Wall clock time and date at job start Mon Mar 30 2020 01:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 120.00128 * 2 1 4 4 H 1.48499 * 109.47341 * 240.00184 * 3 2 1 5 5 H 1.48505 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47243 * 119.99870 * 3 2 1 7 7 C 1.39947 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99537 * 190.56306 * 7 2 1 9 9 C 1.41385 * 120.00134 * 10.56890 * 7 2 1 10 10 C 1.40720 * 120.24390 * 209.57084 * 9 7 2 11 11 C 1.37614 * 119.74449 * 180.29785 * 10 9 7 12 12 C 1.38642 * 120.25141 * 359.42165 * 11 10 9 13 13 C 1.50700 * 119.75335 * 180.30338 * 12 11 10 14 14 N 1.46904 * 109.47142 * 275.64820 * 13 12 11 15 15 C 1.46900 * 110.99964 * 288.63012 * 14 13 12 16 16 C 1.52995 * 109.47039 * 169.99862 * 15 14 13 17 17 C 1.52998 * 109.47399 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.47532 * 179.97438 * 17 16 15 19 19 C 1.46890 * 110.99701 * 164.67165 * 14 13 12 20 20 C 1.52998 * 117.50196 * 7.51702 * 19 14 13 21 21 C 1.52996 * 117.50621 * 298.85426 * 19 14 13 22 22 C 1.38643 * 120.49364 * 0.60542 * 12 11 10 23 23 C 1.37616 * 120.25038 * 359.67654 * 22 12 11 24 24 H 0.96996 * 119.99914 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.12945 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.87803 * 179.72154 * 11 10 9 27 27 H 1.08997 * 109.47122 * 35.64931 * 13 12 11 28 28 H 1.08996 * 109.46842 * 155.65136 * 13 12 11 29 29 H 1.08996 * 109.47239 * 289.99972 * 15 14 13 30 30 H 1.09003 * 109.46943 * 50.00033 * 15 14 13 31 31 H 1.09006 * 109.47126 * 300.00155 * 16 15 14 32 32 H 1.08999 * 109.47297 * 59.99795 * 16 15 14 33 33 H 1.09006 * 109.47216 * 300.00232 * 17 16 15 34 34 H 1.08999 * 109.46956 * 59.99718 * 17 16 15 35 35 H 0.96699 * 113.99993 * 179.97438 * 18 17 16 36 36 H 1.09006 * 115.54700 * 153.18348 * 19 14 13 37 37 H 1.09000 * 117.50136 * 359.97438 * 20 19 14 38 38 H 1.09003 * 117.50051 * 145.01776 * 20 19 14 39 39 H 1.08994 * 117.50280 * 214.98526 * 21 19 14 40 40 H 1.09003 * 117.49301 * 359.97438 * 21 19 14 41 41 H 1.07995 * 119.87101 * 179.70540 * 22 12 11 42 42 H 1.07998 * 120.12272 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0743 -1.2198 0.1720 9 6 1.3190 -2.4261 -0.2235 10 6 1.7863 -3.6227 0.3512 11 6 1.1112 -4.7996 0.1213 12 6 -0.0319 -4.8075 -0.6631 13 6 -0.7662 -6.1016 -0.9019 14 7 -0.1433 -6.8185 -2.0227 15 6 -0.4245 -6.1469 -3.2986 16 6 0.4347 -6.7675 -4.4018 17 6 0.1414 -6.0685 -5.7308 18 8 0.9444 -6.6478 -6.7612 19 6 -0.5798 -8.2206 -2.0583 20 6 -1.6904 -8.6396 -1.0930 21 6 -0.2498 -9.0944 -0.8466 22 6 -0.5010 -3.6347 -1.2347 23 6 0.1614 -2.4471 -1.0231 24 1 -0.4850 0.8400 0.0004 25 1 2.6737 -3.6181 0.9666 26 1 1.4705 -5.7200 0.5576 27 1 -0.7174 -6.7180 -0.0043 28 1 -1.8083 -5.8893 -1.1407 29 1 -1.4787 -6.2673 -3.5480 30 1 -0.1911 -5.0858 -3.2098 31 1 1.4890 -6.6471 -4.1524 32 1 0.2014 -7.8286 -4.4906 33 1 -0.9129 -6.1894 -5.9800 34 1 0.3745 -5.0074 -5.6424 35 1 0.8099 -6.2528 -7.6335 36 1 -0.5612 -8.6939 -3.0401 37 1 -2.0970 -7.8749 -0.4312 38 1 -2.4023 -9.3888 -1.4395 39 1 -0.0144 -10.1425 -1.0310 40 1 0.2917 -8.6288 -0.0230 41 1 -1.3897 -3.6532 -1.8480 42 1 -0.2061 -1.5346 -1.4690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404207700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:00 Heat of formation + Delta-G solvation = -25.118804 kcal Electronic energy + Delta-G solvation = -21021.866128 eV Core-core repulsion = 17966.303127 eV Total energy + Delta-G solvation = -3055.563002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.41817 -38.99036 -37.92021 -35.84899 -35.11515 -33.05154 -31.31318 -31.01641 -28.34928 -26.04381 -24.82113 -23.20123 -22.96384 -22.68401 -21.79907 -20.39690 -19.18943 -18.33449 -17.51726 -17.06563 -16.91649 -16.24821 -15.97531 -15.61602 -15.32692 -15.00577 -14.54297 -14.17590 -14.08612 -13.81838 -13.75693 -13.40100 -13.24317 -12.89683 -12.70256 -12.47188 -12.30747 -12.28934 -12.09006 -12.00435 -11.95407 -11.56654 -11.30977 -11.19984 -11.17276 -11.01143 -10.85592 -9.33985 -9.15054 -8.94081 -8.56996 -6.34055 0.95531 1.17160 1.37991 1.49182 1.51667 2.22431 2.63249 2.88131 3.12577 3.46910 3.75961 3.96150 3.99870 4.12885 4.17603 4.18735 4.29338 4.32281 4.43843 4.51163 4.58654 4.64880 4.69195 4.76455 4.79538 4.82595 4.97756 5.04266 5.12487 5.18819 5.22783 5.26795 5.29987 5.38690 5.49209 5.73896 5.96231 6.12570 6.12795 6.25911 6.35361 6.42816 6.72772 6.89641 6.97481 7.05768 8.39670 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.004447 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.855593 B = 6295.267102 C = 7368.931341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.079 3.921 10 C -0.239 4.239 11 C -0.075 4.075 12 C -0.187 4.187 13 C 0.125 3.875 14 N -0.513 5.513 15 C 0.064 3.936 16 C -0.107 4.107 17 C 0.079 3.921 18 O -0.593 6.593 19 C 0.009 3.991 20 C -0.214 4.214 21 C -0.171 4.171 22 C -0.097 4.097 23 C -0.179 4.179 24 H 0.285 0.715 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.397 0.603 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 -11.686 -7.860 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.536 4.536 8 H 0.089 0.911 9 C 0.077 3.923 10 C -0.259 4.259 11 C -0.094 4.094 12 C -0.189 4.189 13 C -0.001 4.001 14 N -0.235 5.235 15 C -0.064 4.064 16 C -0.145 4.145 17 C 0.000 4.000 18 O -0.402 6.402 19 C -0.100 4.100 20 C -0.253 4.253 21 C -0.209 4.209 22 C -0.116 4.116 23 C -0.199 4.199 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.247 0.753 36 H 0.145 0.855 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.748 -11.875 -7.290 14.430 hybrid contribution -0.582 1.410 -0.247 1.545 sum -4.330 -10.466 -7.537 13.605 Atomic orbital electron populations 1.69849 1.08748 1.30207 1.37544 1.26690 0.95613 1.04236 0.91398 0.85256 0.78691 0.75830 0.79916 1.18555 1.19154 1.18602 1.19784 0.95900 0.91895 1.46045 0.91100 1.17951 0.92379 0.92931 0.89056 1.21227 1.03672 0.94100 1.06862 1.20594 0.94822 0.96136 0.97849 1.19320 0.99634 0.93956 1.05971 1.20734 0.94048 0.91613 0.93717 1.61792 1.57967 1.00647 1.03047 1.21902 0.97423 0.98661 0.88384 1.21395 1.00300 1.00393 0.92396 1.22091 0.94405 0.96054 0.87403 1.86409 1.67342 1.64750 1.21664 1.22824 1.01656 0.89312 0.96182 1.23601 0.92525 1.04554 1.04628 1.23098 0.97832 1.00228 0.99754 1.20750 0.98674 0.92680 0.99498 1.21259 0.99457 0.96788 1.02360 0.90408 0.88906 0.87287 0.90379 0.94548 0.93775 0.91781 0.92791 0.90794 0.91904 0.93819 0.75277 0.85452 0.89083 0.87285 0.86876 0.89827 0.87863 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.74 10.89 21.83 0.24 -44.51 16 2 C 0.03 1.74 5.25 85.26 0.45 2.19 16 3 Si 0.98 39.28 29.57 68.60 2.03 41.31 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.51 -28.17 9.06 23.46 0.21 -27.95 16 8 H 0.07 3.83 7.87 -2.91 -0.02 3.80 16 9 C 0.08 4.38 5.54 -21.29 -0.12 4.26 16 10 C -0.24 -12.14 9.80 22.73 0.22 -11.91 16 11 C -0.08 -3.37 9.69 22.22 0.22 -3.16 16 12 C -0.19 -7.85 4.94 -19.67 -0.10 -7.94 16 13 C 0.13 4.12 3.73 85.56 0.32 4.44 16 14 N -0.51 -15.38 4.66 -875.56 -4.08 -19.46 16 15 C 0.06 1.82 4.78 86.30 0.41 2.23 16 16 C -0.11 -2.77 5.57 30.59 0.17 -2.60 16 17 C 0.08 1.74 7.05 71.98 0.51 2.25 16 18 O -0.59 -13.10 13.66 -148.98 -2.03 -15.13 16 19 C 0.01 0.22 5.81 44.92 0.26 0.48 16 20 C -0.21 -4.46 9.54 30.62 0.29 -4.17 16 21 C -0.17 -3.71 9.95 30.62 0.30 -3.40 16 22 C -0.10 -4.43 8.20 22.22 0.18 -4.25 16 23 C -0.18 -9.51 8.65 22.73 0.20 -9.32 16 24 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 25 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 26 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 27 H 0.08 2.44 5.83 -2.39 -0.01 2.43 16 28 H 0.04 1.15 7.74 -2.39 -0.02 1.13 16 29 H 0.04 1.11 8.12 -2.39 -0.02 1.10 16 30 H 0.06 2.17 6.08 -2.39 -0.01 2.15 16 31 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.07 1.75 6.42 -2.39 -0.02 1.74 16 33 H 0.06 1.13 8.14 -2.38 -0.02 1.12 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.40 4.79 9.12 -74.06 -0.68 4.12 16 36 H 0.13 2.69 6.35 -2.38 -0.02 2.67 16 37 H 0.09 2.09 5.94 -2.39 -0.01 2.07 16 38 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.06 7.63 -2.39 -0.02 2.04 16 41 H 0.10 4.19 8.03 -2.91 -0.02 4.16 16 42 H 0.10 5.53 6.28 -2.91 -0.02 5.52 16 Total: -1.00 -62.63 338.20 0.02 -62.61 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.34 Total: 34.04 kcal Atomic # 6 Polarization: -62.38 SS G_CDS: 3.53 Total: -58.85 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -3.85 Total: -63.97 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -2.03 Total: -15.13 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -62.63 0.02 -62.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404207700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.492 kcal (2) G-P(sol) polarization free energy of solvation -62.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds