Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47313 * 314.42028 * 3 2 1 5 5 C 1.36816 * 119.99749 * 273.82313 * 4 3 2 6 6 H 1.08004 * 119.99618 * 176.34070 * 5 4 3 7 7 C 1.39070 * 120.00558 * 356.33301 * 5 4 3 8 8 N 1.31355 * 119.99880 * 33.29391 * 7 5 4 9 9 Si 1.86799 * 120.00233 * 213.29922 * 7 5 4 10 10 H 1.48511 * 109.47236 * 94.99447 * 9 7 5 11 11 H 1.48496 * 109.47100 * 214.99423 * 9 7 5 12 12 H 1.48499 * 109.47420 * 334.99965 * 9 7 5 13 13 C 1.34779 * 119.99882 * 93.81702 * 4 3 2 14 14 O 1.21661 * 119.99686 * 185.72264 * 13 4 3 15 15 C 1.46951 * 119.99957 * 5.73008 * 13 4 3 16 16 C 1.31683 * 118.11609 * 82.18030 * 15 13 4 17 17 C 1.50706 * 118.11169 * 0.39903 * 16 15 13 18 18 C 1.50096 * 123.77620 * 180.67585 * 16 15 13 19 19 C 1.53150 * 110.04581 * 342.39591 * 18 16 15 20 20 C 1.52996 * 109.81359 * 290.35876 * 19 18 16 21 21 C 1.53003 * 109.57500 * 169.69434 * 19 18 16 22 22 C 1.53362 * 108.38868 * 50.09797 * 19 18 16 23 23 C 1.50102 * 118.10942 * 262.15927 * 15 13 4 24 24 H 4.40648 * 5.51399 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.46915 * 194.42108 * 3 2 1 26 26 H 1.08995 * 109.47215 * 74.42586 * 3 2 1 27 27 H 0.96994 * 119.99817 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47268 * 354.68148 * 17 16 15 29 29 H 1.08997 * 109.47185 * 114.68235 * 17 16 15 30 30 H 1.09001 * 109.47141 * 234.68468 * 17 16 15 31 31 H 1.08997 * 109.35994 * 102.77415 * 18 16 15 32 32 H 1.08997 * 109.36190 * 222.36876 * 18 16 15 33 33 H 1.08998 * 109.47727 * 178.97755 * 20 19 18 34 34 H 1.09004 * 109.47123 * 298.97530 * 20 19 18 35 35 H 1.08997 * 109.47371 * 58.97324 * 20 19 18 36 36 H 1.09001 * 109.47524 * 301.16884 * 21 19 18 37 37 H 1.09005 * 109.47385 * 61.17118 * 21 19 18 38 38 H 1.09004 * 109.47267 * 181.16476 * 21 19 18 39 39 H 1.09000 * 109.63282 * 172.07968 * 22 19 18 40 40 H 1.09002 * 109.79096 * 51.58449 * 22 19 18 41 41 H 1.08997 * 109.36113 * 283.02895 * 23 15 13 42 42 H 1.09001 * 109.36083 * 42.76215 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -0.9659 0.9865 5 6 3.2882 -0.5912 2.2934 6 1 3.5918 -1.3188 3.0316 7 6 3.0534 0.7264 2.6713 8 7 2.1277 1.4299 2.0600 9 14 4.0544 1.4958 4.0480 10 1 5.2026 2.2391 3.4695 11 1 3.1975 2.4313 4.8198 12 1 4.5591 0.4288 4.9491 13 6 3.4333 -2.2241 0.6066 14 8 3.7391 -3.0550 1.4410 15 6 3.3896 -2.5922 -0.8154 16 6 4.4344 -2.3043 -1.5634 17 6 5.6100 -1.6245 -0.9098 18 6 4.5196 -2.6088 -3.0306 19 6 3.4646 -3.6512 -3.4126 20 6 3.8344 -5.0081 -2.8101 21 6 3.3849 -3.7654 -4.9363 22 6 2.1097 -3.1936 -2.8587 23 6 2.1566 -3.2751 -1.3315 24 1 -1.0499 -0.0001 0.0003 25 1 3.0089 0.9961 0.2559 26 1 3.0095 -0.2751 -0.9899 27 1 1.9637 2.3488 2.3239 28 1 5.3614 -1.3826 0.1236 29 1 6.4722 -2.2909 -0.9296 30 1 5.8465 -0.7081 -1.4505 31 1 4.3516 -1.6945 -3.5998 32 1 5.5108 -2.9989 -3.2618 33 1 3.0710 -5.7413 -3.0700 34 1 4.7976 -5.3308 -3.2055 35 1 3.8983 -4.9189 -1.7257 36 1 3.1298 -2.7943 -5.3606 37 1 4.3490 -4.0908 -5.3272 38 1 2.6192 -4.4926 -5.2066 39 1 1.3211 -3.8447 -3.2360 40 1 1.9139 -2.1660 -3.1647 41 1 2.1681 -4.3213 -1.0257 42 1 1.2736 -2.7876 -0.9183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491535580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = 31.415433 kcal Electronic energy + Delta-G solvation = -22512.617851 eV Core-core repulsion = 19459.506358 eV Total energy + Delta-G solvation = -3053.111493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.95800 -38.03535 -35.11015 -33.70201 -32.05869 -31.48233 -31.17333 -27.23076 -27.17479 -26.59927 -26.22783 -24.39626 -22.50423 -20.55778 -18.86545 -17.94286 -16.87024 -16.31472 -15.78043 -15.05073 -14.86162 -14.52173 -14.30888 -13.99290 -13.65634 -13.44253 -13.02977 -12.65954 -12.44346 -12.25420 -12.13265 -11.83920 -11.81995 -11.70123 -11.60498 -11.50713 -11.20519 -11.05437 -11.01001 -10.50177 -10.36768 -10.28528 -10.22317 -9.92721 -9.39510 -9.17172 -8.76429 -8.44604 -8.04051 -7.93489 -6.44583 -3.74027 2.47855 3.13712 3.27150 3.32847 3.66746 3.95341 4.10133 4.19554 4.74665 4.79278 4.91147 4.97634 5.13860 5.39956 5.47006 5.54742 5.57566 5.62574 5.67899 5.76629 5.80416 5.83512 5.90364 5.97484 6.04980 6.10567 6.16080 6.22063 6.25438 6.30387 6.38096 6.43284 6.48771 6.61515 6.63660 6.87685 7.01000 7.06010 7.40355 7.55079 8.05306 8.44479 8.82783 9.14122 9.38744 9.95655 10.57772 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.006030 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.039482 B = 4642.325803 C = 5077.140973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.108 4.108 3 C 0.223 3.777 4 N -0.432 5.432 5 C -0.325 4.325 6 H 0.109 0.891 7 C 0.040 3.960 8 N -0.846 5.846 9 Si 0.907 3.093 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.481 3.519 14 O -0.588 6.588 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.128 4.128 18 C -0.065 4.065 19 C -0.066 4.066 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.105 4.105 23 C -0.073 4.073 24 H 0.199 0.801 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.269 0.731 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -3.904 -13.050 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.110 4.110 3 C 0.100 3.900 4 N -0.149 5.149 5 C -0.451 4.451 6 H 0.127 0.873 7 C -0.165 4.165 8 N -0.483 5.483 9 Si 0.733 3.267 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.271 3.729 14 O -0.474 6.474 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.185 4.185 18 C -0.101 4.101 19 C -0.066 4.066 20 C -0.201 4.201 21 C -0.196 4.196 22 C -0.142 4.142 23 C -0.110 4.110 24 H 0.216 0.784 25 H 0.132 0.868 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.744 -4.094 -12.588 13.352 hybrid contribution -0.010 0.667 0.793 1.036 sum 1.734 -3.426 -11.795 12.405 Atomic orbital electron populations 1.24271 0.95374 1.04195 1.04724 1.23262 0.94387 0.96983 0.96340 1.18576 0.84221 0.96350 0.90867 1.43782 1.54625 1.08308 1.08210 1.19647 1.45495 0.94521 0.85482 0.87341 1.25198 0.95573 0.96791 0.98982 1.70259 1.24678 1.10712 1.42648 0.86213 0.80324 0.79108 0.81007 1.20281 1.21234 1.19229 1.17968 0.84532 0.82420 0.87960 1.90638 1.54495 1.49047 1.53173 1.20731 0.96283 1.01103 0.94152 1.21171 0.95521 1.00049 0.94724 1.21060 0.96211 0.99297 1.01942 1.20427 0.98762 0.98327 0.92632 1.20613 0.95575 0.95553 0.94814 1.21924 1.00478 0.95485 1.02200 1.21846 1.01407 1.01517 0.94816 1.21651 0.96111 1.01345 0.95098 1.20282 0.95598 1.00364 0.94787 0.78403 0.86807 0.91556 0.92077 0.90261 0.92104 0.92129 0.90931 0.91308 0.93059 0.93154 0.91354 0.92725 0.92853 0.92794 0.91888 0.91687 0.90638 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.63 19.25 29.55 0.57 -5.06 16 2 C -0.11 -2.48 11.88 -37.12 -0.44 -2.92 16 3 C 0.22 5.05 5.15 -6.83 -0.04 5.02 16 4 N -0.43 -10.95 2.20 -119.34 -0.26 -11.21 16 5 C -0.32 -8.98 9.37 -15.02 -0.14 -9.12 16 6 H 0.11 3.22 7.35 -52.48 -0.39 2.83 16 7 C 0.04 1.04 4.88 -17.45 -0.09 0.95 16 8 N -0.85 -21.93 9.41 55.50 0.52 -21.41 16 9 Si 0.91 20.29 29.66 -169.99 -5.04 15.25 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.48 11.89 4.68 -12.73 -0.06 11.83 16 14 O -0.59 -16.81 16.69 5.22 0.09 -16.73 16 15 C -0.12 -2.33 3.26 -103.26 -0.34 -2.66 16 16 C -0.11 -1.91 4.72 -101.51 -0.48 -2.39 16 17 C -0.13 -2.20 9.76 36.01 0.35 -1.84 16 18 C -0.06 -0.84 4.58 -28.10 -0.13 -0.97 16 19 C -0.07 -0.79 0.79 -154.24 -0.12 -0.92 16 20 C -0.14 -1.80 7.81 37.16 0.29 -1.51 16 21 C -0.14 -1.35 8.49 37.16 0.32 -1.04 16 22 C -0.10 -1.40 4.93 -26.54 -0.13 -1.53 16 23 C -0.07 -1.25 5.16 -28.17 -0.15 -1.39 16 24 H 0.20 3.40 7.80 -54.10 -0.42 2.98 16 25 H 0.11 2.72 6.00 -51.93 -0.31 2.41 16 26 H 0.07 1.33 6.09 -51.93 -0.32 1.01 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.28 16 28 H 0.08 1.66 5.64 -51.93 -0.29 1.37 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.88 8.11 -51.93 -0.42 0.45 16 32 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.03 5.68 -51.93 -0.29 0.74 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.88 8.12 -51.93 -0.42 0.45 16 41 H 0.08 1.28 6.92 -51.93 -0.36 0.92 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -30.52 335.41 -6.80 -37.32 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.59 Total: 5.27 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.58 Total: -13.55 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.26 Total: -32.62 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.09 Total: -16.73 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.04 Total: 15.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.52 -6.80 -37.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491535580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.737 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds