Wall clock time and date at job start Mon Mar 30 2020 01:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47313 * 314.42028 * 3 2 1 5 5 C 1.36816 * 119.99749 * 273.82313 * 4 3 2 6 6 H 1.08004 * 119.99618 * 176.34070 * 5 4 3 7 7 C 1.39070 * 120.00558 * 356.33301 * 5 4 3 8 8 N 1.31355 * 119.99880 * 33.29391 * 7 5 4 9 9 Si 1.86799 * 120.00233 * 213.29922 * 7 5 4 10 10 H 1.48511 * 109.47236 * 94.99447 * 9 7 5 11 11 H 1.48496 * 109.47100 * 214.99423 * 9 7 5 12 12 H 1.48499 * 109.47420 * 334.99965 * 9 7 5 13 13 C 1.34779 * 119.99882 * 93.81702 * 4 3 2 14 14 O 1.21661 * 119.99686 * 185.72264 * 13 4 3 15 15 C 1.46951 * 119.99957 * 5.73008 * 13 4 3 16 16 C 1.31683 * 118.11609 * 82.18030 * 15 13 4 17 17 C 1.50706 * 118.11169 * 0.39903 * 16 15 13 18 18 C 1.50096 * 123.77620 * 180.67585 * 16 15 13 19 19 C 1.53150 * 110.04581 * 342.39591 * 18 16 15 20 20 C 1.52996 * 109.81359 * 290.35876 * 19 18 16 21 21 C 1.53003 * 109.57500 * 169.69434 * 19 18 16 22 22 C 1.53362 * 108.38868 * 50.09797 * 19 18 16 23 23 C 1.50102 * 118.10942 * 262.15927 * 15 13 4 24 24 H 4.40648 * 5.51399 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.46915 * 194.42108 * 3 2 1 26 26 H 1.08995 * 109.47215 * 74.42586 * 3 2 1 27 27 H 0.96994 * 119.99817 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47268 * 354.68148 * 17 16 15 29 29 H 1.08997 * 109.47185 * 114.68235 * 17 16 15 30 30 H 1.09001 * 109.47141 * 234.68468 * 17 16 15 31 31 H 1.08997 * 109.35994 * 102.77415 * 18 16 15 32 32 H 1.08997 * 109.36190 * 222.36876 * 18 16 15 33 33 H 1.08998 * 109.47727 * 178.97755 * 20 19 18 34 34 H 1.09004 * 109.47123 * 298.97530 * 20 19 18 35 35 H 1.08997 * 109.47371 * 58.97324 * 20 19 18 36 36 H 1.09001 * 109.47524 * 301.16884 * 21 19 18 37 37 H 1.09005 * 109.47385 * 61.17118 * 21 19 18 38 38 H 1.09004 * 109.47267 * 181.16476 * 21 19 18 39 39 H 1.09000 * 109.63282 * 172.07968 * 22 19 18 40 40 H 1.09002 * 109.79096 * 51.58449 * 22 19 18 41 41 H 1.08997 * 109.36113 * 283.02895 * 23 15 13 42 42 H 1.09001 * 109.36083 * 42.76215 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -0.9659 0.9865 5 6 3.2882 -0.5912 2.2934 6 1 3.5918 -1.3188 3.0316 7 6 3.0534 0.7264 2.6713 8 7 2.1277 1.4299 2.0600 9 14 4.0544 1.4958 4.0480 10 1 5.2026 2.2391 3.4695 11 1 3.1975 2.4313 4.8198 12 1 4.5591 0.4288 4.9491 13 6 3.4333 -2.2241 0.6066 14 8 3.7391 -3.0550 1.4410 15 6 3.3896 -2.5922 -0.8154 16 6 4.4344 -2.3043 -1.5634 17 6 5.6100 -1.6245 -0.9098 18 6 4.5196 -2.6088 -3.0306 19 6 3.4646 -3.6512 -3.4126 20 6 3.8344 -5.0081 -2.8101 21 6 3.3849 -3.7654 -4.9363 22 6 2.1097 -3.1936 -2.8587 23 6 2.1566 -3.2751 -1.3315 24 1 -1.0499 -0.0001 0.0003 25 1 3.0089 0.9961 0.2559 26 1 3.0095 -0.2751 -0.9899 27 1 1.9637 2.3488 2.3239 28 1 5.3614 -1.3826 0.1236 29 1 6.4722 -2.2909 -0.9296 30 1 5.8465 -0.7081 -1.4505 31 1 4.3516 -1.6945 -3.5998 32 1 5.5108 -2.9989 -3.2618 33 1 3.0710 -5.7413 -3.0700 34 1 4.7976 -5.3308 -3.2055 35 1 3.8983 -4.9189 -1.7257 36 1 3.1298 -2.7943 -5.3606 37 1 4.3490 -4.0908 -5.3272 38 1 2.6192 -4.4926 -5.2066 39 1 1.3211 -3.8447 -3.2360 40 1 1.9139 -2.1660 -3.1647 41 1 2.1681 -4.3213 -1.0257 42 1 1.2736 -2.7876 -0.9183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491535580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:30 Heat of formation + Delta-G solvation = 15.300637 kcal Electronic energy + Delta-G solvation = -22513.316641 eV Core-core repulsion = 19459.506358 eV Total energy + Delta-G solvation = -3053.810283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43639 -39.56330 -37.06838 -35.08256 -33.91022 -33.04609 -32.74235 -28.64214 -28.16766 -28.01185 -27.71378 -26.18383 -23.74805 -22.19012 -20.10421 -19.80326 -18.55967 -18.11374 -17.30622 -16.58053 -16.41395 -16.17134 -15.66208 -15.41189 -15.01720 -14.90045 -14.37475 -14.08090 -13.99402 -13.88876 -13.64009 -13.28572 -13.18715 -12.99593 -12.86131 -12.72533 -12.57088 -12.44818 -12.41343 -12.18345 -12.15906 -11.44239 -11.35792 -11.17294 -11.04252 -11.01423 -10.60898 -10.28509 -9.98985 -9.45391 -8.46015 -5.83649 1.05296 1.31045 1.40487 1.52076 1.84252 2.14524 2.32257 2.35202 2.92767 3.25092 3.70019 3.79955 3.91566 3.94437 4.18380 4.22160 4.29143 4.51080 4.53000 4.56307 4.64302 4.71460 4.83487 4.86900 4.97590 4.99850 5.03393 5.03831 5.05920 5.10167 5.16071 5.23456 5.31966 5.37584 5.40230 5.45955 5.46230 5.62241 5.71263 5.99917 6.04465 6.43409 7.09763 7.12542 7.42006 8.01018 8.55026 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.006030 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.039482 B = 4642.325803 C = 5077.140973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.154 4.154 3 C 0.232 3.768 4 N -0.438 5.438 5 C -0.368 4.368 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.853 5.853 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.280 1.280 13 C 0.475 3.525 14 O -0.646 6.646 15 C -0.151 4.151 16 C -0.087 4.087 17 C -0.133 4.133 18 C -0.064 4.064 19 C -0.062 4.062 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.097 4.097 23 C -0.065 4.065 24 H 0.235 0.765 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.276 0.724 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -3.056 -15.992 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.156 4.156 3 C 0.110 3.890 4 N -0.154 5.154 5 C -0.495 4.495 6 H 0.089 0.911 7 C -0.188 4.188 8 N -0.488 5.488 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.200 1.200 12 H -0.205 1.205 13 C 0.267 3.733 14 O -0.535 6.535 15 C -0.154 4.154 16 C -0.088 4.088 17 C -0.189 4.189 18 C -0.101 4.101 19 C -0.062 4.062 20 C -0.200 4.200 21 C -0.189 4.189 22 C -0.134 4.134 23 C -0.103 4.103 24 H 0.252 0.748 25 H 0.116 0.884 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.830 -3.209 -15.561 15.994 hybrid contribution -0.052 0.427 1.756 1.808 sum 1.778 -2.782 -13.805 14.194 Atomic orbital electron populations 1.25169 0.96356 1.02225 1.02804 1.23544 0.95092 0.98795 0.98134 1.18468 0.84626 0.94793 0.91100 1.43904 1.54495 1.09120 1.07919 1.19433 1.48536 0.95074 0.86415 0.91076 1.25834 0.95541 0.96198 1.01242 1.70304 1.24284 1.10960 1.43282 0.85285 0.79143 0.77856 0.78217 1.18775 1.19968 1.20532 1.18879 0.82831 0.81607 0.90000 1.90568 1.56836 1.50583 1.55540 1.20533 0.98920 1.04557 0.91368 1.21588 0.93640 0.96823 0.96776 1.21109 0.97024 1.01101 0.99690 1.20586 1.00397 0.99839 0.89286 1.20619 0.94140 0.94683 0.96753 1.21909 1.01751 0.96361 0.99998 1.21784 1.02556 1.02459 0.92124 1.21642 0.97850 1.02154 0.91760 1.20214 0.93383 0.99007 0.97694 0.74831 0.88397 0.89305 0.91372 0.94729 0.90444 0.89347 0.88645 0.89186 0.91943 0.91760 0.94793 0.91803 0.91582 0.91930 0.89989 0.91330 0.91667 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.19 19.25 74.32 1.43 -8.76 16 2 C -0.15 -7.12 11.88 31.13 0.37 -6.75 16 3 C 0.23 10.79 5.15 84.57 0.44 11.23 16 4 N -0.44 -23.42 2.20 -649.70 -1.43 -24.85 16 5 C -0.37 -21.55 9.37 84.12 0.79 -20.76 16 6 H 0.07 4.60 7.35 -2.91 -0.02 4.58 16 7 C 0.02 0.93 4.88 84.96 0.41 1.34 16 8 N -0.85 -44.47 9.41 21.68 0.20 -44.27 16 9 Si 0.97 42.44 29.66 68.60 2.03 44.47 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.47 24.97 4.68 86.53 0.41 25.38 16 14 O -0.65 -39.99 16.69 -4.22 -0.07 -40.06 16 15 C -0.15 -6.03 3.26 -18.44 -0.06 -6.09 16 16 C -0.09 -2.86 4.72 -17.31 -0.08 -2.94 16 17 C -0.13 -4.48 9.76 71.24 0.70 -3.79 16 18 C -0.06 -1.46 4.58 29.71 0.14 -1.32 16 19 C -0.06 -1.30 0.79 -52.01 -0.04 -1.34 16 20 C -0.14 -3.28 7.81 71.98 0.56 -2.72 16 21 C -0.13 -1.95 8.49 71.98 0.61 -1.34 16 22 C -0.10 -2.38 4.93 30.72 0.15 -2.22 16 23 C -0.07 -2.28 5.16 29.66 0.15 -2.12 16 24 H 0.24 7.43 7.80 -4.42 -0.03 7.40 16 25 H 0.10 4.79 6.00 -2.39 -0.01 4.77 16 26 H 0.09 3.59 6.09 -2.39 -0.01 3.57 16 27 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 28 H 0.03 1.49 5.64 -2.39 -0.01 1.48 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 31 H 0.10 1.84 8.11 -2.39 -0.02 1.82 16 32 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.03 1.01 5.68 -2.39 -0.01 1.00 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 41 H 0.06 2.33 6.92 -2.39 -0.02 2.31 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -71.36 335.41 7.70 -63.65 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.99 Total: 23.25 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.97 Total: -22.20 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.22 Total: -69.12 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.07 Total: -40.06 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -71.36 7.70 -63.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491535580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.956 kcal (2) G-P(sol) polarization free energy of solvation -71.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds