Wall clock time and date at job start Mon Mar 30 2020 01:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00144 * 2 1 4 4 H 1.48505 * 109.47274 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47353 * 300.00136 * 3 2 1 6 6 H 1.48504 * 109.47211 * 60.00228 * 3 2 1 7 7 C 1.37872 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99690 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00312 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99850 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47177 * 180.02562 * 11 10 9 13 13 C 1.38272 * 119.94269 * 89.99613 * 12 11 10 14 14 C 1.38149 * 120.05386 * 179.97438 * 13 12 11 15 15 C 1.38734 * 119.94380 * 0.02562 * 14 13 12 16 16 O 1.35893 * 120.05259 * 179.97438 * 15 14 13 17 17 C 1.42909 * 116.99653 * 185.45758 * 16 15 14 18 18 C 1.55234 * 110.57862 * 271.03704 * 17 16 15 19 19 C 1.54891 * 102.58958 * 203.34277 * 18 17 16 20 20 C 1.54262 * 104.30986 * 37.92750 * 19 18 17 21 21 C 1.53870 * 106.60458 * 336.32638 * 20 19 18 22 22 C 1.38734 * 119.88855 * 0.27059 * 15 14 13 23 23 C 1.38151 * 119.94145 * 359.42375 * 22 15 14 24 24 H 0.97005 * 119.99498 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47050 * 60.00405 * 9 7 2 26 26 H 1.09001 * 109.47325 * 300.00237 * 9 7 2 27 27 H 1.00903 * 111.00051 * 56.05045 * 10 9 7 28 28 H 1.08996 * 109.47453 * 59.99864 * 11 10 9 29 29 H 1.09007 * 109.47012 * 300.00174 * 11 10 9 30 30 H 1.07994 * 119.97404 * 0.02714 * 13 12 11 31 31 H 1.07996 * 120.02545 * 179.97438 * 14 13 12 32 32 H 1.08999 * 110.43498 * 33.62231 * 17 16 15 33 33 H 1.08999 * 110.89978 * 85.04724 * 18 17 16 34 34 H 1.09002 * 110.76619 * 321.57101 * 18 17 16 35 35 H 1.09004 * 110.48387 * 279.18725 * 19 18 17 36 36 H 1.08996 * 110.49085 * 156.67887 * 19 18 17 37 37 H 1.09003 * 110.02840 * 95.62028 * 20 19 18 38 38 H 1.09007 * 110.03371 * 216.99071 * 20 19 18 39 39 H 1.09001 * 110.02874 * 119.28080 * 21 20 19 40 40 H 1.08995 * 110.03502 * 240.66397 * 21 20 19 41 41 H 1.08000 * 120.02836 * 179.72263 * 22 15 14 42 42 H 1.08001 * 119.96954 * 180.27622 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5051 -4.9071 -0.0011 12 6 2.5146 -6.0260 -0.0005 13 6 2.9761 -6.5385 1.1980 14 6 3.9011 -7.5646 1.2012 15 6 4.3673 -8.0805 0.0007 16 8 5.2776 -9.0895 0.0014 17 6 5.8029 -9.4900 -1.2658 18 6 4.9148 -10.5937 -1.9005 19 6 5.8948 -11.2995 -2.8703 20 6 7.2375 -11.3151 -2.1110 21 6 7.1792 -10.1647 -1.0909 22 6 3.9073 -7.5603 -1.2003 23 6 2.9776 -6.5385 -1.1982 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.8403 -3.5487 0.7809 28 1 0.8805 -4.9813 -0.8913 29 1 0.8799 -4.9817 0.8886 30 1 2.6125 -6.1369 2.1322 31 1 4.2615 -7.9642 2.1376 32 1 5.8807 -8.6323 -1.9339 33 1 4.0799 -10.1547 -2.4467 34 1 4.5577 -11.2876 -1.1395 35 1 5.9875 -10.7340 -3.7975 36 1 5.5613 -12.3165 -3.0766 37 1 7.3631 -12.2666 -1.5942 38 1 8.0618 -11.1569 -2.8066 39 1 7.2764 -10.5578 -0.0789 40 1 7.9754 -9.4477 -1.2907 41 1 4.2721 -7.9572 -2.1362 42 1 2.6158 -6.1363 -2.1330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574983085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:07 Heat of formation + Delta-G solvation = -31.062582 kcal Electronic energy + Delta-G solvation = -20187.466992 eV Core-core repulsion = 17131.646248 eV Total energy + Delta-G solvation = -3055.820743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36779 -38.44881 -36.59419 -34.93186 -32.51636 -30.94369 -30.26258 -29.09040 -28.23783 -26.62680 -24.05373 -22.92143 -21.55844 -21.21103 -20.79808 -20.18262 -18.42725 -16.56374 -16.33669 -15.77879 -15.43012 -15.10689 -14.62176 -14.60857 -14.18227 -13.83372 -13.70638 -13.45127 -13.23712 -13.00461 -12.53083 -12.43782 -11.93934 -11.60883 -11.59522 -11.49388 -11.37310 -11.15551 -10.99601 -10.86463 -10.74765 -10.62714 -10.52216 -10.50282 -9.90962 -9.17287 -8.83523 -8.48180 -7.94488 -7.26765 -6.02741 -4.04517 1.50476 1.60004 3.11927 3.31687 3.38812 3.44432 3.91197 4.16852 4.22525 4.44717 4.51747 4.80342 4.94559 5.03238 5.05806 5.08316 5.16728 5.19578 5.25523 5.33259 5.44115 5.48332 5.52536 5.56881 5.62680 5.66557 5.76063 5.81358 5.89391 5.92893 5.99403 6.24746 6.25064 6.44579 6.52962 6.92859 6.92973 7.25020 7.42237 7.50011 7.79517 8.12918 8.40256 8.61554 9.05179 9.60441 11.08406 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034159 B = 0.002699 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.503636 B =10372.940340 C =10585.821966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.685 5.685 11 C 0.097 3.903 12 C -0.102 4.102 13 C -0.077 4.077 14 C -0.154 4.154 15 C 0.119 3.881 16 O -0.311 6.311 17 C 0.078 3.922 18 C -0.147 4.147 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.210 4.210 23 C -0.060 4.060 24 H 0.261 0.739 25 H 0.028 0.972 26 H -0.013 1.013 27 H 0.330 0.670 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.162 -23.328 -2.907 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.315 5.315 11 C -0.032 4.032 12 C -0.103 4.103 13 C -0.096 4.096 14 C -0.172 4.172 15 C 0.074 3.926 16 O -0.225 6.225 17 C 0.021 3.979 18 C -0.185 4.185 19 C -0.162 4.162 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.228 4.228 23 C -0.079 4.079 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.005 0.995 27 H 0.146 0.854 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.142 0.858 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.163 -23.293 -3.440 26.058 hybrid contribution -0.015 1.008 0.669 1.210 sum 11.148 -22.285 -2.771 25.071 Atomic orbital electron populations 1.69977 1.06080 1.26671 1.51067 1.24997 0.94893 0.99398 0.95378 0.86422 0.80083 0.83298 0.77493 1.19640 1.20996 1.21088 1.21225 0.93577 0.90193 1.50112 0.91901 1.19590 0.90624 0.87355 0.95826 1.60729 1.21057 1.00634 1.49110 1.20825 0.93267 0.88603 1.00490 1.19956 0.99736 0.97840 0.92746 1.20900 0.95665 0.94977 0.98052 1.20332 1.01296 0.99640 0.95970 1.18934 0.90682 0.88764 0.94221 1.86075 1.55226 1.49458 1.31719 1.23403 0.93532 0.96831 0.84090 1.23092 0.98186 0.98079 0.99132 1.22282 0.94808 1.00934 0.98172 1.22086 0.97827 0.98382 0.97654 1.22162 0.95040 0.97760 1.00885 1.21212 1.02940 1.01896 0.96764 1.20859 0.94817 0.94008 0.98201 0.92973 0.95362 0.99545 0.85390 0.91031 0.95495 0.85640 0.85685 0.90151 0.90843 0.90282 0.91278 0.91161 0.91377 0.91370 0.90286 0.90846 0.85799 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.73 9.32 -34.44 -0.32 -15.05 16 8 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 9 C 0.19 5.12 5.44 -4.97 -0.03 5.09 16 10 N -0.68 -15.06 6.48 -116.33 -0.75 -15.82 16 11 C 0.10 1.78 5.81 -4.97 -0.03 1.75 16 12 C -0.10 -1.62 5.39 -104.60 -0.56 -2.19 16 13 C -0.08 -1.12 9.69 -39.60 -0.38 -1.50 16 14 C -0.15 -2.10 9.99 -39.43 -0.39 -2.49 16 15 C 0.12 1.61 6.66 -39.21 -0.26 1.35 16 16 O -0.31 -3.88 9.86 -19.40 -0.19 -4.07 16 17 C 0.08 0.75 2.68 -24.89 -0.07 0.68 16 18 C -0.15 -1.22 6.41 -24.55 -0.16 -1.38 16 19 C -0.12 -0.80 6.82 -25.07 -0.17 -0.97 16 20 C -0.12 -0.76 6.80 -25.62 -0.17 -0.93 16 21 C -0.12 -0.95 6.56 -25.62 -0.17 -1.12 16 22 C -0.21 -2.78 8.85 -39.43 -0.35 -3.12 16 23 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 27 H 0.33 7.02 8.72 -39.29 -0.34 6.68 16 28 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 29 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.08 0.77 6.27 -51.93 -0.33 0.44 16 33 H 0.07 0.61 7.63 -51.93 -0.40 0.21 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.12 1.38 5.49 -52.49 -0.29 1.09 16 42 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -30.91 343.83 -10.40 -41.31 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.81 Total: 2.51 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -3.55 Total: -19.67 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.02 Total: -42.14 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.19 Total: -4.07 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.91 -10.40 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574983085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.249 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds