Wall clock time and date at job start Mon Mar 30 2020 01:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48498 * 109.47044 * 270.00143 * 3 2 1 5 5 H 1.48498 * 109.46822 * 30.00510 * 3 2 1 6 6 H 1.48504 * 109.46790 * 150.00005 * 3 2 1 7 7 C 1.37881 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99696 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00092 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47056 * 179.97438 * 9 7 2 11 11 C 1.46894 * 110.99815 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.06117 * 33.58243 * 11 10 9 13 13 C 1.54377 * 110.04900 * 272.10721 * 11 10 9 14 14 C 1.54883 * 104.19821 * 217.09401 * 13 11 10 15 15 C 1.54885 * 102.75311 * 37.96785 * 14 13 11 16 16 C 1.53881 * 110.03300 * 154.99743 * 11 10 9 17 17 H 1.09001 * 110.03190 * 238.61897 * 16 11 10 18 18 O 1.42898 * 110.02914 * 359.97438 * 16 11 10 19 19 C 1.42901 * 113.99647 * 209.30695 * 18 16 11 20 20 C 1.50706 * 109.46766 * 180.02562 * 19 18 16 21 21 C 1.38234 * 120.00196 * 90.00366 * 20 19 18 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 19 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38243 * 120.00092 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99618 * 359.97438 * 24 23 22 26 26 H 0.96998 * 119.99796 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47154 * 59.99804 * 9 7 2 28 28 H 1.09001 * 109.46894 * 299.99816 * 9 7 2 29 29 H 1.00901 * 110.99786 * 303.94944 * 10 9 7 30 30 H 1.09000 * 110.46250 * 98.42528 * 13 11 10 31 31 H 1.08997 * 110.61560 * 335.84026 * 13 11 10 32 32 H 1.08998 * 110.75525 * 279.64981 * 14 13 11 33 33 H 1.09003 * 110.91606 * 156.35491 * 14 13 11 34 34 H 1.09002 * 110.49189 * 203.38166 * 15 14 13 35 35 H 1.09002 * 110.48929 * 80.73277 * 15 14 13 36 36 H 1.08998 * 109.47219 * 60.00315 * 19 18 16 37 37 H 1.08998 * 109.47174 * 300.00185 * 19 18 16 38 38 H 1.08000 * 119.99516 * 0.24808 * 21 20 19 39 39 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00350 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00235 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.99804 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 5.4696 -2.6182 0.0011 12 1 5.8657 -1.7757 0.5681 13 6 6.0012 -2.5785 -1.4477 14 6 7.2319 -3.5186 -1.4267 15 6 6.7742 -4.6600 -0.4851 16 6 5.9611 -3.9423 0.6120 17 1 6.5949 -3.7423 1.4760 18 8 4.8453 -4.7463 1.0001 19 6 5.1096 -5.6125 2.1055 20 6 3.8713 -6.4090 2.4267 21 6 3.6584 -7.6315 1.8176 22 6 2.5227 -8.3623 2.1127 23 6 1.6002 -7.8709 3.0173 24 6 1.8136 -6.6489 3.6273 25 6 2.9497 -5.9185 3.3330 26 1 -0.4850 0.8400 -0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8752 -0.6797 -0.8895 29 1 3.6254 -3.0955 0.7811 30 1 6.2998 -1.5652 -1.7164 31 1 5.2488 -2.9506 -2.1430 32 1 8.1026 -3.0061 -1.0176 33 1 7.4452 -3.9029 -2.4242 34 1 7.6368 -5.1658 -0.0512 35 1 6.1456 -5.3696 -1.0231 36 1 5.3946 -5.0176 2.9732 37 1 5.9219 -6.2922 1.8483 38 1 4.3816 -8.0176 1.1145 39 1 2.3563 -9.3172 1.6364 40 1 0.7127 -8.4417 3.2475 41 1 1.0926 -6.2648 4.3337 42 1 3.1163 -4.9636 3.8093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411724699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:38 Heat of formation + Delta-G solvation = -43.297753 kcal Electronic energy + Delta-G solvation = -21162.229191 eV Core-core repulsion = 18105.877891 eV Total energy + Delta-G solvation = -3056.351300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.55761 -39.77965 -37.26832 -35.76340 -34.10151 -32.75745 -31.77391 -29.93364 -28.77863 -27.07820 -26.44541 -23.47710 -23.29227 -22.20949 -21.62830 -20.83967 -18.98535 -18.06836 -17.51845 -17.01988 -16.59841 -16.27649 -16.05772 -15.77237 -15.58821 -15.02064 -14.94394 -14.42764 -14.31711 -14.24268 -13.73823 -13.68064 -13.38986 -12.98153 -12.81068 -12.61886 -12.33288 -12.12171 -11.91242 -11.84861 -11.80496 -11.72864 -11.65484 -11.43639 -11.36241 -10.81548 -10.42153 -9.80364 -9.73142 -9.02518 -8.30674 -6.34952 0.36535 0.51704 1.32155 1.34486 1.45614 2.32831 2.57359 3.02719 3.12274 3.61530 3.64478 3.74850 3.93749 3.97656 4.15610 4.18806 4.28927 4.32451 4.36101 4.46761 4.49161 4.56999 4.66051 4.76803 4.78432 4.84228 4.85757 5.05832 5.07063 5.10025 5.13424 5.16270 5.20322 5.30997 5.48721 5.55975 5.56092 5.61910 5.68892 5.99224 6.11822 6.34270 6.64523 6.71316 6.89220 7.30130 8.86569 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.005574 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.656081 B = 5022.131460 C = 6835.906536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.526 4.526 8 H 0.030 0.970 9 C 0.177 3.823 10 N -0.673 5.673 11 C 0.071 3.929 12 H 0.042 0.958 13 C -0.116 4.116 14 C -0.110 4.110 15 C -0.133 4.133 16 C 0.083 3.917 17 H 0.079 0.921 18 O -0.383 6.383 19 C 0.101 3.899 20 C -0.104 4.104 21 C -0.110 4.110 22 C -0.131 4.131 23 C -0.123 4.123 24 C -0.137 4.137 25 C -0.119 4.119 26 H 0.268 0.732 27 H -0.020 1.020 28 H 0.021 0.979 29 H 0.341 0.659 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.750 -14.470 5.152 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.564 4.564 8 H 0.049 0.951 9 C 0.049 3.951 10 N -0.307 5.307 11 C -0.040 4.040 12 H 0.059 0.941 13 C -0.154 4.154 14 C -0.148 4.148 15 C -0.171 4.171 16 C 0.025 3.975 17 H 0.097 0.903 18 O -0.303 6.303 19 C 0.025 3.975 20 C -0.104 4.104 21 C -0.128 4.128 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.155 4.155 25 C -0.137 4.137 26 H 0.077 0.923 27 H -0.003 1.003 28 H 0.039 0.961 29 H 0.161 0.839 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.370 -14.435 4.403 21.541 hybrid contribution -0.183 1.244 1.024 1.622 sum 15.187 -13.191 5.427 20.835 Atomic orbital electron populations 1.70066 1.08190 1.28196 1.52425 1.25909 0.95677 1.03325 0.94091 0.85619 0.79181 0.78187 0.79329 1.18892 1.20354 1.17651 1.21324 0.91508 0.93217 1.50359 0.95132 1.19771 0.93605 0.87656 0.94111 1.60419 1.06158 1.13602 1.50520 1.22500 0.88851 0.95481 0.97172 0.94058 1.22448 0.97702 0.99886 0.95374 1.22358 0.96630 0.95511 1.00309 1.22795 0.99483 0.98202 0.96594 1.23036 0.87279 0.89922 0.97237 0.90256 1.88059 1.37031 1.55021 1.50148 1.21467 0.94623 0.92218 0.89223 1.19815 0.97115 0.95643 0.97836 1.21309 0.98484 0.94305 0.98656 1.21481 0.94141 1.00983 0.98224 1.21523 0.99893 0.96043 0.96651 1.21431 0.97456 0.95634 1.00935 1.21279 0.94620 0.99462 0.98327 0.92346 1.00253 0.96050 0.83859 0.92073 0.92567 0.89768 0.90048 0.89031 0.91583 0.92153 0.90508 0.84561 0.83560 0.83842 0.84863 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 2 C 0.01 0.44 5.47 84.66 0.46 0.90 16 3 Si 0.95 45.79 27.47 68.60 1.88 47.67 16 4 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 7 C -0.53 -32.50 9.87 25.60 0.25 -32.25 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 9 C 0.18 9.12 4.34 85.56 0.37 9.49 16 10 N -0.67 -30.46 6.03 -491.64 -2.96 -33.42 16 11 C 0.07 2.42 3.25 45.68 0.15 2.57 16 12 H 0.04 1.42 7.81 -2.39 -0.02 1.40 16 13 C -0.12 -3.52 6.49 31.71 0.21 -3.32 16 14 C -0.11 -2.33 6.91 31.88 0.22 -2.11 16 15 C -0.13 -2.89 6.56 31.67 0.21 -2.68 16 16 C 0.08 2.27 3.36 31.32 0.11 2.37 16 17 H 0.08 1.79 7.81 -2.39 -0.02 1.77 16 18 O -0.38 -12.08 7.91 -148.98 -1.18 -13.26 16 19 C 0.10 2.46 5.90 71.24 0.42 2.88 16 20 C -0.10 -2.79 5.51 -19.86 -0.11 -2.90 16 21 C -0.11 -2.62 9.70 22.27 0.22 -2.40 16 22 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 23 C -0.12 -2.77 10.05 22.27 0.22 -2.55 16 24 C -0.14 -3.49 10.05 22.27 0.22 -3.27 16 25 C -0.12 -3.34 9.70 22.27 0.22 -3.12 16 26 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 27 H -0.02 -1.02 7.13 -2.39 -0.02 -1.03 16 28 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 29 H 0.34 16.04 6.87 -89.69 -0.62 15.42 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 2.00 8.06 -2.39 -0.02 1.98 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 36 H 0.06 1.35 8.04 -2.39 -0.02 1.33 16 37 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 38 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 39 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -73.21 342.00 1.74 -71.47 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.31 Total: 27.71 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 3.39 Total: -39.01 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -2.66 Total: -94.58 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -1.18 Total: -13.26 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.67 kcal Total: -73.21 1.74 -71.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411724699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.170 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds