Wall clock time and date at job start Mon Mar 30 2020 01:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86792 * 119.99811 * 2 1 4 4 H 1.48504 * 109.47045 * 270.00057 * 3 2 1 5 5 H 1.48505 * 109.47341 * 29.99594 * 3 2 1 6 6 H 1.48499 * 109.47019 * 150.00149 * 3 2 1 7 7 C 1.37875 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99781 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00266 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00082 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.01911 * 33.61278 * 11 10 9 13 13 C 1.54271 * 110.07424 * 272.19447 * 11 10 9 14 14 C 1.54881 * 104.19587 * 264.30018 * 13 11 10 15 15 C 1.54886 * 102.75204 * 322.06122 * 14 13 11 16 16 C 1.53873 * 110.03133 * 155.00404 * 11 10 9 17 17 H 1.09000 * 110.03297 * 0.02562 * 16 11 10 18 18 O 1.42905 * 110.03082 * 238.61810 * 16 11 10 19 19 C 1.42898 * 113.99615 * 150.00063 * 18 16 11 20 20 C 1.50698 * 109.47080 * 180.02562 * 19 18 16 21 21 C 1.38239 * 120.00071 * 269.73007 * 20 19 18 22 22 C 1.38240 * 120.00057 * 179.76751 * 21 20 19 23 23 C 1.38239 * 119.99695 * 0.47634 * 22 21 20 24 24 C 1.38235 * 120.00343 * 359.79766 * 23 22 21 25 25 C 1.38239 * 120.00080 * 89.99563 * 20 19 18 26 26 H 0.97000 * 120.00114 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47147 * 60.00472 * 9 7 2 28 28 H 1.08995 * 109.47571 * 300.00074 * 9 7 2 29 29 H 1.00899 * 111.00515 * 303.95784 * 10 9 7 30 30 H 1.09000 * 110.48830 * 22.98320 * 13 11 10 31 31 H 1.09007 * 110.48277 * 145.62461 * 13 11 10 32 32 H 1.09004 * 110.75440 * 80.37427 * 14 13 11 33 33 H 1.09001 * 110.75761 * 203.55910 * 14 13 11 34 34 H 1.08998 * 110.48690 * 279.26173 * 15 14 13 35 35 H 1.09001 * 110.48714 * 156.62047 * 15 14 13 36 36 H 1.09007 * 109.47325 * 300.00090 * 19 18 16 37 37 H 1.09001 * 109.47659 * 60.00215 * 19 18 16 38 38 H 1.08000 * 119.99914 * 359.97438 * 21 20 19 39 39 H 1.07994 * 119.99776 * 180.25609 * 22 21 20 40 40 H 1.08002 * 119.99492 * 179.76911 * 23 22 21 41 41 H 1.07997 * 120.00213 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00118 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5054 -4.9070 0.0032 12 1 0.5771 -4.8289 -0.5628 13 6 1.2058 -5.3450 1.4518 14 6 2.3795 -6.2886 1.8137 15 6 2.6211 -7.0568 0.4907 16 6 2.4053 -5.9954 -0.6079 17 1 3.3618 -5.5655 -0.9053 18 8 1.7608 -6.5854 -1.7387 19 6 2.6633 -7.0604 -2.7396 20 6 1.8797 -7.6586 -3.8794 21 6 1.5590 -9.0032 -3.8670 22 6 0.8360 -9.5510 -4.9103 23 6 0.4423 -8.7562 -5.9706 24 6 0.7679 -7.4128 -5.9857 25 6 1.4864 -6.8640 -4.9400 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8400 -3.5490 -0.7804 30 1 1.1919 -4.4812 2.1164 31 1 0.2573 -5.8800 1.5001 32 1 3.2632 -5.7157 2.0946 33 1 2.0935 -6.9716 2.6136 34 1 1.9012 -7.8682 0.3838 35 1 3.6400 -7.4422 0.4539 36 1 3.2655 -6.2304 -3.1094 37 1 3.3164 -7.8196 -2.3093 38 1 1.8703 -9.6251 -3.0407 39 1 0.5819 -10.6006 -4.8986 40 1 -0.1193 -9.1850 -6.7874 41 1 0.4607 -6.7920 -6.8143 42 1 1.7410 -5.8145 -4.9519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411724702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:45 Heat of formation + Delta-G solvation = -32.674543 kcal Electronic energy + Delta-G solvation = -20714.984707 eV Core-core repulsion = 17659.094063 eV Total energy + Delta-G solvation = -3055.890643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.56871 -38.72745 -36.17980 -33.87426 -31.99233 -31.89421 -31.01326 -27.72913 -27.65285 -26.02807 -24.79581 -22.69521 -21.80766 -21.42557 -20.37440 -19.35417 -17.12901 -16.76237 -16.44284 -15.70102 -15.51504 -15.01837 -14.77144 -14.55442 -14.03478 -13.67094 -13.48092 -13.38345 -13.12668 -12.78582 -12.33369 -12.22245 -11.88228 -11.60698 -11.35673 -11.14404 -10.97877 -10.94692 -10.74802 -10.66891 -10.55493 -10.31561 -10.24629 -9.94644 -9.35240 -9.10543 -9.02901 -8.94066 -8.46714 -7.28100 -6.01231 -4.03319 1.15711 1.29181 3.32478 3.38518 3.42839 3.48440 4.05760 4.44646 4.69431 4.72202 4.86733 4.90721 4.92304 5.01505 5.18967 5.26491 5.31994 5.34554 5.41781 5.42796 5.54122 5.57955 5.80660 5.84027 5.87367 5.92787 6.00752 6.09349 6.21948 6.31762 6.37420 6.38156 6.43565 6.50731 6.62398 6.73761 6.86546 7.25580 7.42696 7.46613 7.81182 8.16020 8.39755 8.63112 9.05934 9.61370 11.09846 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.003885 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.332427 B = 7205.211083 C = 8424.906189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.680 5.680 11 C 0.084 3.916 12 H 0.050 0.950 13 C -0.109 4.109 14 C -0.115 4.115 15 C -0.141 4.141 16 C 0.082 3.918 17 H 0.068 0.932 18 O -0.374 6.374 19 C 0.101 3.899 20 C -0.086 4.086 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.097 4.097 26 H 0.261 0.739 27 H -0.013 1.013 28 H 0.029 0.971 29 H 0.326 0.674 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.997 -19.123 -7.415 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.312 5.312 11 C -0.027 4.027 12 H 0.068 0.932 13 C -0.148 4.148 14 C -0.153 4.153 15 C -0.179 4.179 16 C 0.025 3.975 17 H 0.086 0.914 18 O -0.293 6.293 19 C 0.025 3.975 20 C -0.086 4.086 21 C -0.119 4.119 22 C -0.144 4.144 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.115 4.115 26 H 0.071 0.929 27 H 0.004 0.996 28 H 0.047 0.953 29 H 0.143 0.857 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.720 -18.993 -6.744 20.495 hybrid contribution 0.250 0.949 -0.957 1.370 sum 3.971 -18.044 -7.701 20.016 Atomic orbital electron populations 1.69972 1.06066 1.26747 1.50871 1.24991 0.94868 0.99333 0.95392 0.86495 0.79794 0.83089 0.77998 1.20762 1.21245 1.19784 1.21181 0.93464 0.90267 1.50346 0.92023 1.19596 0.90567 0.87159 0.95857 1.60859 1.21033 1.00780 1.48489 1.22103 0.95883 0.89404 0.95272 0.93178 1.22315 0.96857 0.99147 0.96440 1.22350 0.99475 0.97630 0.95810 1.22806 1.01036 0.98309 0.95735 1.23121 0.95923 0.93158 0.85341 0.91361 1.88042 1.33125 1.78481 1.29647 1.21325 0.91197 0.97615 0.87413 1.19677 0.99883 0.93830 0.95180 1.21062 0.97895 0.94672 0.98223 1.21125 0.98973 0.99868 0.94462 1.21180 0.99836 0.94151 0.98483 1.21172 0.98835 0.95376 0.98761 1.21159 0.97107 0.99802 0.93477 0.92928 0.99551 0.95280 0.85682 0.90283 0.92336 0.90982 0.92156 0.90986 0.92065 0.92452 0.92713 0.86037 0.86066 0.86152 0.85902 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.69 9.32 -34.44 -0.32 -15.01 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 5.19 5.27 -4.98 -0.03 5.17 16 10 N -0.68 -14.74 6.25 -106.80 -0.67 -15.41 16 11 C 0.08 1.57 3.06 -66.59 -0.20 1.37 16 12 H 0.05 1.06 7.62 -51.93 -0.40 0.66 16 13 C -0.11 -1.85 6.50 -25.07 -0.16 -2.01 16 14 C -0.12 -1.60 6.91 -24.74 -0.17 -1.77 16 15 C -0.14 -1.85 6.56 -25.07 -0.16 -2.02 16 16 C 0.08 1.27 3.07 -25.61 -0.08 1.19 16 17 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 18 O -0.37 -5.88 9.88 -35.23 -0.35 -6.23 16 19 C 0.10 1.27 5.90 36.00 0.21 1.49 16 20 C -0.09 -1.07 5.51 -104.62 -0.58 -1.64 16 21 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 22 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H -0.01 -0.38 8.07 -51.93 -0.42 -0.80 16 28 H 0.03 0.83 7.96 -51.93 -0.41 0.42 16 29 H 0.33 6.78 8.00 -39.29 -0.31 6.46 16 30 H 0.08 1.49 7.86 -51.93 -0.41 1.09 16 31 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 37 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -31.19 347.18 -10.55 -41.74 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.93 Total: 3.98 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -3.55 Total: -19.72 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.07 Total: -41.80 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.35 Total: -6.23 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.19 -10.55 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411724702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.063 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds