Wall clock time and date at job start Mon Mar 30 2020 01:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99749 * 2 1 4 4 H 1.48497 * 109.47265 * 240.00079 * 3 2 1 5 5 H 1.48500 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47045 * 120.00107 * 3 2 1 7 7 C 1.37877 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99775 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47218 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00173 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.05660 * 326.41575 * 11 10 9 13 13 C 1.54267 * 110.03184 * 87.83000 * 11 10 9 14 14 C 1.54889 * 104.19385 * 142.89567 * 13 11 10 15 15 C 1.54892 * 102.74991 * 322.05789 * 14 13 11 16 16 C 1.53876 * 110.03476 * 204.99800 * 11 10 9 17 17 H 1.08999 * 110.02894 * 121.38001 * 16 11 10 18 18 O 1.42895 * 110.02782 * 0.02562 * 16 11 10 19 19 C 1.42902 * 114.00093 * 150.00248 * 18 16 11 20 20 C 1.50696 * 109.47502 * 179.97438 * 19 18 16 21 21 C 1.38239 * 119.99838 * 269.72314 * 20 19 18 22 22 C 1.38234 * 119.99897 * 179.78584 * 21 20 19 23 23 C 1.38245 * 120.00059 * 0.46674 * 22 21 20 24 24 C 1.38233 * 119.99814 * 359.76509 * 23 22 21 25 25 C 1.38236 * 120.00170 * 0.02562 * 24 23 22 26 26 H 0.96998 * 120.00558 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47391 * 59.99603 * 9 7 2 28 28 H 1.09004 * 109.47248 * 299.99729 * 9 7 2 29 29 H 1.00901 * 110.99754 * 303.95564 * 10 9 7 30 30 H 1.09005 * 110.48840 * 261.57260 * 13 11 10 31 31 H 1.09001 * 110.48280 * 24.22097 * 13 11 10 32 32 H 1.09004 * 110.75452 * 203.74370 * 14 13 11 33 33 H 1.09003 * 110.91416 * 80.44836 * 14 13 11 34 34 H 1.09000 * 110.48309 * 279.26358 * 15 14 13 35 35 H 1.09003 * 110.48387 * 156.62372 * 15 14 13 36 36 H 1.09007 * 109.46937 * 299.99683 * 19 18 16 37 37 H 1.08996 * 109.47357 * 59.99087 * 19 18 16 38 38 H 1.08000 * 120.00016 * 359.97438 * 21 20 19 39 39 H 1.07999 * 120.00082 * 180.25095 * 22 21 20 40 40 H 1.07995 * 119.99772 * 179.79141 * 23 22 21 41 41 H 1.07995 * 120.00204 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.00160 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2058 -3.6157 -0.0015 11 6 1.5055 -4.9070 -0.0020 12 1 0.5773 -4.8291 0.5640 13 6 1.2060 -5.3452 -1.4505 14 6 1.4052 -6.8811 -1.4316 15 6 2.6220 -7.0564 -0.4892 16 6 2.4058 -5.9951 0.6092 17 1 1.9147 -6.4445 1.4723 18 8 3.6595 -5.4310 0.9990 19 6 4.2689 -6.0839 2.1145 20 6 5.5781 -5.4109 2.4368 21 6 6.7463 -5.8512 1.8429 22 6 7.9466 -5.2310 2.1352 23 6 7.9803 -4.1766 3.0286 24 6 6.8129 -3.7394 3.6260 25 6 5.6119 -4.3568 3.3305 26 1 -0.4851 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8881 29 1 2.8412 -3.5482 -0.7823 30 1 0.1793 -5.0969 -1.7196 31 1 1.9065 -4.8781 -2.1428 32 1 1.6333 -7.2533 -2.4303 33 1 0.5267 -7.3824 -1.0254 34 1 3.5510 -6.8657 -1.0265 35 1 2.6286 -8.0570 -0.0570 36 1 3.6063 -6.0226 2.9778 37 1 4.4495 -7.1303 1.8688 38 1 6.7206 -6.6779 1.1484 39 1 8.8586 -5.5724 1.6682 40 1 8.9185 -3.6943 3.2594 41 1 6.8392 -2.9159 4.3243 42 1 4.6999 -4.0154 3.7976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411724703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:47 Heat of formation + Delta-G solvation = -44.509889 kcal Electronic energy + Delta-G solvation = -21114.417591 eV Core-core repulsion = 18058.013729 eV Total energy + Delta-G solvation = -3056.403862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44289 -39.75281 -37.29484 -35.68513 -33.92469 -32.68161 -31.73485 -29.48139 -28.72449 -26.97974 -26.37405 -23.64445 -23.42529 -22.16495 -21.73231 -20.91887 -18.60364 -17.97886 -17.42983 -16.99745 -16.55058 -16.39033 -15.96499 -15.61539 -15.25786 -14.94678 -14.53710 -14.43344 -14.26575 -14.18230 -13.68346 -13.47933 -13.35275 -13.04222 -12.83567 -12.68660 -12.45430 -12.26767 -11.96160 -11.91331 -11.79081 -11.76638 -11.63925 -11.50669 -11.18720 -10.65538 -10.23642 -9.76541 -9.68127 -8.85943 -8.21832 -6.32321 0.41868 0.55494 1.38251 1.42210 1.50296 2.39410 2.69879 3.10609 3.23749 3.60507 3.67820 3.78818 3.98189 4.03524 4.17905 4.21022 4.31028 4.34206 4.41511 4.48958 4.52804 4.59416 4.68788 4.73361 4.82094 4.85381 5.01347 5.05922 5.12712 5.14055 5.16134 5.20345 5.25189 5.34147 5.41504 5.59857 5.63097 5.65112 5.75628 6.05021 6.15874 6.44931 6.60199 6.83457 6.95937 7.38430 8.89366 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.005947 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.088738 B = 4706.904168 C = 6876.236436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.213 3.787 10 N -0.662 5.662 11 C 0.075 3.925 12 H 0.060 0.940 13 C -0.149 4.149 14 C -0.108 4.108 15 C -0.136 4.136 16 C 0.095 3.905 17 H 0.069 0.931 18 O -0.365 6.365 19 C 0.099 3.901 20 C -0.100 4.100 21 C -0.110 4.110 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.136 4.136 25 C -0.118 4.118 26 H 0.265 0.735 27 H -0.041 1.041 28 H -0.007 1.007 29 H 0.331 0.669 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.910 -16.514 3.060 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.086 3.914 10 N -0.292 5.292 11 C -0.036 4.036 12 H 0.078 0.922 13 C -0.188 4.188 14 C -0.146 4.146 15 C -0.174 4.174 16 C 0.036 3.964 17 H 0.087 0.913 18 O -0.284 6.284 19 C 0.023 3.977 20 C -0.100 4.100 21 C -0.128 4.128 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.154 4.154 25 C -0.136 4.136 26 H 0.074 0.926 27 H -0.023 1.023 28 H 0.011 0.989 29 H 0.149 0.851 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.926 -16.221 3.674 20.466 hybrid contribution -0.736 1.056 -0.656 1.445 sum 11.189 -15.166 3.018 19.087 Atomic orbital electron populations 1.70078 1.07683 1.27951 1.51710 1.25908 0.95773 1.03175 0.94664 0.85445 0.78205 0.77926 0.79082 1.19188 1.20437 1.19541 1.21490 0.93523 0.91671 1.50342 0.92428 1.19176 0.90542 0.89101 0.92621 1.60357 1.18984 1.00451 1.49365 1.22451 0.95388 0.90242 0.95558 0.92187 1.23046 1.00909 0.98328 0.96566 1.22326 0.98327 0.93569 1.00386 1.22849 0.99075 0.98738 0.96689 1.22860 0.84585 0.92341 0.96617 0.91320 1.88186 1.34334 1.57398 1.48456 1.21408 0.91215 0.95611 0.89493 1.19802 0.94840 0.97559 0.97773 1.21285 0.92078 1.00617 0.98808 1.21473 0.98492 0.96443 0.98296 1.21504 0.98757 0.97054 0.96770 1.21402 0.92735 1.00271 1.00946 1.21243 0.98430 0.95555 0.98354 0.92647 1.02326 0.98882 0.85139 0.92634 0.92435 0.89950 0.90107 0.91097 0.89172 0.93242 0.90974 0.84559 0.83453 0.83723 0.84896 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.97 46.09 29.54 68.60 2.03 48.11 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.53 -32.02 9.32 25.60 0.24 -31.78 16 8 H 0.06 3.44 7.81 -2.92 -0.02 3.41 16 9 C 0.21 12.07 5.27 85.56 0.45 12.52 16 10 N -0.66 -30.81 5.27 -491.84 -2.59 -33.40 16 11 C 0.07 2.78 3.23 45.64 0.15 2.92 16 12 H 0.06 2.38 7.81 -2.39 -0.02 2.36 16 13 C -0.15 -4.72 6.45 31.67 0.20 -4.51 16 14 C -0.11 -2.43 6.91 31.89 0.22 -2.21 16 15 C -0.14 -3.07 6.56 31.67 0.21 -2.86 16 16 C 0.09 2.82 3.38 31.32 0.11 2.93 16 17 H 0.07 1.84 7.80 -2.39 -0.02 1.82 16 18 O -0.37 -12.33 8.94 -148.98 -1.33 -13.66 16 19 C 0.10 2.68 5.90 71.23 0.42 3.10 16 20 C -0.10 -2.81 5.51 -19.86 -0.11 -2.92 16 21 C -0.11 -2.63 9.70 22.27 0.22 -2.41 16 22 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 23 C -0.12 -2.69 10.05 22.27 0.22 -2.46 16 24 C -0.14 -3.47 10.05 22.27 0.22 -3.25 16 25 C -0.12 -3.48 9.70 22.27 0.22 -3.26 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H -0.04 -2.45 8.14 -2.39 -0.02 -2.47 16 28 H -0.01 -0.43 8.07 -2.38 -0.02 -0.45 16 29 H 0.33 15.34 8.10 -89.69 -0.73 14.62 16 30 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.06 1.93 7.56 -2.39 -0.02 1.91 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.32 8.04 -2.38 -0.02 1.30 16 37 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 42 H 0.11 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -70.09 346.55 2.09 -67.99 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.25 Total: 24.87 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 3.45 Total: -36.07 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -2.31 Total: -91.25 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.33 Total: -13.66 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -70.09 2.09 -67.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411724703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.482 kcal (2) G-P(sol) polarization free energy of solvation -70.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds