42 42 H 1.07993 * 120.13101 * 180.27431 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4400 0.7000 7 6 2.0080 -1.2121 -0.0005 8 1 3.0487 -1.2349 0.2871 9 6 1.3524 -2.4067 -0.3776 10 6 1.8087 -3.6479 0.1034 11 6 1.1625 -4.8042 -0.2698 12 6 0.0663 -4.7494 -1.1167 13 6 -0.6325 -6.0227 -1.5186 14 7 -1.7783 -6.2542 -0.6290 15 6 -1.3342 -6.4456 0.7681 16 6 -2.3378 -7.4608 1.3694 17 6 -2.5856 -8.4056 0.1605 18 6 -2.5395 -7.4458 -1.0470 19 1 -3.5517 -7.1583 -1.3310 20 6 -1.8401 -8.1224 -2.2277 21 6 -2.6689 -9.3217 -2.6923 22 8 -1.9758 -10.0025 -3.7402 23 6 -0.3882 -3.5328 -1.6016 24 6 0.2389 -2.3632 -1.2370 25 1 -0.4849 0.8401 0.0004 26 1 2.6628 -3.6928 0.7628 27 1 1.5108 -5.7579 0.0984 28 1 0.0626 -6.8587 -1.4409 29 1 -0.9827 -5.9358 -2.5471 30 1 -0.3230 -6.8517 0.7927 31 1 -1.3767 -5.5021 1.3124 32 1 -1.8932 -8.0011 2.2052 33 1 -3.2599 -6.9651 1.6732 34 1 -3.5632 -8.8814 0.2374 35 1 -1.7963 -9.1539 0.0883 36 1 -1.7401 -7.4106 -3.0472 37 1 -0.8516 -8.4618 -1.9185 38 1 -2.8224 -10.0032 -1.8555 39 1 -3.6346 -8.9753 -3.0605 40 1 -2.4438 -10.7757 -4.0838 41 1 -1.2403 -3.5023 -2.2645 42 1 -0.1195 -1.4162 -1.6124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399021668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:11 Heat of formation + Delta-G solvation = -54.101170 kcal Electronic energy + Delta-G solvation = -21156.610962 eV Core-core repulsion = 18099.791191 eV Total energy + Delta-G solvation = -3056.819771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80567 -39.16361 -37.66823 -35.74882 -33.62153 -33.15842 -31.31050 -30.97572 -28.01455 -27.82462 -25.22193 -23.88056 -22.94133 -22.25500 -21.59704 -20.15402 -19.20721 -18.25015 -17.34419 -17.04336 -16.56512 -16.27583 -15.88038 -15.67949 -15.51384 -14.90320 -14.48888 -14.23765 -14.15452 -13.81167 -13.58220 -13.41471 -13.29239 -12.97699 -12.83192 -12.68815 -12.33322 -12.17991 -12.01107 -11.98252 -11.86300 -11.64237 -11.56453 -11.34847 -11.20098 -10.99944 -10.80636 -9.33868 -9.26349 -9.05333 -8.62550 -6.32445 0.96002 1.15311 1.37355 1.50805 1.51262 2.21113 2.68794 3.11505 3.38064 3.68075 3.78705 3.87056 4.07312 4.13954 4.26101 4.34197 4.34530 4.40441 4.53802 4.55843 4.57384 4.61910 4.72593 4.82593 4.85904 4.95086 5.03600 5.06407 5.13002 5.16915 5.18614 5.26364 5.37268 5.43771 5.47286 5.72131 5.94004 6.09531 6.13876 6.28496 6.32595 6.40170 6.71866 6.93750 6.95382 7.05295 8.35079 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032178 B = 0.003667 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.952441 B = 7633.560570 C = 7922.575565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.081 3.919 10 C -0.242 4.242 11 C -0.083 4.083 12 C -0.196 4.196 13 C 0.123 3.877 14 N -0.535 5.535 15 C 0.047 3.953 16 C -0.124 4.124 17 C -0.128 4.128 18 C 0.074 3.926 19 H 0.088 0.912 20 C -0.135 4.135 21 C 0.082 3.918 22 O -0.599 6.599 23 C -0.086 4.086 24 C -0.188 4.188 25 H 0.287 0.713 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.398 0.602 41 H 0.100 0.900 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 -16.010 -1.670 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.535 4.535 8 H 0.091 0.909 9 C 0.079 3.921 10 C -0.262 4.262 11 C -0.102 4.102 12 C -0.197 4.197 13 C -0.004 4.004 14 N -0.259 5.259 15 C -0.080 4.080 16 C -0.162 4.162 17 C -0.166 4.166 18 C -0.034 4.034 19 H 0.106 0.894 20 C -0.173 4.173 21 C 0.004 3.996 22 O -0.408 6.408 23 C -0.105 4.105 24 C -0.208 4.208 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.248 0.752 41 H 0.118 0.882 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.426 -14.956 -1.582 16.773 hybrid contribution 0.610 0.119 0.028 0.622 sum -6.816 -14.837 -1.554 16.402 Atomic orbital electron populations 1.69900 1.09026 1.30449 1.35898 1.26758 0.95475 1.04490 0.91248 0.85205 0.79053 0.75931 0.79495 1.18706 1.19192 1.18229 1.19821 0.98320 0.92684 1.42677 0.90853 1.17935 0.91847 0.93038 0.89297 1.21138 1.04664 0.93300 1.07052 1.20627 0.95703 0.96501 0.97325 1.19348 0.99950 0.94294 1.06108 1.20863 0.90380 0.92995 0.96188 1.63760 1.22820 1.36940 1.02342 1.22911 0.97427 0.98596 0.89094 1.22747 0.99138 0.96274 0.98041 1.22927 1.03447 0.97165 0.93091 1.22451 0.98077 0.88643 0.94219 0.89384 1.22075 0.99655 0.97323 0.98253 1.22150 0.94331 0.93306 0.89838 1.86445 1.51429 1.47552 1.55355 1.20691 0.97951 0.92543 0.99315 1.21210 1.00648 0.96818 1.02094 0.90238 0.88768 0.87408 0.94624 0.90821 0.94329 0.93276 0.89472 0.90672 0.88466 0.90957 0.91937 0.92349 0.91779 0.92356 0.75249 0.88217 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.04 11.05 21.83 0.24 -44.80 16 2 C 0.03 1.83 5.13 85.26 0.44 2.26 16 3 Si 0.98 39.58 29.59 68.60 2.03 41.61 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.51 -28.43 9.05 23.46 0.21 -28.21 16 8 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 9 C 0.08 4.58 5.56 -21.29 -0.12 4.46 16 10 C -0.24 -12.40 9.80 22.73 0.22 -12.17 16 11 C -0.08 -3.75 8.79 22.22 0.20 -3.55 16 12 C -0.20 -8.59 4.88 -19.67 -0.10 -8.69 16 13 C 0.12 4.31 3.81 85.56 0.33 4.64 16 14 N -0.53 -17.16 5.20 -865.09 -4.50 -21.66 16 15 C 0.05 1.48 5.60 86.77 0.49 1.96 16 16 C -0.12 -2.74 7.10 32.08 0.23 -2.51 16 17 C -0.13 -2.37 5.44 31.88 0.17 -2.20 16 18 C 0.07 1.74 3.48 45.26 0.16 1.90 16 19 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 20 C -0.13 -3.09 3.73 30.60 0.11 -2.98 16 21 C 0.08 1.39 6.92 71.98 0.50 1.88 16 22 O -0.60 -11.34 13.66 -148.98 -2.03 -13.38 16 23 C -0.09 -4.21 9.69 22.22 0.22 -3.99 16 24 C -0.19 -10.39 8.69 22.73 0.20 -10.19 16 25 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 26 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 27 H 0.11 4.24 7.60 -2.91 -0.02 4.22 16 28 H 0.04 1.20 6.61 -2.39 -0.02 1.18 16 29 H 0.07 2.52 6.38 -2.39 -0.02 2.50 16 30 H 0.04 1.22 6.92 -2.39 -0.02 1.21 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.29 7.79 -2.39 -0.02 1.27 16 36 H 0.06 1.64 6.33 -2.39 -0.02 1.63 16 37 H 0.06 1.49 6.92 -2.39 -0.02 1.47 16 38 H 0.06 0.85 7.26 -2.38 -0.02 0.83 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.40 3.40 9.12 -74.06 -0.68 2.72 16 41 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 42 H 0.10 5.52 6.26 -2.91 -0.02 5.51 16 Total: -1.00 -65.33 330.85 -0.68 -66.01 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.33 Total: 29.61 kcal Atomic # 6 Polarization: -60.64 SS G_CDS: 3.25 Total: -57.39 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -4.26 Total: -66.46 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -2.03 Total: -13.38 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -65.33 -0.68 -66.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399021668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.912 kcal (2) G-P(sol) polarization free energy of solvation -65.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds