Wall clock time and date at job start Mon Mar 30 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.39673 * 119.99605 * 180.02562 * 10 9 7 12 12 C 1.38914 * 120.07707 * 359.72057 * 11 10 9 13 13 C 1.38106 * 119.92380 * 179.76726 * 12 11 10 14 14 C 1.38287 * 120.07267 * 0.51577 * 13 12 11 15 15 C 1.50701 * 119.92365 * 179.72214 * 14 13 12 16 16 O 1.42899 * 109.46992 * 270.02183 * 15 14 13 17 17 C 1.42902 * 114.00175 * 180.02562 * 16 15 14 18 18 C 1.54264 * 110.03090 * 267.90338 * 17 16 15 19 19 C 1.54962 * 104.16162 * 217.13264 * 18 17 16 20 20 C 1.54887 * 102.77533 * 37.89163 * 19 18 17 21 21 C 1.53878 * 110.03266 * 150.68718 * 17 16 15 22 22 C 1.38283 * 120.15072 * 359.74237 * 14 13 12 23 23 C 1.38101 * 120.07597 * 359.97438 * 22 14 13 24 24 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 26 26 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 27 27 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 28 28 H 1.07998 * 120.03713 * 0.02562 * 12 11 10 29 29 H 1.07994 * 119.96460 * 180.25714 * 13 12 11 30 30 H 1.08994 * 109.47299 * 30.02087 * 15 14 13 31 31 H 1.09002 * 109.47442 * 150.02258 * 15 14 13 32 32 H 1.09002 * 110.01627 * 29.29650 * 17 16 15 33 33 H 1.09003 * 110.48600 * 335.78612 * 18 17 16 34 34 H 1.09005 * 110.48359 * 98.42338 * 18 17 16 35 35 H 1.08997 * 110.72058 * 279.57851 * 19 18 17 36 36 H 1.09002 * 110.92102 * 156.29558 * 19 18 17 37 37 H 1.09001 * 110.48676 * 203.40411 * 20 19 18 38 38 H 1.09000 * 110.59997 * 80.81637 * 20 19 18 39 39 H 1.09000 * 110.03257 * 238.56994 * 21 17 16 40 40 H 1.09002 * 110.03324 * 0.02562 * 21 17 16 41 41 H 1.08009 * 119.96012 * 179.97438 * 22 14 13 42 42 H 1.08005 * 120.03673 * 179.97438 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7378 -4.9294 0.0000 12 6 0.3724 -5.1851 0.0053 13 6 -0.0844 -6.4884 -0.0001 14 6 0.8157 -7.5383 0.0000 15 6 0.3135 -8.9591 0.0004 16 8 0.1545 -9.4077 1.3478 17 6 -0.3197 -10.7510 1.4611 18 6 -1.8594 -10.7616 1.5552 19 6 -2.1702 -11.9029 2.5564 20 6 -1.0333 -11.7629 3.5990 21 6 0.2056 -11.3877 2.7598 22 6 2.1756 -7.2872 0.0001 23 6 2.6392 -5.9864 -0.0004 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6243 -2.5567 0.8903 27 1 3.1570 -3.4352 0.0009 28 1 -0.3310 -4.3657 0.0095 29 1 -1.1458 -6.6880 -0.0002 30 1 -0.6466 -9.0053 -0.5135 31 1 1.0316 -9.5985 -0.5131 32 1 0.0059 -11.3354 0.6005 33 1 -2.2248 -9.8086 1.9378 34 1 -2.2996 -10.9768 0.5815 35 1 -2.1235 -12.8731 2.0618 36 1 -3.1436 -11.7559 3.0243 37 1 -0.8715 -12.7086 4.1162 38 1 -1.2635 -10.9728 4.3137 39 1 0.7853 -12.2815 2.5295 40 1 0.8218 -10.6719 3.3039 41 1 2.8759 -8.1095 0.0005 42 1 3.7014 -5.7911 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572236697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:43 Heat of formation + Delta-G solvation = -43.610860 kcal Electronic energy + Delta-G solvation = -20105.264314 eV Core-core repulsion = 17048.899437 eV Total energy + Delta-G solvation = -3056.364877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.30610 -38.60348 -36.16607 -34.84565 -32.69385 -30.45739 -30.10023 -28.91215 -27.83871 -26.80314 -24.45552 -23.05678 -21.59710 -20.92611 -20.46505 -20.16360 -17.33941 -17.01231 -16.15661 -15.78380 -15.50816 -15.04635 -14.85222 -14.43407 -14.00709 -13.54443 -13.52560 -13.24554 -12.92074 -12.85856 -12.53689 -12.20049 -12.03724 -11.74765 -11.50815 -11.33217 -11.28176 -10.98650 -10.96183 -10.83493 -10.78024 -10.60566 -10.45509 -10.11834 -9.45999 -9.38784 -9.38221 -8.55704 -8.38493 -6.55534 -6.22357 -4.27639 2.00176 2.06361 3.21065 3.28561 3.32089 3.81463 4.24386 4.38552 4.41010 4.53201 4.57250 4.75643 5.05315 5.14922 5.17752 5.23810 5.28230 5.32516 5.42636 5.46705 5.53323 5.57952 5.59617 5.66951 5.73952 5.82084 5.95072 5.98605 6.02529 6.11860 6.23279 6.36073 6.54951 6.89739 6.97643 7.12190 7.17386 7.36600 7.41243 7.46353 7.65800 7.93385 8.27666 8.65515 8.88906 9.38875 10.88327 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036848 B = 0.002667 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.700765 B =10496.354694 C =10807.538409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.728 5.728 11 C 0.241 3.759 12 C -0.206 4.206 13 C -0.046 4.046 14 C -0.182 4.182 15 C 0.119 3.881 16 O -0.374 6.374 17 C 0.082 3.918 18 C -0.148 4.148 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.049 4.049 23 C -0.221 4.221 24 H 0.265 0.735 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.391 0.609 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -22.422 2.225 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.349 5.349 11 C 0.130 3.870 12 C -0.229 4.229 13 C -0.065 4.065 14 C -0.185 4.185 15 C 0.043 3.957 16 O -0.294 6.294 17 C 0.024 3.976 18 C -0.186 4.186 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.068 4.068 23 C -0.244 4.244 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.225 0.775 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.693 -21.950 2.378 22.143 hybrid contribution 0.668 0.927 -0.249 1.169 sum -1.026 -21.022 2.128 21.155 Atomic orbital electron populations 1.69952 1.06081 1.27264 1.49350 1.24937 0.94948 0.99489 0.94654 0.86351 0.79893 0.82874 0.77773 1.19648 1.20756 1.20748 1.21238 0.93400 0.90423 1.52669 0.91924 1.19133 0.88693 0.82677 0.96673 1.45570 1.09620 1.02568 1.77190 1.18118 0.92891 0.85595 0.90370 1.20724 0.94133 0.97014 1.11036 1.20656 0.98414 0.91755 0.95709 1.19036 0.93505 0.93029 1.12925 1.21166 0.98620 0.92534 0.83367 1.88107 1.86399 1.28065 1.26780 1.22749 0.93050 0.84086 0.97729 1.22931 0.96264 0.99904 0.99521 1.22438 0.98624 0.98329 0.96724 1.22333 0.94762 1.01285 0.97710 1.22229 0.98135 1.00180 0.95635 1.20543 0.94348 0.95578 0.96297 1.20488 0.98379 0.91935 1.13631 0.92491 0.96099 0.96079 0.77529 0.85703 0.86972 0.93421 0.93515 0.92295 0.90277 0.91708 0.91623 0.91448 0.91698 0.91311 0.91324 0.90257 0.87144 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 8 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 9 C 0.25 6.39 4.67 -5.19 -0.02 6.36 16 10 N -0.73 -15.71 5.73 -59.80 -0.34 -16.05 16 11 C 0.24 4.77 6.65 -83.79 -0.56 4.21 16 12 C -0.21 -4.01 9.31 -39.38 -0.37 -4.38 16 13 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 14 C -0.18 -2.86 5.51 -104.59 -0.58 -3.44 16 15 C 0.12 1.54 5.90 36.01 0.21 1.75 16 16 O -0.37 -5.12 9.88 -35.23 -0.35 -5.47 16 17 C 0.08 0.85 3.38 -25.61 -0.09 0.77 16 18 C -0.15 -1.39 6.56 -25.03 -0.16 -1.56 16 19 C -0.12 -0.96 6.91 -24.70 -0.17 -1.13 16 20 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 21 C -0.12 -1.15 6.61 -25.61 -0.17 -1.32 16 22 C -0.05 -0.76 9.69 -39.62 -0.38 -1.15 16 23 C -0.22 -3.80 9.90 -39.38 -0.39 -4.19 16 24 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.02 0.58 7.96 -51.93 -0.41 0.16 16 26 H 0.02 0.58 7.94 -51.93 -0.41 0.17 16 27 H 0.39 7.83 8.33 -40.82 -0.34 7.49 16 28 H 0.13 2.58 6.73 -52.49 -0.35 2.22 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.05 0.53 8.04 -51.93 -0.42 0.11 16 32 H 0.06 0.54 7.81 -51.93 -0.41 0.14 16 33 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.84 7.96 -51.93 -0.41 0.42 16 41 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -29.12 345.96 -10.34 -39.47 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.93 Total: 5.58 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -3.65 Total: -19.75 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.39 Total: -40.95 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.35 Total: -5.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.12 -10.34 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572236697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.143 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds