Wall clock time and date at job start Mon Mar 30 2020 01:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 115.54714 * 2 1 4 4 N 1.46501 * 109.47157 * 279.51357 * 3 2 1 5 5 C 1.39670 * 119.99744 * 175.32829 * 4 3 2 6 6 C 1.38976 * 120.04628 * 0.02562 * 5 4 3 7 7 C 1.38109 * 120.03227 * 180.02562 * 6 5 4 8 8 C 1.38220 * 120.13193 * 0.28069 * 7 6 5 9 9 C 1.38771 * 120.08820 * 359.44587 * 8 7 6 10 10 O 1.35897 * 120.01521 * 180.25452 * 9 8 7 11 11 C 1.42897 * 117.00159 * 0.29872 * 10 9 8 12 12 C 1.53000 * 109.47083 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47046 * 179.97438 * 12 11 10 14 14 H 1.08006 * 120.00223 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00062 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99977 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99819 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47053 * 89.99750 * 17 15 13 19 19 H 1.48504 * 109.46705 * 210.00042 * 17 15 13 20 20 H 1.48503 * 109.46874 * 329.99528 * 17 15 13 21 21 C 1.38619 * 119.96376 * 0.54996 * 9 8 7 22 22 C 1.52998 * 117.51679 * 145.70839 * 2 1 3 23 23 C 1.52992 * 60.00209 * 107.47614 * 22 2 1 24 24 H 1.08995 * 109.47334 * 63.83268 * 1 2 3 25 25 H 1.09004 * 109.47004 * 183.83475 * 1 2 3 26 26 H 1.09005 * 109.46553 * 303.82795 * 1 2 3 27 27 H 1.09005 * 109.46545 * 159.51840 * 3 2 1 28 28 H 1.08996 * 109.47015 * 39.51946 * 3 2 1 29 29 H 0.97000 * 119.99949 * 355.33453 * 4 3 2 30 30 H 1.08001 * 119.98401 * 359.97438 * 6 5 4 31 31 H 1.08010 * 119.93466 * 179.97438 * 7 6 5 32 32 H 1.08000 * 119.95009 * 179.69619 * 8 7 6 33 33 H 1.09004 * 109.47132 * 299.99597 * 11 10 9 34 34 H 1.08994 * 109.47452 * 59.99301 * 11 10 9 35 35 H 1.09000 * 109.47153 * 299.99424 * 12 11 10 36 36 H 1.09001 * 109.47292 * 59.99611 * 12 11 10 37 37 H 0.96996 * 120.00173 * 179.97438 * 16 15 13 38 38 H 1.07999 * 120.06208 * 179.75021 * 21 9 8 39 39 H 1.09004 * 117.49218 * 214.96528 * 22 2 1 40 40 H 1.08995 * 117.50381 * 359.97438 * 22 2 1 41 41 H 1.09002 * 117.50275 * 252.50740 * 23 22 2 42 42 H 1.09005 * 117.50006 * 107.48313 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.1945 1.9194 -1.3622 5 6 2.6591 3.2151 -1.5989 6 6 3.1178 3.9936 -0.5430 7 6 3.5767 5.2750 -0.7772 8 6 3.5758 5.7886 -2.0605 9 6 3.1243 5.0138 -3.1196 10 8 3.1289 5.5184 -4.3814 11 6 3.6181 6.8509 -4.5455 12 6 3.5471 7.2420 -6.0230 13 6 4.0624 8.6475 -6.1959 14 1 4.4066 9.2060 -5.3379 15 6 4.0956 9.2203 -7.4497 16 7 4.5458 10.4467 -7.6007 17 14 3.5010 8.2542 -8.9338 18 1 2.0496 8.4969 -9.1334 19 1 4.2468 8.6925 -10.1409 20 1 3.7340 6.8052 -8.7070 21 6 2.6629 3.7272 -2.8888 22 6 2.2369 -1.1210 0.7645 23 6 2.2364 -1.1207 -0.7654 24 1 -0.3634 0.4532 -0.9223 25 1 -0.3633 -1.0254 0.0687 26 1 -0.3632 0.5721 0.8538 27 1 3.2152 1.2929 0.3596 28 1 1.6313 2.0500 0.6539 29 1 1.8748 1.3765 -2.0997 30 1 3.1146 3.5967 0.4615 31 1 3.9324 5.8788 0.0447 32 1 3.9307 6.7927 -2.2397 33 1 3.0078 7.5370 -3.9580 34 1 4.6523 6.9028 -4.2055 35 1 4.1577 6.5560 -6.6101 36 1 2.5129 7.1901 -6.3633 37 1 4.5694 10.8495 -8.4827 38 1 2.3074 3.1243 -3.7113 39 1 3.1722 -0.8751 1.2675 40 1 1.6121 -1.8586 1.2680 41 1 1.6112 -1.8582 -1.2687 42 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564394722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:26 Heat of formation + Delta-G solvation = -18.207426 kcal Electronic energy + Delta-G solvation = -20033.785578 eV Core-core repulsion = 16978.522276 eV Total energy + Delta-G solvation = -3055.263302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.06323 -39.74070 -38.51468 -35.64045 -35.19568 -32.91006 -31.31320 -30.06476 -29.28680 -27.40915 -26.50745 -23.82849 -23.30014 -22.94465 -21.72960 -20.11720 -19.47800 -18.60534 -17.41274 -16.96363 -16.85949 -16.56873 -16.37557 -16.08999 -15.62091 -15.28965 -14.71942 -14.58779 -14.43314 -14.13410 -14.08762 -13.84173 -13.31223 -13.26249 -13.04135 -12.62407 -12.50794 -12.37741 -12.29453 -12.13928 -11.93236 -11.75284 -11.61244 -11.40979 -11.16557 -10.83740 -10.81291 -10.72842 -9.22585 -8.35010 -8.33877 -6.41709 0.56791 0.69094 1.35828 1.37174 1.50267 2.11776 2.33198 2.57348 2.96069 2.99730 3.02800 3.68266 3.79852 3.98146 4.00684 4.05865 4.23844 4.24065 4.29123 4.34700 4.49766 4.60174 4.65630 4.68910 4.70364 4.78901 4.90288 4.96407 5.01500 5.04447 5.09866 5.12572 5.26115 5.30216 5.31739 5.34421 5.49816 5.51625 5.64595 5.73762 6.16279 6.40295 6.58477 6.63719 6.81783 7.23296 8.80730 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035113 B = 0.002745 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.244477 B =10197.111697 C =10745.992151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.150 4.150 3 C 0.163 3.837 4 N -0.735 5.735 5 C 0.253 3.747 6 C -0.238 4.238 7 C -0.033 4.033 8 C -0.284 4.284 9 C 0.154 3.846 10 O -0.337 6.337 11 C 0.089 3.911 12 C -0.006 4.006 13 C -0.537 4.537 14 H 0.042 0.958 15 C 0.013 3.987 16 N -0.942 5.942 17 Si 0.950 3.050 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.251 1.251 21 C -0.249 4.249 22 C -0.156 4.156 23 C -0.175 4.175 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.403 0.597 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.270 0.730 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.804 -24.871 18.671 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.150 4.150 3 C 0.040 3.960 4 N -0.364 5.364 5 C 0.148 3.852 6 C -0.260 4.260 7 C -0.052 4.052 8 C -0.305 4.305 9 C 0.107 3.893 10 O -0.251 6.251 11 C 0.014 3.986 12 C -0.043 4.043 13 C -0.575 4.575 14 H 0.060 0.940 15 C -0.185 4.185 16 N -0.582 5.582 17 Si 0.772 3.228 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.175 1.175 21 C -0.273 4.273 22 C -0.194 4.194 23 C -0.212 4.212 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.239 0.761 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.827 -24.885 18.580 31.798 hybrid contribution -0.013 0.375 -1.136 1.197 sum -6.840 -24.510 17.444 30.852 Atomic orbital electron populations 1.21304 0.91208 1.02416 1.02032 1.21647 0.95493 0.90078 1.07801 1.20880 0.99688 0.92352 0.83123 1.44659 1.70310 1.11865 1.09584 1.17438 0.90500 0.85504 0.91804 1.20739 1.10873 0.95737 0.98663 1.20947 0.93880 0.94814 0.95533 1.21216 1.13389 1.01760 0.94091 1.19080 0.93587 0.93053 0.83541 1.85999 1.80125 1.32434 1.26513 1.22644 0.97922 0.79324 0.98699 1.19449 0.97515 0.95189 0.92196 1.21110 1.43236 0.98389 0.94718 0.94007 1.25889 0.94562 0.95770 1.02297 1.70025 1.47812 1.15519 1.24807 0.85666 0.79052 0.80045 0.77991 1.18919 1.20356 1.17492 1.19760 1.15334 0.95282 0.96912 1.23136 1.02342 0.99656 0.94226 1.23054 1.02357 1.00680 0.95124 0.92748 0.91528 0.91800 0.92017 0.91279 0.76126 0.83928 0.83573 0.86405 0.92499 0.92539 0.95455 0.95541 0.92078 0.85612 0.88130 0.87432 0.88027 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.72 71.98 0.70 -0.45 16 2 C -0.15 -1.61 2.13 -52.18 -0.11 -1.72 16 3 C 0.16 2.19 4.86 86.38 0.42 2.61 16 4 N -0.74 -13.16 5.69 -339.47 -1.93 -15.10 16 5 C 0.25 6.18 6.65 38.20 0.25 6.43 16 6 C -0.24 -5.46 9.29 22.42 0.21 -5.25 16 7 C -0.03 -0.85 10.03 22.23 0.22 -0.62 16 8 C -0.28 -9.20 9.04 22.39 0.20 -9.00 16 9 C 0.15 5.48 6.68 22.49 0.15 5.63 16 10 O -0.34 -13.91 10.13 -92.39 -0.94 -14.84 16 11 C 0.09 3.86 4.68 71.98 0.34 4.20 16 12 C -0.01 -0.30 4.41 29.85 0.13 -0.17 16 13 C -0.54 -31.43 9.66 25.60 0.25 -31.18 16 14 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 15 C 0.01 0.76 5.47 84.66 0.46 1.23 16 16 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 17 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 21 C -0.25 -7.54 9.83 22.49 0.22 -7.32 16 22 C -0.16 -1.36 9.87 30.59 0.30 -1.06 16 23 C -0.18 -1.82 9.85 30.59 0.30 -1.51 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.56 8.10 -2.39 -0.02 0.54 16 26 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.06 0.81 7.92 -2.38 -0.02 0.79 16 28 H 0.07 0.92 7.69 -2.39 -0.02 0.90 16 29 H 0.40 6.65 8.42 -92.71 -0.78 5.87 16 30 H 0.14 2.47 6.71 -2.91 -0.02 2.45 16 31 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.12 3.94 6.29 -2.91 -0.02 3.92 16 33 H 0.06 2.43 7.65 -2.38 -0.02 2.41 16 34 H 0.06 2.41 7.67 -2.39 -0.02 2.40 16 35 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 36 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 38 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.10 0.81 8.08 -2.38 -0.02 0.79 16 40 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -66.88 346.59 3.53 -63.35 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.16 Total: 16.60 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 4.05 Total: -38.18 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -1.63 Total: -73.67 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.94 Total: -14.84 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -66.88 3.53 -63.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564394722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.146 kcal (2) G-P(sol) polarization free energy of solvation -66.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds