Wall clock time and date at job start Mon Mar 30 2020 01:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86792 * 119.99811 * 2 1 4 4 H 1.48504 * 109.47045 * 270.00057 * 3 2 1 5 5 H 1.48505 * 109.47341 * 29.99594 * 3 2 1 6 6 H 1.48499 * 109.47019 * 150.00149 * 3 2 1 7 7 C 1.37875 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99781 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00266 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00082 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.01911 * 33.61278 * 11 10 9 13 13 C 1.54271 * 110.07424 * 272.19447 * 11 10 9 14 14 C 1.54881 * 104.19587 * 264.30018 * 13 11 10 15 15 C 1.54886 * 102.75204 * 322.06122 * 14 13 11 16 16 C 1.53873 * 110.03133 * 155.00404 * 11 10 9 17 17 H 1.09000 * 110.03297 * 0.02562 * 16 11 10 18 18 O 1.42905 * 110.03082 * 238.61810 * 16 11 10 19 19 C 1.42898 * 113.99615 * 150.00063 * 18 16 11 20 20 C 1.50698 * 109.47080 * 180.02562 * 19 18 16 21 21 C 1.38239 * 120.00071 * 269.73007 * 20 19 18 22 22 C 1.38240 * 120.00057 * 179.76751 * 21 20 19 23 23 C 1.38239 * 119.99695 * 0.47634 * 22 21 20 24 24 C 1.38235 * 120.00343 * 359.79766 * 23 22 21 25 25 C 1.38239 * 120.00080 * 89.99563 * 20 19 18 26 26 H 0.97000 * 120.00114 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47147 * 60.00472 * 9 7 2 28 28 H 1.08995 * 109.47571 * 300.00074 * 9 7 2 29 29 H 1.00899 * 111.00515 * 303.95784 * 10 9 7 30 30 H 1.09000 * 110.48830 * 22.98320 * 13 11 10 31 31 H 1.09007 * 110.48277 * 145.62461 * 13 11 10 32 32 H 1.09004 * 110.75440 * 80.37427 * 14 13 11 33 33 H 1.09001 * 110.75761 * 203.55910 * 14 13 11 34 34 H 1.08998 * 110.48690 * 279.26173 * 15 14 13 35 35 H 1.09001 * 110.48714 * 156.62047 * 15 14 13 36 36 H 1.09007 * 109.47325 * 300.00090 * 19 18 16 37 37 H 1.09001 * 109.47659 * 60.00215 * 19 18 16 38 38 H 1.08000 * 119.99914 * 359.97438 * 21 20 19 39 39 H 1.07994 * 119.99776 * 180.25609 * 22 21 20 40 40 H 1.08002 * 119.99492 * 179.76911 * 23 22 21 41 41 H 1.07997 * 120.00213 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00118 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5054 -4.9070 0.0032 12 1 0.5771 -4.8289 -0.5628 13 6 1.2058 -5.3450 1.4518 14 6 2.3795 -6.2886 1.8137 15 6 2.6211 -7.0568 0.4907 16 6 2.4053 -5.9954 -0.6079 17 1 3.3618 -5.5655 -0.9053 18 8 1.7608 -6.5854 -1.7387 19 6 2.6633 -7.0604 -2.7396 20 6 1.8797 -7.6586 -3.8794 21 6 1.5590 -9.0032 -3.8670 22 6 0.8360 -9.5510 -4.9103 23 6 0.4423 -8.7562 -5.9706 24 6 0.7679 -7.4128 -5.9857 25 6 1.4864 -6.8640 -4.9400 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8400 -3.5490 -0.7804 30 1 1.1919 -4.4812 2.1164 31 1 0.2573 -5.8800 1.5001 32 1 3.2632 -5.7157 2.0946 33 1 2.0935 -6.9716 2.6136 34 1 1.9012 -7.8682 0.3838 35 1 3.6400 -7.4422 0.4539 36 1 3.2655 -6.2304 -3.1094 37 1 3.3164 -7.8196 -2.3093 38 1 1.8703 -9.6251 -3.0407 39 1 0.5819 -10.6006 -4.8986 40 1 -0.1193 -9.1850 -6.7874 41 1 0.4607 -6.7920 -6.8143 42 1 1.7410 -5.8145 -4.9519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411724702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:44 Heat of formation + Delta-G solvation = -51.291378 kcal Electronic energy + Delta-G solvation = -20715.791993 eV Core-core repulsion = 17659.094063 eV Total energy + Delta-G solvation = -3056.697930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58728 -39.83374 -37.50298 -35.71173 -33.96296 -32.80184 -31.81685 -29.52229 -28.86312 -27.32141 -26.30926 -23.81292 -23.50440 -22.28685 -21.59786 -20.83775 -18.65302 -18.15336 -17.67012 -16.91793 -16.69991 -16.53929 -16.20465 -15.85080 -15.11887 -14.97094 -14.88740 -14.48413 -14.31486 -14.23992 -13.74436 -13.53516 -13.23788 -13.09223 -12.91518 -12.72192 -12.47239 -12.18639 -12.05941 -11.93286 -11.87681 -11.80539 -11.67158 -11.47668 -11.25643 -10.68477 -10.51016 -9.85135 -9.78737 -9.17926 -8.23977 -6.36103 0.31440 0.47043 1.39963 1.42201 1.54126 2.37937 2.52829 3.05434 3.09194 3.56625 3.63647 3.72145 3.89413 3.94208 4.08905 4.12728 4.25875 4.30682 4.32739 4.45064 4.53393 4.55497 4.63736 4.73798 4.81258 4.86110 4.96951 5.03947 5.05249 5.11036 5.12851 5.18519 5.24427 5.26344 5.46754 5.52440 5.57897 5.60845 5.65244 5.99360 6.07388 6.26366 6.39030 6.69599 6.85813 7.34985 8.87985 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.003885 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.332427 B = 7205.211083 C = 8424.906189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.212 3.788 10 N -0.671 5.671 11 C 0.077 3.923 12 H 0.016 0.984 13 C -0.111 4.111 14 C -0.106 4.106 15 C -0.129 4.129 16 C 0.089 3.911 17 H 0.074 0.926 18 O -0.396 6.396 19 C 0.099 3.901 20 C -0.108 4.108 21 C -0.109 4.109 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.134 4.134 25 C -0.122 4.122 26 H 0.265 0.735 27 H -0.048 1.048 28 H 0.000 1.000 29 H 0.331 0.669 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.137 0.863 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 -20.673 -7.628 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.085 3.915 10 N -0.302 5.302 11 C -0.034 4.034 12 H 0.034 0.966 13 C -0.150 4.150 14 C -0.143 4.143 15 C -0.167 4.167 16 C 0.031 3.969 17 H 0.092 0.908 18 O -0.316 6.316 19 C 0.023 3.977 20 C -0.108 4.108 21 C -0.127 4.127 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.151 4.151 25 C -0.140 4.140 26 H 0.074 0.926 27 H -0.030 1.030 28 H 0.018 0.982 29 H 0.149 0.851 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.203 -20.568 -6.962 22.329 hybrid contribution -0.287 1.370 -0.954 1.694 sum 4.915 -19.198 -7.916 21.340 Atomic orbital electron populations 1.70115 1.07954 1.28052 1.51433 1.26011 0.95796 1.03570 0.94483 0.85282 0.78519 0.77683 0.78500 1.19674 1.20675 1.18616 1.21533 0.93854 0.91242 1.50742 0.91492 1.19201 0.90563 0.88953 0.92823 1.60762 1.20019 1.00881 1.48571 1.22246 0.95089 0.89294 0.96728 0.96595 1.22301 0.99077 0.99112 0.94480 1.22320 0.97594 0.97245 0.97175 1.22757 1.02955 0.97359 0.93621 1.22988 0.94700 0.92981 0.86239 0.90838 1.88008 1.34603 1.78649 1.30305 1.21479 0.91078 0.98152 0.86960 1.19810 1.00959 0.94755 0.95238 1.21325 0.97956 0.94222 0.99195 1.21512 0.97967 1.01281 0.93816 1.21560 0.99326 0.93683 0.99229 1.21439 0.98546 0.96371 0.98792 1.21294 0.98426 0.99725 0.94599 0.92598 1.03035 0.98155 0.85123 0.92986 0.91512 0.91306 0.89515 0.90244 0.89210 0.92627 0.90414 0.84487 0.83314 0.83468 0.84442 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.98 44.97 29.54 68.60 2.03 47.00 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.54 -31.38 9.32 25.60 0.24 -31.14 16 8 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 9 C 0.21 11.97 5.27 85.56 0.45 12.42 16 10 N -0.67 -30.25 6.25 -491.82 -3.07 -33.32 16 11 C 0.08 2.99 3.06 45.64 0.14 3.13 16 12 H 0.02 0.73 7.62 -2.39 -0.02 0.71 16 13 C -0.11 -3.84 6.50 31.67 0.21 -3.63 16 14 C -0.11 -2.74 6.91 31.88 0.22 -2.52 16 15 C -0.13 -3.05 6.56 31.67 0.21 -2.85 16 16 C 0.09 2.69 3.07 31.32 0.10 2.78 16 17 H 0.07 2.13 7.13 -2.39 -0.02 2.11 16 18 O -0.40 -12.44 9.88 -148.98 -1.47 -13.91 16 19 C 0.10 2.44 5.90 71.24 0.42 2.86 16 20 C -0.11 -2.65 5.51 -19.86 -0.11 -2.76 16 21 C -0.11 -2.24 9.70 22.27 0.22 -2.02 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 23 C -0.12 -2.12 10.05 22.27 0.22 -1.89 16 24 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 25 C -0.12 -3.05 9.70 22.27 0.22 -2.83 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H -0.05 -2.97 8.07 -2.38 -0.02 -2.99 16 28 H 0.00 0.02 7.96 -2.39 -0.02 0.00 16 29 H 0.33 14.18 8.00 -89.69 -0.72 13.46 16 30 H 0.05 2.05 7.86 -2.39 -0.02 2.03 16 31 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.35 8.04 -2.38 -0.02 1.33 16 37 H 0.08 1.52 8.08 -2.39 -0.02 1.51 16 38 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -69.60 347.18 1.46 -68.13 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.26 Total: 22.52 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 3.43 Total: -32.59 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -2.79 Total: -91.15 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.47 Total: -13.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.60 1.46 -68.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411724702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.839 kcal (2) G-P(sol) polarization free energy of solvation -69.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds