Wall clock time and date at job start Mon Mar 30 2020 01:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00095 * 2 1 4 4 H 1.48503 * 109.47318 * 270.00170 * 3 2 1 5 5 H 1.48497 * 109.47104 * 29.99883 * 3 2 1 6 6 H 1.48502 * 109.47193 * 150.00109 * 3 2 1 7 7 C 1.37885 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99389 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00061 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.46795 * 184.81466 * 9 7 2 11 11 C 1.46899 * 111.00176 * 290.48535 * 10 9 7 12 12 C 1.50700 * 109.47143 * 288.12097 * 11 10 9 13 13 C 1.34505 * 125.79061 * 95.49746 * 12 11 10 14 14 C 1.41383 * 106.83911 * 179.88883 * 13 12 11 15 15 C 1.34517 * 106.84206 * 0.37141 * 14 13 12 16 16 O 1.34300 * 108.41836 * 359.76901 * 15 14 13 17 17 C 1.46898 * 110.99724 * 54.44167 * 10 9 7 18 18 C 1.50696 * 109.47669 * 76.37314 * 17 10 9 19 19 C 1.29443 * 117.96041 * 94.01304 * 18 17 10 20 20 C 1.50073 * 124.07553 * 180.24237 * 19 18 17 21 21 C 1.53025 * 110.20025 * 343.31824 * 20 19 18 22 22 C 1.53391 * 108.43496 * 49.24682 * 21 20 19 23 23 C 1.50060 * 117.96332 * 274.28390 * 18 17 10 24 24 H 0.97001 * 120.00272 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47298 * 64.81745 * 9 7 2 26 26 H 1.08998 * 109.47123 * 304.81305 * 9 7 2 27 27 H 1.08996 * 109.47050 * 48.11826 * 11 10 9 28 28 H 1.09004 * 109.46911 * 168.11685 * 11 10 9 29 29 H 1.07996 * 126.58265 * 0.02562 * 13 12 11 30 30 H 1.08002 * 126.57800 * 180.15835 * 14 13 12 31 31 H 1.07995 * 125.78653 * 179.75236 * 15 14 13 32 32 H 1.08994 * 109.47481 * 316.37039 * 17 10 9 33 33 H 1.09001 * 109.46922 * 196.37228 * 17 10 9 34 34 H 1.07997 * 117.96403 * 0.47293 * 19 18 17 35 35 H 1.09004 * 109.47902 * 223.00266 * 20 19 18 36 36 H 1.09003 * 109.17938 * 103.44933 * 20 19 18 37 37 H 1.09000 * 109.64491 * 289.56564 * 21 20 19 38 38 H 1.08992 * 109.81488 * 169.03840 * 21 20 19 39 39 H 1.09001 * 109.64311 * 172.87597 * 22 21 20 40 40 H 1.09004 * 109.64274 * 52.25321 * 22 21 20 41 41 H 1.09003 * 109.36211 * 283.04972 * 23 18 17 42 42 H 1.09009 * 109.35848 * 42.77455 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5742 -0.1146 11 6 3.7238 -3.3357 1.1105 12 6 4.6315 -2.8588 2.2149 13 6 4.3204 -1.9410 3.1476 14 6 5.4552 -1.8012 3.9792 15 6 6.3948 -2.6360 3.4999 16 8 5.8903 -3.2741 2.4313 17 6 3.4252 -3.2402 -1.2904 18 6 4.1176 -2.7491 -2.5356 19 6 5.1190 -3.4359 -2.9841 20 6 5.9089 -3.0705 -4.2067 21 6 5.1349 -2.0569 -5.0524 22 6 4.6557 -0.9249 -4.1349 23 6 3.6073 -1.4910 -3.1747 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.7565 0.9312 26 1 3.8752 -0.6075 -0.8426 27 1 2.6848 -3.1859 1.4040 28 1 3.9003 -4.3957 0.9272 29 1 3.3828 -1.4137 3.2442 30 1 5.5507 -1.1469 4.8331 31 1 7.3866 -2.7701 3.9055 32 1 2.3613 -3.0120 -1.3524 33 1 3.5610 -4.3180 -1.2003 34 1 5.4013 -4.3294 -2.4472 35 1 6.0974 -3.9660 -4.7988 36 1 6.8602 -2.6348 -3.9014 37 1 4.2753 -2.5440 -5.5127 38 1 5.7841 -1.6502 -5.8277 39 1 4.2122 -0.1300 -4.7346 40 1 5.4989 -0.5320 -3.5666 41 1 2.6934 -1.7110 -3.7266 42 1 3.3935 -0.7536 -2.4009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450463862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:16 Heat of formation + Delta-G solvation = 26.542919 kcal Electronic energy + Delta-G solvation = -21920.806381 eV Core-core repulsion = 18867.483600 eV Total energy + Delta-G solvation = -3053.322781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04100 -38.60365 -36.50696 -32.54787 -32.52704 -31.62668 -30.40528 -29.54907 -27.69294 -25.44026 -23.89328 -22.63800 -21.60853 -21.21057 -20.29702 -19.49457 -17.34738 -16.97525 -16.64063 -15.73907 -15.20947 -14.87765 -14.44115 -14.16229 -13.86688 -13.73394 -13.30741 -13.00498 -12.65610 -12.40680 -12.31777 -12.21633 -12.12449 -11.85010 -11.60401 -11.34161 -10.99253 -10.89550 -10.77668 -10.55353 -10.38670 -9.96824 -9.86483 -9.65170 -9.54575 -9.41340 -8.63880 -8.26167 -7.97459 -7.25939 -6.15586 -4.14725 2.18926 2.79305 3.12642 3.23666 3.32799 3.38450 3.50420 4.35824 4.98484 5.09527 5.15060 5.18728 5.22923 5.27191 5.48840 5.59047 5.63333 5.73780 5.82624 5.84653 5.92149 5.99283 6.07544 6.16150 6.22844 6.25952 6.27800 6.36180 6.48429 6.55044 6.58769 6.63061 6.69604 6.70974 6.94158 7.00179 7.14805 7.21625 7.49372 7.66413 7.67894 7.96694 8.00266 8.38149 8.85066 9.47739 10.96857 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.008020 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.336876 B = 3490.270162 C = 5117.320702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.078 3.922 3 Si 0.867 3.133 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.146 3.854 10 N -0.525 5.525 11 C 0.131 3.869 12 C 0.021 3.979 13 C -0.208 4.208 14 C -0.214 4.214 15 C -0.061 4.061 16 O -0.174 6.174 17 C 0.081 3.919 18 C -0.079 4.079 19 C -0.173 4.173 20 C -0.081 4.081 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.093 4.093 24 H 0.264 0.736 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.194 0.806 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 -5.119 -1.869 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.125 4.125 3 Si 0.694 3.306 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.094 0.906 9 C 0.019 3.981 10 N -0.248 5.248 11 C 0.004 3.996 12 C -0.029 4.029 13 C -0.228 4.228 14 C -0.233 4.233 15 C -0.129 4.129 16 O -0.070 6.070 17 C -0.046 4.046 18 C -0.079 4.079 19 C -0.192 4.192 20 C -0.118 4.118 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.130 4.130 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.166 0.834 30 H 0.158 0.842 31 H 0.211 0.789 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.100 -5.208 -2.104 12.440 hybrid contribution -0.544 1.232 0.452 1.420 sum 10.556 -3.976 -1.652 11.400 Atomic orbital electron populations 1.69907 1.06273 1.26999 1.50195 1.24872 0.94554 0.98896 0.94175 0.86968 0.80712 0.84039 0.78870 1.19978 1.21289 1.18727 1.21582 0.90438 0.94522 1.52119 0.90595 1.20403 0.94521 0.85792 0.97347 1.62427 1.58300 1.03934 1.00153 1.20473 0.94921 0.96780 0.87466 1.22520 0.83160 0.98565 0.98700 1.21688 1.01157 1.02088 0.97834 1.21781 0.94639 1.03673 1.03223 1.23822 0.99961 0.98621 0.90509 1.84002 1.26567 1.55286 1.41173 1.21232 0.99064 0.95947 0.88317 1.20734 0.96153 0.95737 0.95307 1.21693 0.97758 1.01256 0.98475 1.20332 0.98209 0.98345 0.94946 1.21584 0.99749 0.96775 0.97468 1.21611 0.99191 0.97307 0.97593 1.20616 0.97470 0.96128 0.98791 0.92656 0.95081 0.94858 0.89995 0.90956 0.83352 0.84155 0.78910 0.91081 0.92529 0.88527 0.92087 0.91728 0.92064 0.92549 0.92286 0.92076 0.91291 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 13.96 55.43 0.77 -25.36 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.92 27.38 -169.99 -4.65 16.26 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.26 6.68 56.52 0.38 -5.88 16 7 C -0.55 -14.22 7.62 -34.44 -0.26 -14.48 16 8 H 0.08 2.13 6.33 -52.48 -0.33 1.79 16 9 C 0.15 3.38 3.57 -4.98 -0.02 3.36 16 10 N -0.52 -10.71 4.57 -238.97 -1.09 -11.80 16 11 C 0.13 2.48 5.39 -4.98 -0.03 2.46 16 12 C 0.02 0.40 6.27 -35.63 -0.22 0.18 16 13 C -0.21 -3.87 9.68 -39.71 -0.38 -4.25 16 14 C -0.21 -3.38 10.91 -39.70 -0.43 -3.82 16 15 C -0.06 -0.91 12.09 29.42 0.36 -0.55 16 16 O -0.17 -3.11 10.65 5.71 0.06 -3.05 16 17 C 0.08 1.54 4.83 -4.98 -0.02 1.52 16 18 C -0.08 -1.39 5.16 -100.95 -0.52 -1.92 16 19 C -0.17 -2.72 9.37 -35.90 -0.34 -3.05 16 20 C -0.08 -1.08 6.11 -28.17 -0.17 -1.25 16 21 C -0.12 -1.54 6.01 -26.52 -0.16 -1.70 16 22 C -0.12 -1.82 6.01 -26.52 -0.16 -1.97 16 23 C -0.09 -1.68 5.65 -28.18 -0.16 -1.84 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.76 5.79 -51.93 -0.30 0.46 16 26 H 0.03 0.80 4.64 -51.93 -0.24 0.56 16 27 H 0.08 1.66 6.80 -51.93 -0.35 1.31 16 28 H 0.07 1.21 7.68 -51.93 -0.40 0.81 16 29 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 30 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.07 1.52 5.77 -51.93 -0.30 1.22 16 33 H 0.06 0.96 7.31 -51.93 -0.38 0.58 16 34 H 0.10 1.48 7.75 -52.49 -0.41 1.07 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.96 5.09 -51.92 -0.26 1.70 16 LS Contribution 328.20 15.07 4.95 4.95 Total: -1.00 -28.94 328.20 -8.95 -37.89 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.36 Total: 6.40 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -2.62 Total: -25.29 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.32 Total: -37.16 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: 0.06 Total: -3.05 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.65 Total: 16.26 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.94 -8.95 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450463862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.428 kcal (2) G-P(sol) polarization free energy of solvation -28.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds