Wall clock time and date at job start Mon Mar 30 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99967 * 2 1 4 4 N 1.46899 * 109.47881 * 124.15625 * 3 2 1 5 5 C 1.46898 * 110.99629 * 301.54316 * 4 3 2 6 6 C 1.50700 * 109.47156 * 288.93344 * 5 4 3 7 7 H 1.08006 * 119.99642 * 354.87282 * 6 5 4 8 8 C 1.37878 * 120.00320 * 174.87296 * 6 5 4 9 9 N 1.31511 * 119.99801 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47126 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46971 * 119.99566 * 10 8 6 13 13 H 1.48494 * 109.46952 * 239.99595 * 10 8 6 14 14 C 1.46905 * 110.99622 * 65.49050 * 4 3 2 15 15 C 1.50697 * 109.47057 * 66.05258 * 14 4 3 16 16 C 1.38174 * 120.02503 * 259.72048 * 15 14 4 17 17 C 1.38246 * 120.05000 * 179.76816 * 16 15 14 18 18 C 1.50698 * 119.94039 * 180.25507 * 17 16 15 19 19 C 1.38291 * 120.11387 * 0.50941 * 17 16 15 20 20 C 1.38121 * 120.05658 * 359.74304 * 19 17 16 21 21 C 1.38705 * 120.03077 * 79.99470 * 15 14 4 22 22 O 1.35909 * 120.05718 * 0.02562 * 21 15 14 23 23 C 1.42897 * 117.00015 * 179.97438 * 22 21 15 24 24 H 1.07997 * 120.00083 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99941 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99884 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47094 * 4.15273 * 3 2 1 28 28 H 1.09005 * 109.46739 * 244.15948 * 3 2 1 29 29 H 1.08998 * 109.47906 * 48.93654 * 5 4 3 30 30 H 1.09006 * 109.47084 * 168.93787 * 5 4 3 31 31 H 0.96997 * 120.00206 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.46630 * 186.04693 * 14 4 3 33 33 H 1.08997 * 109.46940 * 306.04803 * 14 4 3 34 34 H 1.07993 * 119.97009 * 0.02562 * 16 15 14 35 35 H 1.09004 * 109.47269 * 270.25433 * 18 17 16 36 36 H 1.09003 * 109.47356 * 30.25399 * 18 17 16 37 37 H 1.08994 * 109.47390 * 150.25755 * 18 17 16 38 38 H 1.07997 * 119.96929 * 179.72513 * 19 17 16 39 39 H 1.07995 * 120.02844 * 179.97438 * 20 19 17 40 40 H 1.09004 * 109.46897 * 60.00375 * 23 22 21 41 41 H 1.09002 * 109.46922 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47526 * 299.99857 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9818 1.3405 1.1460 5 6 2.2513 1.1839 2.4109 6 6 1.4552 2.4328 2.6892 7 1 1.5523 3.2908 2.0404 8 6 0.6029 2.4801 3.7719 9 7 0.4843 1.4352 4.5615 10 14 -0.3844 4.0280 4.1164 11 1 -0.0734 5.0527 3.0876 12 1 -1.8343 3.7095 4.0761 13 1 -0.0300 4.5524 5.4597 14 6 4.0292 0.3191 1.0130 15 6 4.9104 0.6534 -0.1629 16 6 4.7296 0.0041 -1.3690 17 6 5.5345 0.3138 -2.4495 18 6 5.3314 -0.3918 -3.7655 19 6 6.5293 1.2662 -2.3232 20 6 6.7174 1.9143 -1.1181 21 6 5.9074 1.6091 -0.0337 22 8 6.0913 2.2448 1.1534 23 6 7.1370 3.2167 1.2137 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3575 2.1322 0.0744 28 1 2.6331 1.3957 -0.9250 29 1 1.5761 0.3314 2.3374 30 1 2.9605 1.0169 3.2217 31 1 -0.1155 1.4683 5.3231 32 1 4.6302 0.2946 1.9220 33 1 3.5680 -0.6559 0.8559 34 1 3.9561 -0.7429 -1.4690 35 1 5.9449 -1.2923 -3.7935 36 1 4.2814 -0.6640 -3.8735 37 1 5.6208 0.2705 -4.5813 38 1 7.1596 1.5031 -3.1675 39 1 7.4947 2.6577 -1.0198 40 1 6.9428 4.0050 0.4864 41 1 7.1760 3.6468 2.2145 42 1 8.0902 2.7394 0.9864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428882637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:37 Heat of formation + Delta-G solvation = -8.856277 kcal Electronic energy + Delta-G solvation = -21617.838204 eV Core-core repulsion = 18562.980399 eV Total energy + Delta-G solvation = -3054.857806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22469 -39.03926 -38.27715 -34.84802 -34.20136 -32.76503 -32.18450 -29.13617 -28.61696 -27.69066 -26.61373 -25.57925 -22.95952 -22.71174 -21.53194 -20.18994 -18.78488 -18.31349 -17.39417 -16.93042 -16.54724 -16.07631 -16.02573 -15.91850 -15.35847 -15.13221 -14.70292 -14.56779 -14.36326 -14.05208 -13.79394 -13.25427 -13.16578 -12.90448 -12.85828 -12.73076 -12.56948 -12.51522 -12.23548 -12.21214 -12.10268 -11.93856 -11.62311 -11.59886 -11.17772 -10.58078 -10.19105 -9.73823 -8.89281 -8.80025 -8.14553 -6.23597 0.43255 0.57352 1.39698 1.40506 1.47051 1.54029 2.42298 2.57597 2.81691 3.17259 3.57376 3.85526 3.92653 4.08974 4.10797 4.27901 4.29675 4.39232 4.44241 4.50622 4.52766 4.64441 4.67794 4.75119 4.83045 4.87399 4.94490 4.97865 5.10319 5.18381 5.24266 5.27642 5.35551 5.46923 5.57263 5.69260 5.73466 5.75240 5.92956 6.01222 6.14357 6.44987 6.63269 6.71305 6.92474 7.45037 8.95751 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.005439 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.147934 B = 5146.567075 C = 6148.808114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.186 4.186 3 C 0.097 3.903 4 N -0.526 5.526 5 C 0.210 3.790 6 C -0.510 4.510 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.107 3.893 15 C -0.119 4.119 16 C -0.084 4.084 17 C -0.131 4.131 18 C -0.104 4.104 19 C -0.084 4.084 20 C -0.210 4.210 21 C 0.122 3.878 22 O -0.333 6.333 23 C 0.022 3.978 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.057 0.943 28 H 0.079 0.921 29 H -0.017 1.017 30 H -0.011 1.011 31 H 0.262 0.738 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.300 -1.526 -15.747 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C -0.030 4.030 4 N -0.248 5.248 5 C 0.085 3.915 6 C -0.549 4.549 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.191 1.191 12 H -0.203 1.203 13 H -0.205 1.205 14 C -0.021 4.021 15 C -0.120 4.120 16 C -0.102 4.102 17 C -0.131 4.131 18 C -0.160 4.160 19 C -0.102 4.102 20 C -0.229 4.229 21 C 0.076 3.924 22 O -0.246 6.246 23 C -0.072 4.072 24 H 0.106 0.894 25 H 0.124 0.876 26 H 0.125 0.875 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.001 0.999 30 H 0.007 0.993 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.147 0.853 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.362 -1.119 -15.380 19.764 hybrid contribution -0.906 -0.068 0.940 1.307 sum 11.455 -1.187 -14.440 18.471 Atomic orbital electron populations 1.23832 0.96015 1.01728 1.00116 1.23519 0.96919 0.99553 1.00589 1.21132 0.94098 0.94178 0.93639 1.62285 1.12902 1.46893 1.02765 1.19356 0.90993 0.95458 0.85741 1.21381 1.23038 0.99732 1.10730 0.92791 1.25796 0.98076 0.99490 0.95853 1.70090 1.39078 1.31324 1.16952 0.85438 0.78231 0.79511 0.78067 1.19067 1.20314 1.20501 1.20709 0.92466 0.93057 0.95874 1.19219 0.97353 0.99123 0.96309 1.20900 0.99221 0.99056 0.91032 1.20083 0.97080 0.99289 0.96640 1.20726 1.02628 1.00231 0.92434 1.21124 0.97188 0.94811 0.97091 1.21443 1.02833 1.05164 0.93425 1.19079 0.94886 0.92757 0.85637 1.86210 1.54146 1.53163 1.31123 1.23235 0.89090 0.90538 1.04373 0.89403 0.87562 0.87508 0.92415 0.90287 0.99896 0.99313 0.92891 0.92762 0.94634 0.85338 0.90500 0.91583 0.90300 0.83064 0.83552 0.92021 0.87901 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.52 14.32 67.78 0.97 -5.55 16 2 C -0.19 -7.03 7.39 25.64 0.19 -6.84 16 3 C 0.10 4.00 5.44 85.56 0.47 4.47 16 4 N -0.53 -24.40 4.66 -909.94 -4.24 -28.64 16 5 C 0.21 11.73 4.57 85.56 0.39 12.12 16 6 C -0.51 -30.05 8.53 25.60 0.22 -29.83 16 7 H 0.05 3.19 7.61 -2.91 -0.02 3.17 16 8 C 0.01 0.32 5.46 84.66 0.46 0.78 16 9 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 10 Si 0.96 45.68 29.54 68.60 2.03 47.70 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 C 0.11 4.30 4.61 85.55 0.39 4.70 16 15 C -0.12 -4.05 4.59 -19.77 -0.09 -4.14 16 16 C -0.08 -2.34 8.25 22.26 0.18 -2.15 16 17 C -0.13 -2.97 5.88 -19.85 -0.12 -3.09 16 18 C -0.10 -1.63 10.01 71.24 0.71 -0.92 16 19 C -0.08 -1.80 9.69 22.25 0.22 -1.58 16 20 C -0.21 -5.23 9.04 22.37 0.20 -5.03 16 21 C 0.12 3.99 6.66 22.51 0.15 4.14 16 22 O -0.33 -11.67 9.73 -92.52 -0.90 -12.57 16 23 C 0.02 0.52 9.81 113.37 1.11 1.63 16 24 H 0.09 3.33 7.84 -2.91 -0.02 3.31 16 25 H 0.11 3.36 8.06 -2.91 -0.02 3.34 16 26 H 0.11 3.73 6.84 -2.91 -0.02 3.71 16 27 H 0.06 2.61 7.01 -2.39 -0.02 2.59 16 28 H 0.08 2.94 6.35 -2.38 -0.02 2.92 16 29 H -0.02 -0.98 6.68 -2.39 -0.02 -1.00 16 30 H -0.01 -0.69 7.83 -2.38 -0.02 -0.71 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.05 2.38 7.58 -2.39 -0.02 2.36 16 33 H 0.04 1.37 6.27 -2.39 -0.01 1.35 16 34 H 0.13 3.33 8.03 -2.91 -0.02 3.31 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 37 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 38 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.15 2.84 6.30 -2.91 -0.02 2.82 16 40 H 0.06 1.28 7.66 -2.38 -0.02 1.27 16 41 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 Total: -1.00 -69.95 343.32 3.62 -66.33 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.98 Total: 15.65 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 5.46 Total: -31.31 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -3.95 Total: -85.80 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.90 Total: -12.57 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -69.95 3.62 -66.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428882637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.477 kcal (2) G-P(sol) polarization free energy of solvation -69.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds