Wall clock time and date at job start Mon Mar 30 2020 02:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35907 * 117.00232 * 2 1 4 4 C 1.38748 * 120.05250 * 359.73087 * 3 2 1 5 5 C 1.38130 * 119.94168 * 179.69930 * 4 3 2 6 6 C 1.38284 * 120.05349 * 0.59375 * 5 4 3 7 7 C 1.50697 * 119.94537 * 179.69963 * 6 5 4 8 8 C 1.38242 * 120.11334 * 359.67968 * 6 5 4 9 9 C 1.38162 * 120.05691 * 0.02562 * 8 6 5 10 10 C 1.50702 * 120.03215 * 179.97438 * 9 8 6 11 11 N 1.46895 * 109.47402 * 260.02144 * 10 9 8 12 12 C 1.46897 * 111.00302 * 179.97438 * 11 10 9 13 13 C 1.52990 * 109.47639 * 185.35130 * 12 11 10 14 14 C 1.50706 * 115.54925 * 65.05127 * 13 12 11 15 15 H 1.08005 * 119.99992 * 265.44638 * 14 13 12 16 16 C 1.37875 * 119.99733 * 85.44443 * 14 13 12 17 17 N 1.31510 * 120.00503 * 353.60265 * 16 14 13 18 18 Si 1.86805 * 119.99625 * 173.60061 * 16 14 13 19 19 H 1.48499 * 109.47201 * 60.00192 * 18 16 14 20 20 H 1.48503 * 109.46848 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47139 * 300.00148 * 18 16 14 22 22 C 1.53001 * 117.50254 * 279.38552 * 13 12 11 23 23 C 1.53003 * 117.50174 * 210.72075 * 13 12 11 24 24 H 1.09007 * 109.46419 * 300.00009 * 1 2 3 25 25 H 1.08995 * 109.47441 * 59.99433 * 1 2 3 26 26 H 1.08998 * 109.47335 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.03123 * 359.97073 * 4 3 2 28 28 H 1.08001 * 119.97182 * 180.29157 * 5 4 3 29 29 H 1.09003 * 109.47262 * 269.98151 * 7 6 5 30 30 H 1.09002 * 109.46871 * 29.97773 * 7 6 5 31 31 H 1.09003 * 109.47744 * 149.97731 * 7 6 5 32 32 H 1.08000 * 119.97125 * 180.02562 * 8 6 5 33 33 H 1.09006 * 109.46599 * 20.02535 * 10 9 8 34 34 H 1.09002 * 109.47123 * 140.02059 * 10 9 8 35 35 H 1.00897 * 111.00388 * 303.95225 * 11 10 9 36 36 H 1.09000 * 109.47102 * 305.35547 * 12 11 10 37 37 H 1.09008 * 109.46785 * 65.34700 * 12 11 10 38 38 H 0.97002 * 120.00382 * 179.97438 * 17 16 14 39 39 H 1.09004 * 117.49420 * 359.97438 * 22 13 12 40 40 H 1.08997 * 117.50366 * 145.01648 * 22 13 12 41 41 H 1.09000 * 117.49877 * 214.97591 * 23 13 12 42 42 H 1.08994 * 117.49898 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0056 5 6 1.9209 3.6048 0.0007 6 6 3.3020 3.6758 0.0002 7 6 3.9862 5.0184 0.0002 8 6 4.0560 2.5171 0.0001 9 6 3.4312 1.2848 -0.0001 10 6 4.2538 0.0221 -0.0008 11 7 4.3195 -0.5188 -1.3649 12 6 5.1158 -1.7526 -1.4043 13 6 5.2732 -2.2120 -2.8551 14 6 6.0621 -1.2886 -3.7473 15 1 5.5505 -0.5541 -4.3517 16 6 7.4370 -1.3814 -3.7920 17 7 8.0690 -2.1864 -2.9662 18 14 8.4022 -0.3637 -5.0259 19 1 8.1477 1.0792 -4.7842 20 1 9.8524 -0.6437 -4.8718 21 1 7.9736 -0.7181 -6.4028 22 6 4.1070 -2.9767 -3.4846 23 6 5.3945 -3.7156 -3.1108 24 1 -0.3632 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.2129 2.3204 -0.0105 28 1 1.3341 4.5114 0.0010 29 1 4.1511 5.3423 -1.0275 30 1 3.3582 5.7462 0.5141 31 1 4.9442 4.9382 0.5140 32 1 5.1344 2.5752 0.0001 33 1 5.2612 0.2447 0.3509 34 1 3.7925 -0.7124 0.6595 35 1 3.3947 -0.6730 -1.7378 36 1 6.0994 -1.5641 -0.9741 37 1 4.6108 -2.5294 -0.8299 38 1 9.0363 -2.2520 -2.9979 39 1 3.2277 -3.1528 -2.8648 40 1 3.9106 -2.8121 -4.5440 41 1 6.0445 -4.0369 -3.9247 42 1 5.3625 -4.3775 -2.2455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430061894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:27 Heat of formation + Delta-G solvation = -11.056044 kcal Electronic energy + Delta-G solvation = -21194.901519 eV Core-core repulsion = 18139.948324 eV Total energy + Delta-G solvation = -3054.953195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21541 -38.83122 -38.52568 -36.15162 -33.90226 -32.86203 -32.13261 -28.68300 -28.10492 -27.19234 -26.61826 -24.64779 -22.96433 -22.76307 -21.44474 -20.84576 -18.88933 -18.06552 -17.38324 -16.77130 -16.64471 -16.35872 -15.67869 -15.48266 -15.28384 -15.12025 -14.87575 -14.68037 -14.38728 -14.17076 -13.43700 -13.22632 -13.17254 -12.92887 -12.84142 -12.73981 -12.65373 -12.57805 -12.37449 -12.22085 -12.01482 -11.70327 -11.63095 -11.28828 -10.73912 -10.36636 -9.96789 -9.77024 -9.08493 -8.85943 -8.02096 -6.08445 0.40400 0.50856 1.43740 1.44973 1.52042 2.44647 2.48953 2.76297 3.27278 3.41550 3.72827 3.85862 3.90152 4.05222 4.26352 4.32890 4.42285 4.42832 4.46515 4.49741 4.58709 4.61461 4.72496 4.73294 4.78514 4.84055 4.87362 4.91017 4.98329 5.07364 5.14705 5.22277 5.27462 5.40065 5.53004 5.63867 5.73432 5.75546 5.88258 5.94810 6.34158 6.51016 6.53032 6.72793 6.94082 7.56329 9.07036 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.005244 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.452281 B = 5338.231200 C = 6567.780367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.114 3.886 4 C -0.205 4.205 5 C -0.085 4.085 6 C -0.131 4.131 7 C -0.106 4.106 8 C -0.081 4.081 9 C -0.122 4.122 10 C 0.114 3.886 11 N -0.668 5.668 12 C 0.124 3.876 13 C 0.024 3.976 14 C -0.480 4.480 15 H 0.045 0.955 16 C 0.022 3.978 17 N -0.912 5.912 18 Si 0.945 3.055 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.188 4.188 23 C -0.162 4.162 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.111 0.889 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.335 0.665 36 H 0.043 0.957 37 H 0.003 0.997 38 H 0.256 0.744 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.086 10.533 8.504 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.068 3.932 4 C -0.224 4.224 5 C -0.103 4.103 6 C -0.131 4.131 7 C -0.163 4.163 8 C -0.100 4.100 9 C -0.123 4.123 10 C -0.015 4.015 11 N -0.299 5.299 12 C -0.005 4.005 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.063 0.937 16 C -0.177 4.177 17 N -0.551 5.551 18 Si 0.771 3.229 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.225 4.225 23 C -0.201 4.201 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.152 0.848 36 H 0.061 0.939 37 H 0.021 0.979 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.284 10.668 8.375 19.697 hybrid contribution 0.188 -0.506 -0.240 0.591 sum -14.096 10.162 8.135 19.187 Atomic orbital electron populations 1.23298 0.76637 1.05199 1.02255 1.86064 1.23336 1.27076 1.88761 1.18997 0.91542 0.85153 0.97509 1.21451 1.00950 0.91693 1.08271 1.21147 0.93751 0.97850 0.97558 1.20119 0.94281 0.95847 1.02883 1.20744 1.00512 0.92349 1.02650 1.20922 1.00024 0.90999 0.98065 1.19241 0.91065 0.95563 1.06437 1.20578 0.97953 0.92870 0.90082 1.60276 1.18835 1.30898 1.19857 1.21197 0.95318 0.88299 0.95706 1.18933 0.95990 0.90361 0.92371 1.20475 0.90951 1.17171 1.23238 0.93686 1.25578 0.98508 0.96502 0.97075 1.70106 1.08091 1.39438 1.37502 0.85828 0.77532 0.79408 0.80094 1.20152 1.21094 1.19921 1.22953 0.91732 1.07560 1.00299 1.22427 0.99427 0.97038 1.01179 0.91333 0.91781 0.87050 0.83046 0.82971 0.91201 0.89779 0.91562 0.85939 0.91784 0.95306 0.84780 0.93873 0.97926 0.93468 0.89626 0.90566 0.92244 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.34 -9.43 9.68 -92.50 -0.90 -10.32 16 3 C 0.11 3.29 6.66 22.51 0.15 3.44 16 4 C -0.21 -4.67 9.04 22.37 0.20 -4.47 16 5 C -0.09 -1.81 9.69 22.25 0.22 -1.59 16 6 C -0.13 -3.19 5.88 -19.85 -0.12 -3.31 16 7 C -0.11 -1.93 10.01 71.23 0.71 -1.22 16 8 C -0.08 -2.46 9.32 22.25 0.21 -2.25 16 9 C -0.12 -4.02 5.41 -19.77 -0.11 -4.13 16 10 C 0.11 4.24 5.47 85.56 0.47 4.71 16 11 N -0.67 -28.72 6.36 -517.94 -3.30 -32.02 16 12 C 0.12 5.91 5.51 86.30 0.48 6.39 16 13 C 0.02 1.23 1.55 -52.93 -0.08 1.15 16 14 C -0.48 -27.33 8.74 25.60 0.22 -27.11 16 15 H 0.04 2.61 7.82 -2.91 -0.02 2.59 16 16 C 0.02 1.27 5.39 84.65 0.46 1.72 16 17 N -0.91 -53.84 12.92 21.45 0.28 -53.56 16 18 Si 0.94 45.34 29.54 68.60 2.03 47.37 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 22 C -0.19 -8.34 9.96 30.62 0.30 -8.03 16 23 C -0.16 -7.92 9.41 30.62 0.29 -7.63 16 24 H 0.07 0.93 7.67 -2.38 -0.02 0.91 16 25 H 0.06 0.97 7.65 -2.39 -0.02 0.95 16 26 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 27 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 28 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 31 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 32 H 0.12 3.71 8.04 -2.91 -0.02 3.68 16 33 H 0.06 2.45 8.00 -2.38 -0.02 2.43 16 34 H 0.03 1.06 7.85 -2.39 -0.02 1.04 16 35 H 0.33 13.95 8.73 -89.70 -0.78 13.17 16 36 H 0.04 2.31 8.13 -2.39 -0.02 2.29 16 37 H 0.00 0.12 8.09 -2.38 -0.02 0.10 16 38 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 40 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -65.82 351.34 2.83 -62.98 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.21 Total: 26.43 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 4.51 Total: -40.87 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -3.02 Total: -85.59 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.90 Total: -10.32 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -65.82 2.83 -62.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430061894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.926 kcal (2) G-P(sol) polarization free energy of solvation -65.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds