Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.52998 * 109.47490 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47794 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47535 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99684 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00024 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46962 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99785 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99914 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00074 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46996 * 90.00193 * 18 16 14 20 20 H 1.48494 * 109.47356 * 209.99937 * 18 16 14 21 21 H 1.48498 * 109.47167 * 330.00145 * 18 16 14 22 22 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 5 4 24 24 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 25 25 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 26 26 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 27 27 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 30 30 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 31 31 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 32 32 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 33 33 H 1.08999 * 109.47245 * 300.00709 * 8 7 6 34 34 H 1.09006 * 109.46881 * 59.99852 * 8 7 6 35 35 H 1.09000 * 109.46697 * 299.99938 * 9 8 7 36 36 H 1.08993 * 109.47016 * 59.99991 * 9 8 7 37 37 H 0.97001 * 120.00111 * 359.97438 * 12 10 9 38 38 H 1.09000 * 109.47064 * 299.99526 * 13 12 10 39 39 H 1.09001 * 109.47287 * 60.00136 * 13 12 10 40 40 H 0.97001 * 119.99867 * 179.97438 * 17 16 14 41 41 H 1.07999 * 119.99934 * 180.25938 * 22 5 4 42 42 H 1.08001 * 120.00294 * 179.76453 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8241 -0.0021 1.4247 9 6 8.3397 -0.0055 2.8652 10 6 9.8466 -0.0042 2.8595 11 8 10.4491 -0.0015 1.8068 12 7 10.5249 -0.0072 4.0241 13 6 11.9899 -0.0066 4.0185 14 6 12.4977 -0.0098 5.4374 15 1 11.7990 -0.0124 6.2609 16 6 13.8541 -0.0103 5.6842 17 7 14.7050 -0.0076 4.6813 18 14 14.4835 -0.0150 7.4429 19 1 14.6505 -1.4163 7.9052 20 1 15.7918 0.6850 7.5024 21 1 13.5086 0.6826 8.3194 22 6 3.5805 -1.1972 0.0010 23 6 2.1982 -1.1972 0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 0.0001 29 1 6.1400 -0.8891 -0.5270 30 1 6.1401 0.8909 -0.5236 31 1 5.9328 0.8863 1.9473 32 1 5.9327 -0.8937 1.9440 33 1 8.1859 -0.8908 0.9076 34 1 8.1851 0.8891 0.9112 35 1 7.9779 0.8831 3.3825 36 1 7.9787 -0.8968 3.3782 37 1 10.0431 -0.0098 4.8659 38 1 12.3517 -0.8950 3.5008 39 1 12.3510 0.8850 3.5058 40 1 15.6593 -0.0076 4.8550 41 1 4.1205 -2.1325 0.0013 42 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427617681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = -56.117597 kcal Electronic energy + Delta-G solvation = -19401.612551 eV Core-core repulsion = 16344.705341 eV Total energy + Delta-G solvation = -3056.907210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.72090 -38.82019 -35.83940 -34.16263 -33.21063 -32.29060 -31.13474 -30.25740 -27.69652 -26.45259 -24.03434 -22.93366 -22.40904 -21.12298 -20.69497 -19.51282 -17.00395 -16.28666 -16.06969 -15.57177 -15.35837 -15.31843 -15.07765 -14.24903 -14.15327 -14.07212 -13.62709 -13.40581 -13.15993 -12.88771 -12.63687 -12.44946 -12.09003 -11.96414 -11.70867 -11.65622 -11.30736 -11.11296 -11.01031 -10.97657 -10.86171 -10.81726 -10.48724 -10.30286 -9.38334 -9.13707 -8.99083 -8.72193 -8.65339 -7.84533 -6.15708 -4.22605 1.11496 1.19065 3.24564 3.30583 3.33145 3.44389 3.51577 4.12924 4.37768 4.55531 4.55598 4.72671 4.80347 4.87280 5.01239 5.08598 5.20199 5.24201 5.25127 5.31892 5.36344 5.46782 5.49266 5.55822 5.63995 5.74796 5.81343 5.90659 5.90745 5.99551 6.06890 6.21861 6.30963 6.36208 6.48666 6.49360 6.81155 7.33313 7.48115 7.53881 7.68680 7.98740 8.66937 8.80135 9.15484 9.44307 10.94527 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.049003 B = 0.002108 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.258524 B =13277.360093 C =13517.625582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.081 4.081 6 C -0.083 4.083 7 C -0.112 4.112 8 C -0.103 4.103 9 C -0.141 4.141 10 C 0.495 3.505 11 O -0.560 6.560 12 N -0.715 5.715 13 C 0.248 3.752 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.114 4.114 23 C -0.119 4.119 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.390 0.610 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.122 0.878 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.077 0.010 -7.818 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.132 4.132 5 C -0.081 4.081 6 C -0.120 4.120 7 C -0.150 4.150 8 C -0.141 4.141 9 C -0.181 4.181 10 C 0.280 3.720 11 O -0.439 6.439 12 N -0.363 5.363 13 C 0.127 3.873 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.132 4.132 23 C -0.138 4.138 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.223 0.777 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.404 0.017 -8.603 27.770 hybrid contribution 0.257 -0.013 1.411 1.434 sum -26.147 0.003 -7.192 27.118 Atomic orbital electron populations 1.20777 0.91404 1.02663 1.02166 1.19907 0.95972 0.93314 1.00530 1.21017 0.94229 0.97432 1.01072 1.21073 0.94073 0.97774 1.00324 1.19983 0.96007 0.93083 0.99037 1.20648 0.90218 1.03265 0.97889 1.21597 0.95567 1.02237 0.95564 1.21322 0.93573 1.03635 0.95523 1.21677 0.93587 1.03647 0.99236 1.20582 0.89590 0.77275 0.84537 1.90648 1.70871 1.51112 1.31298 1.46496 1.10306 1.72461 1.07083 1.19093 0.73196 0.97659 0.97309 1.21244 0.92186 1.53128 0.91605 0.91911 1.24963 0.96628 0.94731 0.97771 1.69980 1.02564 1.48954 1.30811 0.86408 0.78324 0.78206 0.83923 1.20471 1.21000 1.19762 1.21073 0.94072 0.97774 1.00323 1.21019 0.94229 0.97432 1.01071 0.91353 0.91657 0.91658 0.86281 0.86038 0.90826 0.90828 0.91902 0.91897 0.91238 0.91231 0.89617 0.89609 0.77744 0.95622 0.95615 0.92467 0.86038 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.10 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16 4 C -0.11 -1.05 9.70 -39.58 -0.38 -1.44 16 5 C -0.08 -0.78 5.13 -104.63 -0.54 -1.32 16 6 C -0.08 -0.78 5.34 -27.89 -0.15 -0.93 16 7 C -0.11 -1.12 5.20 -26.73 -0.14 -1.26 16 8 C -0.10 -1.32 4.50 -26.73 -0.12 -1.44 16 9 C -0.14 -1.95 5.70 -27.88 -0.16 -2.11 16 10 C 0.50 9.95 7.83 -10.99 -0.09 9.86 16 11 O -0.56 -13.62 15.98 5.55 0.09 -13.53 16 12 N -0.72 -15.31 5.55 -61.47 -0.34 -15.65 16 13 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 14 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 18 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C -0.11 -1.05 9.70 -39.58 -0.38 -1.44 16 23 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 26 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.39 7.12 8.32 -40.82 -0.34 6.78 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -32.72 356.24 -9.64 -42.36 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.04 Total: 2.66 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -3.43 Total: -11.56 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.40 Total: -41.27 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.72 -9.64 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427617681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.761 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds