Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47324 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47188 * 300.00603 * 3 2 1 6 6 H 1.48503 * 109.47122 * 59.99901 * 3 2 1 7 7 C 1.37875 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99688 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00607 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47488 * 180.02562 * 9 7 2 11 11 C 1.53120 * 109.52400 * 184.99774 * 10 9 7 12 12 C 1.53037 * 109.28088 * 182.37462 * 11 10 9 13 13 N 1.46857 * 109.52299 * 59.17831 * 12 11 10 14 14 C 1.46890 * 110.99941 * 174.15959 * 13 12 11 15 15 C 1.50698 * 109.47146 * 169.99847 * 14 13 12 16 16 C 1.38289 * 119.97869 * 270.23400 * 15 14 13 17 17 C 1.38237 * 120.11494 * 180.27323 * 16 15 14 18 18 C 1.38167 * 120.05858 * 359.74537 * 17 16 15 19 19 C 1.38709 * 119.93745 * 0.02562 * 18 17 16 20 20 O 1.35906 * 120.05198 * 179.97438 * 19 18 17 21 21 C 1.38125 * 119.96886 * 89.99848 * 15 14 13 22 22 C 1.46842 * 111.19636 * 298.26071 * 13 12 11 23 23 C 1.53044 * 109.52784 * 61.74197 * 22 13 12 24 24 H 0.97007 * 119.99466 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47266 * 59.99600 * 9 7 2 26 26 H 1.09007 * 109.46866 * 300.00166 * 9 7 2 27 27 H 1.08995 * 109.52217 * 305.12244 * 10 9 7 28 28 H 1.09000 * 109.50203 * 62.43097 * 11 10 9 29 29 H 1.09005 * 109.53566 * 302.33671 * 11 10 9 30 30 H 1.09000 * 109.46342 * 299.16511 * 12 11 10 31 31 H 1.08996 * 109.45874 * 179.18720 * 12 11 10 32 32 H 1.09004 * 109.47265 * 50.00229 * 14 13 12 33 33 H 1.08998 * 109.47715 * 290.00258 * 14 13 12 34 34 H 1.08001 * 119.93832 * 0.02562 * 16 15 14 35 35 H 1.08006 * 119.97237 * 179.77245 * 17 16 15 36 36 H 1.07993 * 120.03379 * 179.97438 * 18 17 16 37 37 H 0.96696 * 114.00369 * 270.02003 * 20 19 18 38 38 H 1.08002 * 120.03152 * 0.02562 * 21 15 14 39 39 H 1.08999 * 109.46160 * 181.75372 * 22 13 12 40 40 H 1.09000 * 109.46292 * 301.72352 * 22 13 12 41 41 H 1.08994 * 109.50650 * 180.87956 * 23 22 13 42 42 H 1.08999 * 109.53178 * 60.77517 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4850 -4.9852 -0.1284 12 6 2.4793 -6.1470 -0.0680 13 7 3.2101 -6.1018 1.2050 14 6 4.0742 -7.2798 1.3581 15 6 4.9842 -7.0848 2.5433 16 6 6.2180 -6.4831 2.3756 17 6 7.0573 -6.3079 3.4599 18 6 6.6631 -6.7290 4.7154 19 6 5.4241 -7.3285 4.8871 20 8 5.0341 -7.7441 6.1209 21 6 4.5831 -7.5028 3.7973 22 6 3.9854 -4.8609 1.3284 23 6 3.0361 -3.6606 1.3097 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5563 -0.8920 26 1 0.6240 -2.5575 0.8881 27 1 2.9318 -3.5545 -0.8411 28 1 0.9538 -5.0099 -1.0798 29 1 0.7704 -5.0749 0.6898 30 1 3.1847 -6.0647 -0.8948 31 1 1.9397 -7.0910 -0.1435 32 1 4.6739 -7.4101 0.4572 33 1 3.4576 -8.1648 1.5151 34 1 6.5279 -6.1532 1.3951 35 1 8.0219 -5.8410 3.3257 36 1 7.3193 -6.5923 5.5622 37 1 5.2834 -8.6556 6.3260 38 1 3.6181 -7.9696 3.9284 39 1 4.5398 -4.8708 2.2669 40 1 4.6838 -4.7846 0.4950 41 1 3.6131 -2.7390 1.3856 42 1 2.3463 -3.7284 2.1509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399298934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = -53.262660 kcal Electronic energy + Delta-G solvation = -21106.160345 eV Core-core repulsion = 18049.376934 eV Total energy + Delta-G solvation = -3056.783411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02970 -39.81097 -37.79134 -36.10048 -34.40063 -32.39019 -31.68796 -30.67052 -29.65940 -26.96172 -25.04084 -24.15451 -23.39614 -22.54028 -21.77181 -20.42065 -18.93351 -18.43093 -17.31525 -16.99555 -16.74082 -16.45826 -16.18878 -15.65311 -15.19546 -15.16619 -14.81953 -14.60403 -14.18979 -13.99336 -13.66696 -13.36153 -13.26561 -13.08686 -12.77414 -12.67421 -12.59016 -12.42728 -12.31356 -12.12573 -11.99269 -11.65413 -11.34985 -11.25641 -10.87018 -10.69971 -10.52669 -9.83269 -9.53356 -9.14124 -8.17524 -6.27100 0.28344 0.39977 1.38780 1.39264 1.52185 2.41543 2.61774 3.14676 3.17430 3.30997 3.76519 3.97140 4.04425 4.07964 4.10651 4.23236 4.35306 4.37877 4.43007 4.55684 4.65704 4.68552 4.72209 4.78091 4.84982 4.96356 5.00756 5.07051 5.10681 5.15809 5.38043 5.41787 5.44437 5.47511 5.48558 5.57481 5.62785 5.80919 5.89254 5.92304 6.16923 6.22437 6.30752 6.89210 6.89465 7.41306 8.94719 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.003919 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.547091 B = 7142.899686 C = 7787.635010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.074 4.074 11 C -0.108 4.108 12 C 0.067 3.933 13 N -0.544 5.544 14 C 0.095 3.905 15 C -0.071 4.071 16 C -0.130 4.130 17 C -0.106 4.106 18 C -0.154 4.154 19 C 0.094 3.906 20 O -0.512 6.512 21 C -0.139 4.139 22 C 0.067 3.933 23 C -0.094 4.094 24 H 0.262 0.738 25 H -0.013 1.013 26 H -0.015 1.015 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.409 0.591 38 H 0.129 0.871 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.053 0.947 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.572 -19.312 5.952 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.093 4.093 11 C -0.146 4.146 12 C -0.060 4.060 13 N -0.269 5.269 14 C -0.032 4.032 15 C -0.071 4.071 16 C -0.149 4.149 17 C -0.123 4.123 18 C -0.173 4.173 19 C 0.049 3.951 20 O -0.325 6.325 21 C -0.158 4.158 22 C -0.061 4.061 23 C -0.132 4.132 24 H 0.070 0.930 25 H 0.006 0.994 26 H 0.003 0.997 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.268 0.732 38 H 0.147 0.853 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.850 -18.670 6.362 24.102 hybrid contribution 0.492 0.816 -0.580 1.116 sum 14.343 -17.854 5.782 23.620 Atomic orbital electron populations 1.70119 1.07805 1.27472 1.52278 1.25961 0.95701 1.03231 0.95071 0.85463 0.79190 0.79124 0.77688 1.18519 1.20397 1.20595 1.21682 0.93364 0.92158 1.49486 0.92216 1.19012 0.94024 0.93133 0.94203 1.21084 0.96901 0.94453 0.96827 1.21605 0.97875 0.93863 1.01214 1.22051 0.95920 0.98966 0.89095 1.62029 1.28203 1.01880 1.34763 1.21137 0.93556 0.93738 0.94747 1.19729 0.94813 0.97999 0.94576 1.21321 0.94060 0.99404 1.00085 1.21281 1.00526 0.98796 0.91741 1.21647 0.95943 1.01059 0.98647 1.18620 0.92891 0.99119 0.84430 1.84796 1.81355 1.36207 1.30180 1.21402 1.00285 1.02367 0.91757 1.22090 0.94403 0.88949 1.00612 1.21420 0.97818 0.96868 0.97132 0.92954 0.99445 0.99653 0.93183 0.91702 0.92904 0.94391 0.88926 0.92769 0.88671 0.85140 0.83462 0.84096 0.73235 0.85283 0.90548 0.94777 0.92808 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.44 13.29 21.45 0.28 -58.16 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.53 -30.62 8.45 25.60 0.22 -30.40 16 8 H 0.06 3.33 7.08 -2.91 -0.02 3.31 16 9 C 0.03 1.81 4.45 29.84 0.13 1.95 16 10 C -0.07 -3.13 2.20 -10.71 -0.02 -3.16 16 11 C -0.11 -3.77 5.38 30.65 0.16 -3.61 16 12 C 0.07 1.81 5.42 86.32 0.47 2.28 16 13 N -0.54 -15.05 4.80 -900.94 -4.32 -19.37 16 14 C 0.09 2.00 5.43 85.56 0.46 2.46 16 15 C -0.07 -1.52 4.13 -19.88 -0.08 -1.61 16 16 C -0.13 -2.58 7.77 22.28 0.17 -2.40 16 17 C -0.11 -1.88 10.04 22.25 0.22 -1.66 16 18 C -0.15 -2.89 9.99 22.37 0.22 -2.66 16 19 C 0.09 1.96 6.71 22.51 0.15 2.11 16 20 O -0.51 -9.60 13.50 -92.49 -1.25 -10.85 16 21 C -0.14 -3.07 9.64 22.37 0.22 -2.85 16 22 C 0.07 2.07 4.57 86.33 0.39 2.47 16 23 C -0.09 -3.75 5.15 30.65 0.16 -3.59 16 24 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 2.06 8.12 -2.39 -0.02 2.04 16 32 H 0.05 1.02 8.02 -2.38 -0.02 1.00 16 33 H 0.10 1.74 8.08 -2.39 -0.02 1.73 16 34 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.41 3.23 9.06 -74.06 -0.67 2.56 16 38 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 39 H 0.08 2.32 5.63 -2.39 -0.01 2.30 16 40 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 2.28 7.06 -2.39 -0.02 2.26 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -70.11 335.97 0.40 -69.71 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.32 Total: 11.74 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 3.34 Total: -40.36 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -4.04 Total: -77.53 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.25 Total: -10.85 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.11 0.40 -69.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399298934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.444 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds