Wall clock time and date at job start Mon Mar 30 2020 02:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35907 * 117.00232 * 2 1 4 4 C 1.38748 * 120.05250 * 359.73087 * 3 2 1 5 5 C 1.38130 * 119.94168 * 179.69930 * 4 3 2 6 6 C 1.38284 * 120.05349 * 0.59375 * 5 4 3 7 7 C 1.50697 * 119.94537 * 179.69963 * 6 5 4 8 8 C 1.38242 * 120.11334 * 359.67968 * 6 5 4 9 9 C 1.38162 * 120.05691 * 0.02562 * 8 6 5 10 10 C 1.50702 * 120.03215 * 179.97438 * 9 8 6 11 11 N 1.46895 * 109.47402 * 260.02144 * 10 9 8 12 12 C 1.46897 * 111.00302 * 179.97438 * 11 10 9 13 13 C 1.52990 * 109.47639 * 185.35130 * 12 11 10 14 14 C 1.50706 * 115.54925 * 65.05127 * 13 12 11 15 15 H 1.08005 * 119.99992 * 265.44638 * 14 13 12 16 16 C 1.37875 * 119.99733 * 85.44443 * 14 13 12 17 17 N 1.31510 * 120.00503 * 353.60265 * 16 14 13 18 18 Si 1.86805 * 119.99625 * 173.60061 * 16 14 13 19 19 H 1.48499 * 109.47201 * 60.00192 * 18 16 14 20 20 H 1.48503 * 109.46848 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47139 * 300.00148 * 18 16 14 22 22 C 1.53001 * 117.50254 * 279.38552 * 13 12 11 23 23 C 1.53003 * 117.50174 * 210.72075 * 13 12 11 24 24 H 1.09007 * 109.46419 * 300.00009 * 1 2 3 25 25 H 1.08995 * 109.47441 * 59.99433 * 1 2 3 26 26 H 1.08998 * 109.47335 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.03123 * 359.97073 * 4 3 2 28 28 H 1.08001 * 119.97182 * 180.29157 * 5 4 3 29 29 H 1.09003 * 109.47262 * 269.98151 * 7 6 5 30 30 H 1.09002 * 109.46871 * 29.97773 * 7 6 5 31 31 H 1.09003 * 109.47744 * 149.97731 * 7 6 5 32 32 H 1.08000 * 119.97125 * 180.02562 * 8 6 5 33 33 H 1.09006 * 109.46599 * 20.02535 * 10 9 8 34 34 H 1.09002 * 109.47123 * 140.02059 * 10 9 8 35 35 H 1.00897 * 111.00388 * 303.95225 * 11 10 9 36 36 H 1.09000 * 109.47102 * 305.35547 * 12 11 10 37 37 H 1.09008 * 109.46785 * 65.34700 * 12 11 10 38 38 H 0.97002 * 120.00382 * 179.97438 * 17 16 14 39 39 H 1.09004 * 117.49420 * 359.97438 * 22 13 12 40 40 H 1.08997 * 117.50366 * 145.01648 * 22 13 12 41 41 H 1.09000 * 117.49877 * 214.97591 * 23 13 12 42 42 H 1.08994 * 117.49898 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0056 5 6 1.9209 3.6048 0.0007 6 6 3.3020 3.6758 0.0002 7 6 3.9862 5.0184 0.0002 8 6 4.0560 2.5171 0.0001 9 6 3.4312 1.2848 -0.0001 10 6 4.2538 0.0221 -0.0008 11 7 4.3195 -0.5188 -1.3649 12 6 5.1158 -1.7526 -1.4043 13 6 5.2732 -2.2120 -2.8551 14 6 6.0621 -1.2886 -3.7473 15 1 5.5505 -0.5541 -4.3517 16 6 7.4370 -1.3814 -3.7920 17 7 8.0690 -2.1864 -2.9662 18 14 8.4022 -0.3637 -5.0259 19 1 8.1477 1.0792 -4.7842 20 1 9.8524 -0.6437 -4.8718 21 1 7.9736 -0.7181 -6.4028 22 6 4.1070 -2.9767 -3.4846 23 6 5.3945 -3.7156 -3.1108 24 1 -0.3632 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.2129 2.3204 -0.0105 28 1 1.3341 4.5114 0.0010 29 1 4.1511 5.3423 -1.0275 30 1 3.3582 5.7462 0.5141 31 1 4.9442 4.9382 0.5140 32 1 5.1344 2.5752 0.0001 33 1 5.2612 0.2447 0.3509 34 1 3.7925 -0.7124 0.6595 35 1 3.3947 -0.6730 -1.7378 36 1 6.0994 -1.5641 -0.9741 37 1 4.6108 -2.5294 -0.8299 38 1 9.0363 -2.2520 -2.9979 39 1 3.2277 -3.1528 -2.8648 40 1 3.9106 -2.8121 -4.5440 41 1 6.0445 -4.0369 -3.9247 42 1 5.3625 -4.3775 -2.2455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430061894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:28 Heat of formation + Delta-G solvation = 6.364893 kcal Electronic energy + Delta-G solvation = -21194.146091 eV Core-core repulsion = 18139.948324 eV Total energy + Delta-G solvation = -3054.197766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18455 -37.60079 -36.90316 -34.60342 -31.86522 -31.70351 -30.95614 -27.85954 -26.49956 -25.75482 -25.13350 -23.02661 -21.82099 -20.96528 -20.28712 -18.87827 -17.88327 -16.37457 -16.08837 -15.69846 -15.08652 -14.54411 -14.29258 -14.20509 -13.93483 -13.84880 -13.48048 -13.41264 -13.19610 -12.61907 -12.21017 -12.10004 -11.86990 -11.60736 -11.52016 -11.19159 -11.05482 -10.83990 -10.79962 -10.58122 -10.54918 -10.36272 -10.07522 -9.36648 -8.76695 -8.66759 -8.27698 -7.99461 -7.85642 -7.35705 -5.86867 -3.87641 1.46963 1.54086 3.35647 3.41827 3.45105 3.49183 3.83288 4.55127 4.79451 4.89419 4.97309 5.02496 5.10525 5.21945 5.32977 5.40986 5.43262 5.44537 5.59226 5.61538 5.66973 5.78658 5.86556 5.97506 6.09334 6.27779 6.28848 6.39466 6.47312 6.57890 6.62237 6.74161 6.78840 6.83552 6.95633 6.99480 7.20853 7.48679 7.56586 7.69684 8.05928 8.09090 8.32566 8.66730 9.10953 9.74715 11.23174 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.005244 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.452281 B = 5338.231200 C = 6567.780367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.124 3.876 4 C -0.207 4.207 5 C -0.090 4.090 6 C -0.126 4.126 7 C -0.107 4.107 8 C -0.063 4.063 9 C -0.093 4.093 10 C 0.106 3.894 11 N -0.661 5.661 12 C 0.108 3.892 13 C 0.053 3.947 14 C -0.467 4.467 15 H 0.058 0.942 16 C 0.067 3.933 17 N -0.887 5.887 18 Si 0.887 3.113 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.279 1.279 22 C -0.216 4.216 23 C -0.158 4.158 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.332 0.668 36 H 0.075 0.925 37 H -0.007 1.007 38 H 0.257 0.743 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 8.960 8.500 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.079 3.921 4 C -0.226 4.226 5 C -0.108 4.108 6 C -0.126 4.126 7 C -0.164 4.164 8 C -0.082 4.082 9 C -0.094 4.094 10 C -0.023 4.023 11 N -0.291 5.291 12 C -0.020 4.020 13 C 0.052 3.948 14 C -0.505 4.505 15 H 0.076 0.924 16 C -0.134 4.134 17 N -0.525 5.525 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.253 4.253 23 C -0.197 4.197 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.150 0.850 36 H 0.094 0.906 37 H 0.011 0.989 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.234 9.091 8.373 17.390 hybrid contribution -0.356 -0.041 -0.266 0.446 sum -12.589 9.050 8.107 17.496 Atomic orbital electron populations 1.23003 0.78907 1.03701 1.00977 1.86105 1.20882 1.26940 1.88729 1.18880 0.91862 0.84078 0.97298 1.21103 0.99558 0.92375 1.09559 1.20706 0.93914 0.96707 0.99462 1.19788 0.93572 0.95478 1.03753 1.20697 1.00145 0.93398 1.02162 1.20824 0.99998 0.90315 0.97023 1.19313 0.90171 0.96258 1.03645 1.20692 0.98012 0.91788 0.91842 1.60356 1.18963 1.32108 1.17671 1.21537 0.96429 0.87076 0.96980 1.18817 0.94151 0.90255 0.91532 1.20272 0.90326 1.16952 1.22940 0.92388 1.24923 0.97621 0.95362 0.95532 1.70001 1.08042 1.38160 1.36314 0.86746 0.78733 0.80924 0.82055 1.20280 1.21573 1.20520 1.22981 0.91859 1.10417 1.00042 1.22511 0.98465 0.97335 1.01348 0.93071 0.92748 0.88469 0.85882 0.86317 0.91423 0.92111 0.91681 0.85168 0.90690 0.95248 0.85048 0.90641 0.98854 0.93352 0.92221 0.90629 0.90128 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.54 9.68 -19.45 -0.19 -4.73 16 3 C 0.12 1.86 6.66 -39.22 -0.26 1.60 16 4 C -0.21 -2.64 9.04 -39.43 -0.36 -2.99 16 5 C -0.09 -1.09 9.69 -39.60 -0.38 -1.47 16 6 C -0.13 -1.63 5.88 -104.60 -0.62 -2.25 16 7 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 8 C -0.06 -0.95 9.32 -39.61 -0.37 -1.31 16 9 C -0.09 -1.51 5.41 -104.47 -0.56 -2.08 16 10 C 0.11 1.91 5.47 -4.98 -0.03 1.88 16 11 N -0.66 -13.94 6.36 -115.06 -0.73 -14.67 16 12 C 0.11 2.53 5.51 -3.83 -0.02 2.51 16 13 C 0.05 1.35 1.55 -155.66 -0.24 1.11 16 14 C -0.47 -13.09 8.74 -34.44 -0.30 -13.39 16 15 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 16 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 17 N -0.89 -25.68 12.92 55.43 0.72 -24.96 16 18 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 C -0.22 -4.89 9.96 -26.69 -0.27 -5.15 16 23 C -0.16 -3.85 9.41 -26.69 -0.25 -4.10 16 24 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 25 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.13 1.88 8.04 -52.49 -0.42 1.46 16 33 H 0.07 1.35 8.00 -51.93 -0.42 0.93 16 34 H 0.03 0.52 7.85 -51.93 -0.41 0.12 16 35 H 0.33 6.90 8.73 -39.29 -0.34 6.56 16 36 H 0.08 1.94 8.13 -51.93 -0.42 1.52 16 37 H -0.01 -0.15 8.09 -51.92 -0.42 -0.57 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -30.41 351.34 -9.23 -39.64 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.90 Total: 5.91 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.40 Total: -23.32 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.02 Total: -39.63 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.19 Total: -4.73 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.41 -9.23 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430061894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.005 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds