Wall clock time and date at job start Mon Mar 30 2020 01:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99749 * 2 1 4 4 H 1.48497 * 109.47265 * 240.00079 * 3 2 1 5 5 H 1.48500 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47045 * 120.00107 * 3 2 1 7 7 C 1.37877 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99775 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47218 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00173 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.05660 * 326.41575 * 11 10 9 13 13 C 1.54267 * 110.03184 * 87.83000 * 11 10 9 14 14 C 1.54889 * 104.19385 * 142.89567 * 13 11 10 15 15 C 1.54892 * 102.74991 * 322.05789 * 14 13 11 16 16 C 1.53876 * 110.03476 * 204.99800 * 11 10 9 17 17 H 1.08999 * 110.02894 * 121.38001 * 16 11 10 18 18 O 1.42895 * 110.02782 * 0.02562 * 16 11 10 19 19 C 1.42902 * 114.00093 * 150.00248 * 18 16 11 20 20 C 1.50696 * 109.47502 * 179.97438 * 19 18 16 21 21 C 1.38239 * 119.99838 * 269.72314 * 20 19 18 22 22 C 1.38234 * 119.99897 * 179.78584 * 21 20 19 23 23 C 1.38245 * 120.00059 * 0.46674 * 22 21 20 24 24 C 1.38233 * 119.99814 * 359.76509 * 23 22 21 25 25 C 1.38236 * 120.00170 * 0.02562 * 24 23 22 26 26 H 0.96998 * 120.00558 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47391 * 59.99603 * 9 7 2 28 28 H 1.09004 * 109.47248 * 299.99729 * 9 7 2 29 29 H 1.00901 * 110.99754 * 303.95564 * 10 9 7 30 30 H 1.09005 * 110.48840 * 261.57260 * 13 11 10 31 31 H 1.09001 * 110.48280 * 24.22097 * 13 11 10 32 32 H 1.09004 * 110.75452 * 203.74370 * 14 13 11 33 33 H 1.09003 * 110.91416 * 80.44836 * 14 13 11 34 34 H 1.09000 * 110.48309 * 279.26358 * 15 14 13 35 35 H 1.09003 * 110.48387 * 156.62372 * 15 14 13 36 36 H 1.09007 * 109.46937 * 299.99683 * 19 18 16 37 37 H 1.08996 * 109.47357 * 59.99087 * 19 18 16 38 38 H 1.08000 * 120.00016 * 359.97438 * 21 20 19 39 39 H 1.07999 * 120.00082 * 180.25095 * 22 21 20 40 40 H 1.07995 * 119.99772 * 179.79141 * 23 22 21 41 41 H 1.07995 * 120.00204 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.00160 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2058 -3.6157 -0.0015 11 6 1.5055 -4.9070 -0.0020 12 1 0.5773 -4.8291 0.5640 13 6 1.2060 -5.3452 -1.4505 14 6 1.4052 -6.8811 -1.4316 15 6 2.6220 -7.0564 -0.4892 16 6 2.4058 -5.9951 0.6092 17 1 1.9147 -6.4445 1.4723 18 8 3.6595 -5.4310 0.9990 19 6 4.2689 -6.0839 2.1145 20 6 5.5781 -5.4109 2.4368 21 6 6.7463 -5.8512 1.8429 22 6 7.9466 -5.2310 2.1352 23 6 7.9803 -4.1766 3.0286 24 6 6.8129 -3.7394 3.6260 25 6 5.6119 -4.3568 3.3305 26 1 -0.4851 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8881 29 1 2.8412 -3.5482 -0.7823 30 1 0.1793 -5.0969 -1.7196 31 1 1.9065 -4.8781 -2.1428 32 1 1.6333 -7.2533 -2.4303 33 1 0.5267 -7.3824 -1.0254 34 1 3.5510 -6.8657 -1.0265 35 1 2.6286 -8.0570 -0.0570 36 1 3.6063 -6.0226 2.9778 37 1 4.4495 -7.1303 1.8688 38 1 6.7206 -6.6779 1.1484 39 1 8.8586 -5.5724 1.6682 40 1 8.9185 -3.6943 3.2594 41 1 6.8392 -2.9159 4.3243 42 1 4.6999 -4.0154 3.7976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411724703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:48 Heat of formation + Delta-G solvation = -26.103251 kcal Electronic energy + Delta-G solvation = -21113.619419 eV Core-core repulsion = 18058.013729 eV Total energy + Delta-G solvation = -3055.605690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.33669 -38.60041 -35.97043 -33.84113 -31.93017 -31.66999 -30.77394 -27.70508 -27.55224 -25.62196 -24.84157 -22.45761 -21.56921 -21.14927 -20.60181 -19.54580 -16.93364 -16.54971 -16.22285 -15.50488 -15.37491 -14.96259 -14.51932 -14.41989 -13.86886 -13.49431 -13.31946 -13.20581 -12.94273 -12.64114 -12.39019 -12.15461 -11.87017 -11.47349 -11.24660 -11.04499 -10.93454 -10.84539 -10.76781 -10.59582 -10.56682 -10.39290 -10.29975 -9.75676 -9.18455 -8.97580 -8.78397 -8.68710 -8.40042 -7.01493 -5.95682 -3.96298 1.40615 1.53714 3.38513 3.41522 3.45750 3.73884 4.34500 4.50200 4.83411 4.84047 4.94716 4.98367 5.09650 5.18720 5.25657 5.37203 5.40124 5.44077 5.52459 5.56274 5.68038 5.75534 5.80692 5.83944 5.86360 6.02563 6.08251 6.16509 6.17472 6.20130 6.33803 6.47302 6.55057 6.61656 6.61852 6.76069 7.10776 7.34006 7.54041 7.67268 7.91225 8.24555 8.57478 8.77977 9.14367 9.68190 11.15480 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.005947 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.088738 B = 4706.904168 C = 6876.236436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.662 5.662 11 C 0.086 3.914 12 H 0.077 0.923 13 C -0.151 4.151 14 C -0.120 4.120 15 C -0.147 4.147 16 C 0.093 3.907 17 H 0.056 0.944 18 O -0.335 6.335 19 C 0.100 3.900 20 C -0.079 4.079 21 C -0.102 4.102 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.090 4.090 26 H 0.260 0.740 27 H -0.016 1.016 28 H 0.024 0.976 29 H 0.332 0.668 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.927 -15.397 3.509 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.292 5.292 11 C -0.026 4.026 12 H 0.095 0.905 13 C -0.190 4.190 14 C -0.158 4.158 15 C -0.185 4.185 16 C 0.034 3.966 17 H 0.074 0.926 18 O -0.253 6.253 19 C 0.023 3.977 20 C -0.080 4.080 21 C -0.120 4.120 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.108 4.108 26 H 0.070 0.930 27 H 0.001 0.999 28 H 0.042 0.958 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.939 -15.072 4.121 18.518 hybrid contribution -0.116 0.731 -0.830 1.112 sum 9.823 -14.341 3.290 17.691 Atomic orbital electron populations 1.69953 1.06034 1.26695 1.51385 1.24970 0.94832 0.99222 0.95558 0.86583 0.79437 0.82861 0.78648 1.20326 1.21427 1.20210 1.21177 0.93529 0.90285 1.49672 0.92041 1.19575 0.90639 0.87662 0.95348 1.60467 1.19622 0.99770 1.49327 1.22253 0.95375 0.91283 0.93661 0.90504 1.23152 1.01825 0.95262 0.98793 1.22342 0.97626 0.96759 0.99058 1.22921 0.99370 0.98378 0.97862 1.22856 0.85320 0.93071 0.95332 0.92589 1.88242 1.33842 1.55883 1.47322 1.21287 0.91476 0.94515 0.90450 1.19619 0.94010 0.97126 0.97196 1.21004 0.92226 1.00049 0.98765 1.21069 0.97724 0.97006 0.98836 1.21134 0.98194 0.97117 0.97366 1.21152 0.92668 0.99866 1.00414 1.21134 0.98101 0.94384 0.97165 0.93015 0.99869 0.95804 0.85033 0.91728 0.91352 0.91924 0.91744 0.90686 0.92237 0.92999 0.93594 0.86336 0.86346 0.86390 0.86068 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.84 9.32 -34.44 -0.32 -15.16 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.22 5.27 -4.98 -0.03 5.19 16 10 N -0.66 -14.78 5.27 -106.81 -0.56 -15.35 16 11 C 0.09 1.56 3.23 -66.60 -0.22 1.34 16 12 H 0.08 1.45 7.81 -51.93 -0.41 1.04 16 13 C -0.15 -2.38 6.45 -25.07 -0.16 -2.54 16 14 C -0.12 -1.49 6.91 -24.74 -0.17 -1.66 16 15 C -0.15 -1.87 6.56 -25.07 -0.16 -2.03 16 16 C 0.09 1.43 3.38 -25.61 -0.09 1.34 16 17 H 0.06 0.78 7.80 -51.93 -0.41 0.38 16 18 O -0.34 -5.70 8.94 -35.23 -0.31 -6.01 16 19 C 0.10 1.38 5.90 36.00 0.21 1.59 16 20 C -0.08 -1.13 5.51 -104.62 -0.58 -1.71 16 21 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 22 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 24 C -0.12 -1.60 10.05 -39.58 -0.40 -1.99 16 25 C -0.09 -1.30 9.70 -39.58 -0.38 -1.68 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H -0.02 -0.46 8.14 -51.93 -0.42 -0.89 16 28 H 0.02 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.33 7.42 8.10 -39.29 -0.32 7.10 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.13 7.56 -51.93 -0.39 0.74 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 37 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 346.55 15.07 5.22 5.22 Total: -1.00 -31.63 346.55 -10.48 -42.11 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.97 Total: 4.63 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -3.57 Total: -21.22 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.17 Total: -42.04 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.31 Total: -6.01 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.63 -10.48 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411724703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.009 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds