Wall clock time and date at job start Mon Mar 30 2020 01:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48498 * 109.47044 * 270.00143 * 3 2 1 5 5 H 1.48498 * 109.46822 * 30.00510 * 3 2 1 6 6 H 1.48504 * 109.46790 * 150.00005 * 3 2 1 7 7 C 1.37881 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99696 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00092 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47056 * 179.97438 * 9 7 2 11 11 C 1.46894 * 110.99815 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.06117 * 33.58243 * 11 10 9 13 13 C 1.54377 * 110.04900 * 272.10721 * 11 10 9 14 14 C 1.54883 * 104.19821 * 217.09401 * 13 11 10 15 15 C 1.54885 * 102.75311 * 37.96785 * 14 13 11 16 16 C 1.53881 * 110.03300 * 154.99743 * 11 10 9 17 17 H 1.09001 * 110.03190 * 238.61897 * 16 11 10 18 18 O 1.42898 * 110.02914 * 359.97438 * 16 11 10 19 19 C 1.42901 * 113.99647 * 209.30695 * 18 16 11 20 20 C 1.50706 * 109.46766 * 180.02562 * 19 18 16 21 21 C 1.38234 * 120.00196 * 90.00366 * 20 19 18 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 19 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38243 * 120.00092 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99618 * 359.97438 * 24 23 22 26 26 H 0.96998 * 119.99796 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47154 * 59.99804 * 9 7 2 28 28 H 1.09001 * 109.46894 * 299.99816 * 9 7 2 29 29 H 1.00901 * 110.99786 * 303.94944 * 10 9 7 30 30 H 1.09000 * 110.46250 * 98.42528 * 13 11 10 31 31 H 1.08997 * 110.61560 * 335.84026 * 13 11 10 32 32 H 1.08998 * 110.75525 * 279.64981 * 14 13 11 33 33 H 1.09003 * 110.91606 * 156.35491 * 14 13 11 34 34 H 1.09002 * 110.49189 * 203.38166 * 15 14 13 35 35 H 1.09002 * 110.48929 * 80.73277 * 15 14 13 36 36 H 1.08998 * 109.47219 * 60.00315 * 19 18 16 37 37 H 1.08998 * 109.47174 * 300.00185 * 19 18 16 38 38 H 1.08000 * 119.99516 * 0.24808 * 21 20 19 39 39 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00350 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00235 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.99804 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 5.4696 -2.6182 0.0011 12 1 5.8657 -1.7757 0.5681 13 6 6.0012 -2.5785 -1.4477 14 6 7.2319 -3.5186 -1.4267 15 6 6.7742 -4.6600 -0.4851 16 6 5.9611 -3.9423 0.6120 17 1 6.5949 -3.7423 1.4760 18 8 4.8453 -4.7463 1.0001 19 6 5.1096 -5.6125 2.1055 20 6 3.8713 -6.4090 2.4267 21 6 3.6584 -7.6315 1.8176 22 6 2.5227 -8.3623 2.1127 23 6 1.6002 -7.8709 3.0173 24 6 1.8136 -6.6489 3.6273 25 6 2.9497 -5.9185 3.3330 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8752 -0.6797 -0.8895 29 1 3.6254 -3.0955 0.7811 30 1 6.2998 -1.5652 -1.7164 31 1 5.2488 -2.9506 -2.1430 32 1 8.1026 -3.0061 -1.0176 33 1 7.4452 -3.9029 -2.4242 34 1 7.6368 -5.1658 -0.0512 35 1 6.1456 -5.3696 -1.0231 36 1 5.3946 -5.0176 2.9732 37 1 5.9219 -6.2922 1.8483 38 1 4.3816 -8.0176 1.1145 39 1 2.3563 -9.3172 1.6364 40 1 0.7127 -8.4417 3.2475 41 1 1.0926 -6.2648 4.3337 42 1 3.1163 -4.9636 3.8093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411724699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:38 Heat of formation + Delta-G solvation = -23.040665 kcal Electronic energy + Delta-G solvation = -21161.350778 eV Core-core repulsion = 18105.877891 eV Total energy + Delta-G solvation = -3055.472887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.49692 -38.70780 -36.03036 -34.00977 -32.02309 -31.77935 -30.83753 -28.14632 -27.68077 -25.81455 -25.05110 -22.53078 -21.43276 -21.11809 -20.53110 -19.50223 -17.03760 -16.89992 -16.33480 -15.67186 -15.56952 -15.00649 -14.62389 -14.48763 -14.03398 -13.80806 -13.43773 -13.31517 -13.14262 -12.70760 -12.38036 -12.28749 -11.96271 -11.72741 -11.39646 -11.10734 -10.92945 -10.87141 -10.80674 -10.76733 -10.50980 -10.30914 -10.19881 -9.73223 -9.38855 -9.12665 -8.84427 -8.76943 -8.51757 -7.27217 -5.98413 -3.95099 1.32646 1.47699 3.32742 3.39311 3.42128 3.59381 4.15989 4.47936 4.69696 4.78404 4.87441 4.89689 5.04063 5.10308 5.17088 5.26779 5.31251 5.34125 5.37557 5.43103 5.58015 5.68537 5.73517 5.78811 5.81467 5.99934 6.02535 6.09404 6.13665 6.18873 6.30125 6.43389 6.49347 6.56219 6.65588 6.70901 6.90671 7.04075 7.12731 7.37379 7.73365 8.07257 8.61509 8.77639 9.12381 9.64327 11.15151 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.005574 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.656081 B = 5022.131460 C = 6835.906536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.662 5.662 11 C 0.082 3.918 12 H 0.041 0.959 13 C -0.113 4.113 14 C -0.122 4.122 15 C -0.140 4.140 16 C 0.083 3.917 17 H 0.057 0.943 18 O -0.353 6.353 19 C 0.101 3.899 20 C -0.086 4.086 21 C -0.099 4.099 22 C -0.126 4.126 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.094 4.094 26 H 0.262 0.738 27 H -0.021 1.021 28 H 0.020 0.980 29 H 0.348 0.652 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.049 -14.293 5.217 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.548 4.548 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.296 5.296 11 C -0.029 4.029 12 H 0.059 0.941 13 C -0.151 4.151 14 C -0.160 4.160 15 C -0.178 4.178 16 C 0.025 3.975 17 H 0.075 0.925 18 O -0.271 6.271 19 C 0.024 3.976 20 C -0.086 4.086 21 C -0.117 4.117 22 C -0.144 4.144 23 C -0.135 4.135 24 C -0.139 4.139 25 C -0.112 4.112 26 H 0.072 0.928 27 H -0.003 1.003 28 H 0.038 0.962 29 H 0.169 0.831 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.647 -14.234 4.470 19.559 hybrid contribution 0.756 1.296 0.994 1.800 sum 13.402 -12.938 5.464 19.413 Atomic orbital electron populations 1.69909 1.06125 1.26677 1.51464 1.24907 0.94720 0.98825 0.94952 0.86839 0.80226 0.83998 0.78525 1.20195 1.21319 1.19376 1.21090 0.89057 0.94748 1.49893 0.90275 1.20052 0.96593 0.85549 0.94298 1.60508 1.02768 1.15775 1.50599 1.22248 0.91997 0.93208 0.95477 0.94088 1.22464 0.96589 0.98734 0.97332 1.22379 0.97906 0.96522 0.99207 1.22829 0.99043 0.98507 0.97442 1.22973 0.87358 0.91363 0.95853 0.92466 1.88107 1.35744 1.54280 1.48975 1.21335 0.94250 0.92193 0.89823 1.19582 0.96600 0.94882 0.97530 1.21008 0.97682 0.94507 0.98502 1.21096 0.94671 1.00080 0.98597 1.21170 0.98996 0.96287 0.97017 1.21163 0.97415 0.94985 1.00340 1.21110 0.93614 0.99134 0.97347 0.92791 1.00332 0.96248 0.83079 0.92293 0.89899 0.92011 0.91528 0.92238 0.90234 0.92855 0.92897 0.86198 0.86174 0.86206 0.85906 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.47 13.96 55.43 0.77 -27.69 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.51 -15.18 9.87 -34.44 -0.34 -15.52 16 8 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.16 4.15 4.34 -4.98 -0.02 4.13 16 10 N -0.66 -14.67 6.03 -106.75 -0.64 -15.32 16 11 C 0.08 1.44 3.25 -66.54 -0.22 1.23 16 12 H 0.04 0.73 7.81 -51.93 -0.41 0.33 16 13 C -0.11 -1.79 6.49 -25.02 -0.16 -1.95 16 14 C -0.12 -1.49 6.91 -24.74 -0.17 -1.66 16 15 C -0.14 -1.73 6.56 -25.07 -0.16 -1.90 16 16 C 0.08 1.20 3.36 -25.61 -0.09 1.12 16 17 H 0.06 0.73 7.81 -51.93 -0.41 0.32 16 18 O -0.35 -5.63 7.91 -35.23 -0.28 -5.91 16 19 C 0.10 1.28 5.90 36.01 0.21 1.49 16 20 C -0.09 -1.15 5.51 -104.62 -0.58 -1.73 16 21 C -0.10 -1.22 9.70 -39.58 -0.38 -1.61 16 22 C -0.13 -1.45 10.05 -39.59 -0.40 -1.85 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 25 C -0.09 -1.27 9.70 -39.58 -0.38 -1.66 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H -0.02 -0.53 7.13 -51.93 -0.37 -0.90 16 28 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 29 H 0.35 7.87 6.87 -39.29 -0.27 7.60 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 36 H 0.05 0.62 8.04 -51.93 -0.42 0.20 16 37 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -32.65 342.00 -10.16 -42.82 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.91 Total: 5.09 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -3.58 Total: -21.66 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.13 Total: -43.01 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.28 Total: -5.91 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.65 -10.16 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411724699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.776 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds