Wall clock time and date at job start Mon Mar 30 2020 01:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.39673 * 119.99605 * 180.02562 * 10 9 7 12 12 C 1.38914 * 120.07707 * 359.72057 * 11 10 9 13 13 C 1.38106 * 119.92380 * 179.76726 * 12 11 10 14 14 C 1.38287 * 120.07267 * 0.51577 * 13 12 11 15 15 C 1.50701 * 119.92365 * 179.72214 * 14 13 12 16 16 O 1.42899 * 109.46992 * 270.02183 * 15 14 13 17 17 C 1.42902 * 114.00175 * 180.02562 * 16 15 14 18 18 C 1.54264 * 110.03090 * 267.90338 * 17 16 15 19 19 C 1.54962 * 104.16162 * 217.13264 * 18 17 16 20 20 C 1.54887 * 102.77533 * 37.89163 * 19 18 17 21 21 C 1.53878 * 110.03266 * 150.68718 * 17 16 15 22 22 C 1.38283 * 120.15072 * 359.74237 * 14 13 12 23 23 C 1.38101 * 120.07597 * 359.97438 * 22 14 13 24 24 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 26 26 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 27 27 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 28 28 H 1.07998 * 120.03713 * 0.02562 * 12 11 10 29 29 H 1.07994 * 119.96460 * 180.25714 * 13 12 11 30 30 H 1.08994 * 109.47299 * 30.02087 * 15 14 13 31 31 H 1.09002 * 109.47442 * 150.02258 * 15 14 13 32 32 H 1.09002 * 110.01627 * 29.29650 * 17 16 15 33 33 H 1.09003 * 110.48600 * 335.78612 * 18 17 16 34 34 H 1.09005 * 110.48359 * 98.42338 * 18 17 16 35 35 H 1.08997 * 110.72058 * 279.57851 * 19 18 17 36 36 H 1.09002 * 110.92102 * 156.29558 * 19 18 17 37 37 H 1.09001 * 110.48676 * 203.40411 * 20 19 18 38 38 H 1.09000 * 110.59997 * 80.81637 * 20 19 18 39 39 H 1.09000 * 110.03257 * 238.56994 * 21 17 16 40 40 H 1.09002 * 110.03324 * 0.02562 * 21 17 16 41 41 H 1.08009 * 119.96012 * 179.97438 * 22 14 13 42 42 H 1.08005 * 120.03673 * 179.97438 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7378 -4.9294 0.0000 12 6 0.3724 -5.1851 0.0053 13 6 -0.0844 -6.4884 -0.0001 14 6 0.8157 -7.5383 0.0000 15 6 0.3135 -8.9591 0.0004 16 8 0.1545 -9.4077 1.3478 17 6 -0.3197 -10.7510 1.4611 18 6 -1.8594 -10.7616 1.5552 19 6 -2.1702 -11.9029 2.5564 20 6 -1.0333 -11.7629 3.5990 21 6 0.2056 -11.3877 2.7598 22 6 2.1756 -7.2872 0.0001 23 6 2.6392 -5.9864 -0.0004 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6243 -2.5567 0.8903 27 1 3.1570 -3.4352 0.0009 28 1 -0.3310 -4.3657 0.0095 29 1 -1.1458 -6.6880 -0.0002 30 1 -0.6466 -9.0053 -0.5135 31 1 1.0316 -9.5985 -0.5131 32 1 0.0059 -11.3354 0.6005 33 1 -2.2248 -9.8086 1.9378 34 1 -2.2996 -10.9768 0.5815 35 1 -2.1235 -12.8731 2.0618 36 1 -3.1436 -11.7559 3.0243 37 1 -0.8715 -12.7086 4.1162 38 1 -1.2635 -10.9728 4.3137 39 1 0.7853 -12.2815 2.5295 40 1 0.8218 -10.6719 3.3039 41 1 2.8759 -8.1095 0.0005 42 1 3.7014 -5.7911 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572236697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:42 Heat of formation + Delta-G solvation = -59.256827 kcal Electronic energy + Delta-G solvation = -20105.942774 eV Core-core repulsion = 17048.899437 eV Total energy + Delta-G solvation = -3057.043337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50071 -39.65372 -37.28570 -36.29629 -34.64145 -31.88153 -31.52772 -29.61359 -29.09758 -28.14697 -25.87072 -24.78259 -23.11441 -21.70166 -21.58680 -21.13866 -19.15959 -17.96727 -17.58054 -17.10630 -16.89421 -16.38787 -15.97878 -15.63975 -15.23220 -15.05089 -14.88753 -14.42311 -14.22454 -14.19381 -13.96413 -13.67736 -13.44617 -13.01209 -12.78229 -12.72922 -12.36126 -12.24813 -11.99257 -11.95580 -11.87423 -11.69755 -11.47205 -11.43909 -11.41914 -11.04801 -10.55273 -10.35287 -9.77699 -8.33100 -8.15902 -6.47357 0.60560 0.68251 1.39521 1.39985 1.53452 2.32330 2.73833 2.88813 3.02012 3.28833 3.70446 3.73107 3.99590 4.04037 4.13779 4.24659 4.36380 4.39523 4.53954 4.57562 4.61853 4.62676 4.79815 4.83457 4.83739 4.87918 5.00503 5.06261 5.06623 5.19654 5.21207 5.25544 5.26221 5.32842 5.47774 5.48484 5.53897 5.57199 5.81609 5.84918 6.12339 6.45539 6.48150 6.72406 7.13370 7.26957 8.79105 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036848 B = 0.002667 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.700765 B =10496.354694 C =10807.538409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.272 3.728 10 N -0.735 5.735 11 C 0.211 3.789 12 C -0.229 4.229 13 C -0.052 4.052 14 C -0.173 4.173 15 C 0.120 3.880 16 O -0.399 6.399 17 C 0.075 3.925 18 C -0.150 4.150 19 C -0.119 4.119 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.047 4.047 23 C -0.215 4.215 24 H 0.269 0.731 25 H -0.009 1.009 26 H -0.011 1.011 27 H 0.398 0.602 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.146 0.854 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -24.649 2.063 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.090 0.910 9 C 0.149 3.851 10 N -0.360 5.360 11 C 0.104 3.896 12 C -0.253 4.253 13 C -0.070 4.070 14 C -0.175 4.175 15 C 0.044 3.956 16 O -0.319 6.319 17 C 0.018 3.982 18 C -0.188 4.188 19 C -0.157 4.157 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.065 4.065 23 C -0.237 4.237 24 H 0.078 0.922 25 H 0.008 0.992 26 H 0.007 0.993 27 H 0.233 0.767 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.164 0.836 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.398 -24.237 2.218 24.342 hybrid contribution 0.203 1.412 -0.181 1.438 sum -0.195 -22.825 2.036 22.917 Atomic orbital electron populations 1.70086 1.07892 1.28489 1.50112 1.25959 0.95849 1.03538 0.93909 0.85178 0.78849 0.77709 0.77908 1.18418 1.20125 1.20211 1.21619 0.94005 0.91233 1.52698 0.91033 1.18556 0.88722 0.84101 0.93711 1.45185 1.09065 1.02423 1.79362 1.18383 0.93528 0.85450 0.92265 1.20718 0.94034 0.97607 1.12907 1.20864 0.99758 0.91013 0.95392 1.19474 0.93551 0.94400 1.10123 1.21193 0.99858 0.90859 0.83664 1.88062 1.86857 1.30052 1.26941 1.23005 0.93539 0.82764 0.98929 1.22932 0.95778 0.99608 1.00499 1.22445 0.98646 0.98387 0.96194 1.22349 0.94470 1.01719 0.97605 1.22268 0.98501 1.00358 0.95127 1.20967 0.95007 0.95827 0.94739 1.20760 0.99025 0.91748 1.12207 0.92166 0.99153 0.99350 0.76739 0.88473 0.85413 0.92281 0.91088 0.90555 0.92344 0.90665 0.90010 0.91019 0.89994 0.92528 0.89468 0.92062 0.83624 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.98 43.21 29.54 68.60 2.03 45.24 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.56 -31.23 9.28 25.60 0.24 -30.99 16 8 H 0.07 3.78 7.60 -2.91 -0.02 3.76 16 9 C 0.27 14.82 4.67 85.63 0.40 15.22 16 10 N -0.73 -33.09 5.73 -343.11 -1.96 -35.05 16 11 C 0.21 8.58 6.65 38.22 0.25 8.84 16 12 C -0.23 -9.43 9.31 22.40 0.21 -9.22 16 13 C -0.05 -1.75 9.69 22.25 0.22 -1.53 16 14 C -0.17 -5.12 5.51 -19.84 -0.11 -5.23 16 15 C 0.12 2.76 5.90 71.24 0.42 3.18 16 16 O -0.40 -10.11 9.88 -148.98 -1.47 -11.58 16 17 C 0.08 1.38 3.38 31.32 0.11 1.48 16 18 C -0.15 -2.54 6.56 31.69 0.21 -2.34 16 19 C -0.12 -1.57 6.91 31.91 0.22 -1.35 16 20 C -0.12 -1.76 6.83 31.67 0.22 -1.55 16 21 C -0.13 -2.05 6.61 31.32 0.21 -1.84 16 22 C -0.05 -1.34 9.69 22.25 0.22 -1.13 16 23 C -0.21 -7.11 9.90 22.40 0.22 -6.89 16 24 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 25 H -0.01 -0.55 7.96 -2.38 -0.02 -0.57 16 26 H -0.01 -0.67 7.94 -2.39 -0.02 -0.69 16 27 H 0.40 16.31 8.33 -92.71 -0.77 15.54 16 28 H 0.10 4.44 6.73 -2.91 -0.02 4.42 16 29 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 31 H 0.07 1.31 8.04 -2.39 -0.02 1.30 16 32 H 0.08 1.13 7.81 -2.39 -0.02 1.12 16 33 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 34 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.22 7.96 -2.39 -0.02 1.20 16 41 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 42 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -64.92 345.96 2.57 -62.35 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.22 Total: 26.52 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 3.48 Total: -32.48 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -1.68 Total: -90.05 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.47 Total: -11.58 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -64.92 2.57 -62.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572236697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.089 kcal (2) G-P(sol) polarization free energy of solvation -64.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds