Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47324 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47188 * 300.00603 * 3 2 1 6 6 H 1.48503 * 109.47122 * 59.99901 * 3 2 1 7 7 C 1.37875 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99688 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00607 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47488 * 180.02562 * 9 7 2 11 11 C 1.53120 * 109.52400 * 184.99774 * 10 9 7 12 12 C 1.53037 * 109.28088 * 182.37462 * 11 10 9 13 13 N 1.46857 * 109.52299 * 59.17831 * 12 11 10 14 14 C 1.46890 * 110.99941 * 174.15959 * 13 12 11 15 15 C 1.50698 * 109.47146 * 169.99847 * 14 13 12 16 16 C 1.38289 * 119.97869 * 270.23400 * 15 14 13 17 17 C 1.38237 * 120.11494 * 180.27323 * 16 15 14 18 18 C 1.38167 * 120.05858 * 359.74537 * 17 16 15 19 19 C 1.38709 * 119.93745 * 0.02562 * 18 17 16 20 20 O 1.35906 * 120.05198 * 179.97438 * 19 18 17 21 21 C 1.38125 * 119.96886 * 89.99848 * 15 14 13 22 22 C 1.46842 * 111.19636 * 298.26071 * 13 12 11 23 23 C 1.53044 * 109.52784 * 61.74197 * 22 13 12 24 24 H 0.97007 * 119.99466 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47266 * 59.99600 * 9 7 2 26 26 H 1.09007 * 109.46866 * 300.00166 * 9 7 2 27 27 H 1.08995 * 109.52217 * 305.12244 * 10 9 7 28 28 H 1.09000 * 109.50203 * 62.43097 * 11 10 9 29 29 H 1.09005 * 109.53566 * 302.33671 * 11 10 9 30 30 H 1.09000 * 109.46342 * 299.16511 * 12 11 10 31 31 H 1.08996 * 109.45874 * 179.18720 * 12 11 10 32 32 H 1.09004 * 109.47265 * 50.00229 * 14 13 12 33 33 H 1.08998 * 109.47715 * 290.00258 * 14 13 12 34 34 H 1.08001 * 119.93832 * 0.02562 * 16 15 14 35 35 H 1.08006 * 119.97237 * 179.77245 * 17 16 15 36 36 H 1.07993 * 120.03379 * 179.97438 * 18 17 16 37 37 H 0.96696 * 114.00369 * 270.02003 * 20 19 18 38 38 H 1.08002 * 120.03152 * 0.02562 * 21 15 14 39 39 H 1.08999 * 109.46160 * 181.75372 * 22 13 12 40 40 H 1.09000 * 109.46292 * 301.72352 * 22 13 12 41 41 H 1.08994 * 109.50650 * 180.87956 * 23 22 13 42 42 H 1.08999 * 109.53178 * 60.77517 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4850 -4.9852 -0.1284 12 6 2.4793 -6.1470 -0.0680 13 7 3.2101 -6.1018 1.2050 14 6 4.0742 -7.2798 1.3581 15 6 4.9842 -7.0848 2.5433 16 6 6.2180 -6.4831 2.3756 17 6 7.0573 -6.3079 3.4599 18 6 6.6631 -6.7290 4.7154 19 6 5.4241 -7.3285 4.8871 20 8 5.0341 -7.7441 6.1209 21 6 4.5831 -7.5028 3.7973 22 6 3.9854 -4.8609 1.3284 23 6 3.0361 -3.6606 1.3097 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5563 -0.8920 26 1 0.6240 -2.5575 0.8881 27 1 2.9318 -3.5545 -0.8411 28 1 0.9538 -5.0099 -1.0798 29 1 0.7704 -5.0749 0.6898 30 1 3.1847 -6.0647 -0.8948 31 1 1.9397 -7.0910 -0.1435 32 1 4.6739 -7.4101 0.4572 33 1 3.4576 -8.1648 1.5151 34 1 6.5279 -6.1532 1.3951 35 1 8.0219 -5.8410 3.3257 36 1 7.3193 -6.5923 5.5622 37 1 5.2834 -8.6556 6.3260 38 1 3.6181 -7.9696 3.9284 39 1 4.5398 -4.8708 2.2669 40 1 4.6838 -4.7846 0.4950 41 1 3.6131 -2.7390 1.3856 42 1 2.3463 -3.7284 2.1509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399298934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = -32.301322 kcal Electronic energy + Delta-G solvation = -21105.251393 eV Core-core repulsion = 18049.376934 eV Total energy + Delta-G solvation = -3055.874459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14130 -38.63148 -36.88128 -34.58754 -32.55012 -31.18567 -30.42214 -29.73662 -28.03146 -25.54394 -23.38800 -22.99427 -22.40150 -21.32935 -20.45709 -18.86636 -18.14477 -16.51635 -16.23360 -15.93957 -15.75951 -15.27729 -14.60276 -14.42108 -14.06087 -13.92832 -13.49974 -13.22408 -12.72795 -12.68431 -12.48001 -12.08528 -11.90736 -11.69193 -11.59790 -11.45148 -11.09294 -10.76342 -10.66066 -10.59209 -10.51242 -10.22363 -9.89703 -9.49328 -9.02572 -9.01736 -8.82755 -8.69311 -8.29092 -8.03612 -5.94143 -3.95292 1.08043 1.20034 3.33885 3.41474 3.43567 3.45160 3.99691 4.27804 4.50456 4.62485 4.74603 4.97614 5.16066 5.17619 5.37447 5.40328 5.41462 5.43994 5.54959 5.62301 5.78187 5.78454 5.85509 5.92167 6.03256 6.17692 6.24974 6.27201 6.29302 6.43172 6.49114 6.62453 6.65968 6.71737 7.02599 7.14927 7.24652 7.34520 7.41456 7.48366 7.74610 7.91498 8.07041 8.50375 9.11490 9.68068 11.17304 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.003919 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.547091 B = 7142.899686 C = 7787.635010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.059 3.941 13 N -0.530 5.530 14 C 0.091 3.909 15 C -0.060 4.060 16 C -0.120 4.120 17 C -0.105 4.105 18 C -0.148 4.148 19 C 0.101 3.899 20 O -0.499 6.499 21 C -0.124 4.124 22 C 0.052 3.948 23 C -0.099 4.099 24 H 0.258 0.742 25 H 0.014 0.986 26 H 0.017 0.983 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.387 0.613 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.071 0.929 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.414 -18.452 5.931 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.068 4.068 13 N -0.255 5.255 14 C -0.036 4.036 15 C -0.061 4.061 16 C -0.139 4.139 17 C -0.123 4.123 18 C -0.167 4.167 19 C 0.057 3.943 20 O -0.309 6.309 21 C -0.143 4.143 22 C -0.076 4.076 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.242 0.758 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.677 -17.773 6.337 22.190 hybrid contribution 1.198 0.585 -0.635 1.477 sum 12.875 -17.188 5.702 22.220 Atomic orbital electron populations 1.69982 1.06015 1.26295 1.51305 1.25017 0.94794 0.99115 0.95580 0.86604 0.80141 0.84153 0.77514 1.19812 1.21134 1.21077 1.21297 0.92949 0.91045 1.49829 0.92690 1.19119 0.93636 0.91079 0.97101 1.21236 0.97873 0.94757 0.96134 1.21690 0.97518 0.94229 1.01510 1.22127 0.96383 0.99521 0.88771 1.62105 1.27349 1.01455 1.34587 1.21094 0.93538 0.94889 0.94077 1.19675 0.94389 0.97338 0.94650 1.21141 0.94086 0.99343 0.99335 1.20987 0.99774 0.99405 0.92122 1.21398 0.95958 1.01470 0.97861 1.18468 0.92601 0.98986 0.84261 1.84860 1.81088 1.34257 1.30649 1.21293 1.00009 1.01683 0.91323 1.22341 0.95420 0.89811 0.99990 1.21545 0.97859 0.95533 0.98777 0.93183 0.96788 0.96507 0.93123 0.92095 0.91565 0.95343 0.91590 0.94134 0.90080 0.85963 0.85625 0.85651 0.75758 0.85218 0.90981 0.95656 0.91001 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.51 -14.53 8.45 -34.44 -0.29 -14.82 16 8 H 0.05 1.52 7.08 -52.48 -0.37 1.15 16 9 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 10 C -0.08 -1.70 2.20 -90.50 -0.20 -1.89 16 11 C -0.11 -1.97 5.38 -26.65 -0.14 -2.11 16 12 C 0.06 0.87 5.42 -3.83 -0.02 0.85 16 13 N -0.53 -7.85 4.80 -236.12 -1.13 -8.99 16 14 C 0.09 1.08 5.43 -4.98 -0.03 1.06 16 15 C -0.06 -0.71 4.13 -104.65 -0.43 -1.14 16 16 C -0.12 -1.33 7.77 -39.56 -0.31 -1.64 16 17 C -0.10 -1.06 10.04 -39.61 -0.40 -1.46 16 18 C -0.15 -1.53 9.99 -39.43 -0.39 -1.93 16 19 C 0.10 1.13 6.71 -39.22 -0.26 0.87 16 20 O -0.50 -5.03 13.50 -19.44 -0.26 -5.29 16 21 C -0.12 -1.45 9.64 -39.43 -0.38 -1.83 16 22 C 0.05 0.83 4.57 -3.83 -0.02 0.82 16 23 C -0.10 -1.95 5.15 -26.64 -0.14 -2.09 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.04 0.45 8.02 -51.93 -0.42 0.03 16 33 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.39 1.83 9.06 45.56 0.41 2.25 16 38 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.07 1.14 5.63 -51.93 -0.29 0.85 16 40 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 1.50 7.06 -51.93 -0.37 1.13 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -32.14 335.97 -9.93 -42.07 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.08 Total: -0.01 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -3.23 Total: -23.20 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.40 Total: -35.55 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.26 Total: -5.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.14 -9.93 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399298934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.770 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds