Wall clock time and date at job start Mon Mar 30 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00095 * 2 1 4 4 H 1.48503 * 109.47318 * 270.00170 * 3 2 1 5 5 H 1.48497 * 109.47104 * 29.99883 * 3 2 1 6 6 H 1.48502 * 109.47193 * 150.00109 * 3 2 1 7 7 C 1.37885 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99389 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00061 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.46795 * 184.81466 * 9 7 2 11 11 C 1.46899 * 111.00176 * 290.48535 * 10 9 7 12 12 C 1.50700 * 109.47143 * 288.12097 * 11 10 9 13 13 C 1.34505 * 125.79061 * 95.49746 * 12 11 10 14 14 C 1.41383 * 106.83911 * 179.88883 * 13 12 11 15 15 C 1.34517 * 106.84206 * 0.37141 * 14 13 12 16 16 O 1.34300 * 108.41836 * 359.76901 * 15 14 13 17 17 C 1.46898 * 110.99724 * 54.44167 * 10 9 7 18 18 C 1.50696 * 109.47669 * 76.37314 * 17 10 9 19 19 C 1.29443 * 117.96041 * 94.01304 * 18 17 10 20 20 C 1.50073 * 124.07553 * 180.24237 * 19 18 17 21 21 C 1.53025 * 110.20025 * 343.31824 * 20 19 18 22 22 C 1.53391 * 108.43496 * 49.24682 * 21 20 19 23 23 C 1.50060 * 117.96332 * 274.28390 * 18 17 10 24 24 H 0.97001 * 120.00272 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47298 * 64.81745 * 9 7 2 26 26 H 1.08998 * 109.47123 * 304.81305 * 9 7 2 27 27 H 1.08996 * 109.47050 * 48.11826 * 11 10 9 28 28 H 1.09004 * 109.46911 * 168.11685 * 11 10 9 29 29 H 1.07996 * 126.58265 * 0.02562 * 13 12 11 30 30 H 1.08002 * 126.57800 * 180.15835 * 14 13 12 31 31 H 1.07995 * 125.78653 * 179.75236 * 15 14 13 32 32 H 1.08994 * 109.47481 * 316.37039 * 17 10 9 33 33 H 1.09001 * 109.46922 * 196.37228 * 17 10 9 34 34 H 1.07997 * 117.96403 * 0.47293 * 19 18 17 35 35 H 1.09004 * 109.47902 * 223.00266 * 20 19 18 36 36 H 1.09003 * 109.17938 * 103.44933 * 20 19 18 37 37 H 1.09000 * 109.64491 * 289.56564 * 21 20 19 38 38 H 1.08992 * 109.81488 * 169.03840 * 21 20 19 39 39 H 1.09001 * 109.64311 * 172.87597 * 22 21 20 40 40 H 1.09004 * 109.64274 * 52.25321 * 22 21 20 41 41 H 1.09003 * 109.36211 * 283.04972 * 23 18 17 42 42 H 1.09009 * 109.35848 * 42.77455 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5742 -0.1146 11 6 3.7238 -3.3357 1.1105 12 6 4.6315 -2.8588 2.2149 13 6 4.3204 -1.9410 3.1476 14 6 5.4552 -1.8012 3.9792 15 6 6.3948 -2.6360 3.4999 16 8 5.8903 -3.2741 2.4313 17 6 3.4252 -3.2402 -1.2904 18 6 4.1176 -2.7491 -2.5356 19 6 5.1190 -3.4359 -2.9841 20 6 5.9089 -3.0705 -4.2067 21 6 5.1349 -2.0569 -5.0524 22 6 4.6557 -0.9249 -4.1349 23 6 3.6073 -1.4910 -3.1747 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.7565 0.9312 26 1 3.8752 -0.6075 -0.8426 27 1 2.6848 -3.1859 1.4040 28 1 3.9003 -4.3957 0.9272 29 1 3.3828 -1.4137 3.2442 30 1 5.5507 -1.1469 4.8331 31 1 7.3866 -2.7701 3.9055 32 1 2.3613 -3.0120 -1.3524 33 1 3.5610 -4.3180 -1.2003 34 1 5.4013 -4.3294 -2.4472 35 1 6.0974 -3.9660 -4.7988 36 1 6.8602 -2.6348 -3.9014 37 1 4.2753 -2.5440 -5.5127 38 1 5.7841 -1.6502 -5.8277 39 1 4.2122 -0.1300 -4.7346 40 1 5.4989 -0.5320 -3.5666 41 1 2.6934 -1.7110 -3.7266 42 1 3.3935 -0.7536 -2.4009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450463862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:15 Heat of formation + Delta-G solvation = 10.024846 kcal Electronic energy + Delta-G solvation = -21921.522659 eV Core-core repulsion = 18867.483600 eV Total energy + Delta-G solvation = -3054.039059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.37298 -39.99647 -38.00581 -34.60954 -33.88198 -32.93061 -31.73822 -30.99891 -29.45619 -26.82664 -25.68821 -23.90566 -22.99523 -22.54069 -21.70780 -21.03708 -19.23404 -18.37215 -17.97528 -17.18042 -16.69512 -16.44168 -16.02379 -15.95543 -15.21487 -15.01301 -14.61846 -14.50260 -14.38065 -13.85888 -13.72034 -13.65211 -13.43243 -13.16786 -13.06705 -12.96615 -12.68697 -12.52418 -12.32928 -12.22296 -11.79868 -11.71704 -11.56646 -11.12905 -10.92868 -10.79794 -10.72255 -9.61014 -9.31597 -8.97853 -8.31013 -6.32443 0.86414 1.28985 1.32120 1.42749 1.48048 1.78721 2.20899 2.31190 3.05083 3.44939 3.86577 3.93991 3.98602 4.10892 4.21400 4.24569 4.34342 4.42101 4.51456 4.60567 4.68709 4.71479 4.73809 4.83427 4.95168 4.98498 5.03012 5.05820 5.07937 5.11520 5.16363 5.22307 5.29366 5.37774 5.43200 5.50898 5.51452 5.67619 5.89621 6.06683 6.25338 6.31399 6.35645 6.39767 6.71567 7.32736 8.84627 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.008020 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.336876 B = 3490.270162 C = 5117.320702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.025 3.975 3 Si 0.924 3.076 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.531 4.531 8 H 0.044 0.956 9 C 0.162 3.838 10 N -0.521 5.521 11 C 0.133 3.867 12 C -0.001 4.001 13 C -0.226 4.226 14 C -0.228 4.228 15 C -0.040 4.040 16 O -0.183 6.183 17 C 0.086 3.914 18 C -0.111 4.111 19 C -0.148 4.148 20 C -0.083 4.083 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.092 4.092 24 H 0.264 0.736 25 H 0.020 0.980 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.167 0.833 31 H 0.245 0.755 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.163 -5.510 -2.448 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.174 4.174 3 Si 0.749 3.251 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.570 4.570 8 H 0.062 0.938 9 C 0.035 3.965 10 N -0.244 5.244 11 C 0.006 3.994 12 C -0.052 4.052 13 C -0.246 4.246 14 C -0.247 4.247 15 C -0.107 4.107 16 O -0.079 6.079 17 C -0.041 4.041 18 C -0.112 4.112 19 C -0.167 4.167 20 C -0.120 4.120 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.128 4.128 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.147 0.853 30 H 0.184 0.816 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.662 -5.611 -2.686 15.927 hybrid contribution -1.610 1.225 0.681 2.135 sum 13.052 -4.386 -2.005 13.915 Atomic orbital electron populations 1.70036 1.07876 1.27796 1.52447 1.25606 0.95190 1.02278 0.94292 0.86046 0.79604 0.80115 0.79329 1.18936 1.21068 1.18027 1.21706 0.92002 0.93131 1.50169 0.93811 1.20113 0.92145 0.87799 0.96447 1.62471 1.57770 1.02904 1.01277 1.20402 0.93958 0.97935 0.87132 1.22320 0.84085 0.99652 0.99119 1.21781 1.01612 1.02195 0.99013 1.22083 0.93702 1.04894 1.03977 1.24796 1.01194 0.96327 0.88428 1.83992 1.25824 1.55748 1.42379 1.21209 0.97090 0.97055 0.88715 1.20616 0.98080 0.96846 0.95641 1.22006 0.95927 1.00176 0.98613 1.20440 0.97938 0.99607 0.93988 1.21576 1.00221 0.95826 0.97453 1.21602 0.98082 0.98398 0.97408 1.20513 0.98317 0.95655 0.98359 0.92661 0.96183 0.95004 0.92538 0.88638 0.85314 0.81583 0.73936 0.94703 0.90428 0.87675 0.89451 0.90661 0.92054 0.89945 0.91554 0.92447 0.92365 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 2 C 0.02 1.42 5.47 84.66 0.46 1.88 16 3 Si 0.92 44.23 27.38 68.60 1.88 46.11 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.26 -11.88 6.68 99.48 0.66 -11.22 16 7 C -0.53 -29.09 7.62 25.60 0.20 -28.89 16 8 H 0.04 2.64 6.33 -2.91 -0.02 2.62 16 9 C 0.16 7.75 3.57 85.56 0.31 8.06 16 10 N -0.52 -21.66 4.57 -909.96 -4.16 -25.82 16 11 C 0.13 5.17 5.39 85.56 0.46 5.63 16 12 C 0.00 -0.05 6.27 24.83 0.16 0.11 16 13 C -0.23 -8.47 9.68 22.19 0.21 -8.26 16 14 C -0.23 -6.74 10.91 22.19 0.24 -6.50 16 15 C -0.04 -1.06 12.09 66.97 0.81 -0.25 16 16 O -0.18 -6.15 10.65 -2.50 -0.03 -6.18 16 17 C 0.09 3.35 4.83 85.56 0.41 3.76 16 18 C -0.11 -3.90 5.16 -15.10 -0.08 -3.98 16 19 C -0.15 -4.30 9.37 27.04 0.25 -4.05 16 20 C -0.08 -1.88 6.11 29.66 0.18 -1.70 16 21 C -0.11 -2.60 6.01 30.73 0.18 -2.42 16 22 C -0.12 -3.40 6.01 30.73 0.18 -3.21 16 23 C -0.09 -3.35 5.65 29.66 0.17 -3.18 16 24 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 25 H 0.02 1.01 5.79 -2.39 -0.01 0.99 16 26 H 0.03 1.56 4.64 -2.39 -0.01 1.55 16 27 H 0.06 2.45 6.80 -2.39 -0.02 2.44 16 28 H 0.10 3.18 7.68 -2.38 -0.02 3.16 16 29 H 0.13 5.24 8.06 -2.91 -0.02 5.21 16 30 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.24 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.03 1.59 5.77 -2.39 -0.01 1.58 16 33 H 0.08 2.61 7.31 -2.39 -0.02 2.60 16 34 H 0.11 2.88 7.75 -2.91 -0.02 2.86 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.06 1.69 8.12 -2.38 -0.02 1.67 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.06 2.45 5.09 -2.38 -0.01 2.44 16 Total: -1.00 -65.43 328.20 3.10 -62.33 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.96 Total: 23.69 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 4.15 Total: -43.00 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -3.86 Total: -82.95 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.03 Total: -6.18 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.11 kcal Total: -65.43 3.10 -62.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450463862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.356 kcal (2) G-P(sol) polarization free energy of solvation -65.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds