Wall clock time and date at job start Mon Mar 30 2020 01:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00144 * 2 1 4 4 H 1.48505 * 109.47274 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47353 * 300.00136 * 3 2 1 6 6 H 1.48504 * 109.47211 * 60.00228 * 3 2 1 7 7 C 1.37872 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99690 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00312 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99850 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47177 * 180.02562 * 11 10 9 13 13 C 1.38272 * 119.94269 * 89.99613 * 12 11 10 14 14 C 1.38149 * 120.05386 * 179.97438 * 13 12 11 15 15 C 1.38734 * 119.94380 * 0.02562 * 14 13 12 16 16 O 1.35893 * 120.05259 * 179.97438 * 15 14 13 17 17 C 1.42909 * 116.99653 * 185.45758 * 16 15 14 18 18 C 1.55234 * 110.57862 * 271.03704 * 17 16 15 19 19 C 1.54891 * 102.58958 * 203.34277 * 18 17 16 20 20 C 1.54262 * 104.30986 * 37.92750 * 19 18 17 21 21 C 1.53870 * 106.60458 * 336.32638 * 20 19 18 22 22 C 1.38734 * 119.88855 * 0.27059 * 15 14 13 23 23 C 1.38151 * 119.94145 * 359.42375 * 22 15 14 24 24 H 0.97005 * 119.99498 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47050 * 60.00405 * 9 7 2 26 26 H 1.09001 * 109.47325 * 300.00237 * 9 7 2 27 27 H 1.00903 * 111.00051 * 56.05045 * 10 9 7 28 28 H 1.08996 * 109.47453 * 59.99864 * 11 10 9 29 29 H 1.09007 * 109.47012 * 300.00174 * 11 10 9 30 30 H 1.07994 * 119.97404 * 0.02714 * 13 12 11 31 31 H 1.07996 * 120.02545 * 179.97438 * 14 13 12 32 32 H 1.08999 * 110.43498 * 33.62231 * 17 16 15 33 33 H 1.08999 * 110.89978 * 85.04724 * 18 17 16 34 34 H 1.09002 * 110.76619 * 321.57101 * 18 17 16 35 35 H 1.09004 * 110.48387 * 279.18725 * 19 18 17 36 36 H 1.08996 * 110.49085 * 156.67887 * 19 18 17 37 37 H 1.09003 * 110.02840 * 95.62028 * 20 19 18 38 38 H 1.09007 * 110.03371 * 216.99071 * 20 19 18 39 39 H 1.09001 * 110.02874 * 119.28080 * 21 20 19 40 40 H 1.08995 * 110.03502 * 240.66397 * 21 20 19 41 41 H 1.08000 * 120.02836 * 179.72263 * 22 15 14 42 42 H 1.08001 * 119.96954 * 180.27622 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5051 -4.9071 -0.0011 12 6 2.5146 -6.0260 -0.0005 13 6 2.9761 -6.5385 1.1980 14 6 3.9011 -7.5646 1.2012 15 6 4.3673 -8.0805 0.0007 16 8 5.2776 -9.0895 0.0014 17 6 5.8029 -9.4900 -1.2658 18 6 4.9148 -10.5937 -1.9005 19 6 5.8948 -11.2995 -2.8703 20 6 7.2375 -11.3151 -2.1110 21 6 7.1792 -10.1647 -1.0909 22 6 3.9073 -7.5603 -1.2003 23 6 2.9776 -6.5385 -1.1982 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.8403 -3.5487 0.7809 28 1 0.8805 -4.9813 -0.8913 29 1 0.8799 -4.9817 0.8886 30 1 2.6125 -6.1369 2.1322 31 1 4.2615 -7.9642 2.1376 32 1 5.8807 -8.6323 -1.9339 33 1 4.0799 -10.1547 -2.4467 34 1 4.5577 -11.2876 -1.1395 35 1 5.9875 -10.7340 -3.7975 36 1 5.5613 -12.3165 -3.0766 37 1 7.3631 -12.2666 -1.5942 38 1 8.0618 -11.1569 -2.8066 39 1 7.2764 -10.5578 -0.0789 40 1 7.9754 -9.4477 -1.2907 41 1 4.2721 -7.9572 -2.1362 42 1 2.6158 -6.1363 -2.1330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574983085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:06 Heat of formation + Delta-G solvation = -48.727683 kcal Electronic energy + Delta-G solvation = -20188.233008 eV Core-core repulsion = 17131.646248 eV Total energy + Delta-G solvation = -3056.586759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32973 -39.43062 -37.54757 -36.55777 -34.55327 -32.03543 -31.66918 -29.70906 -29.12751 -28.32696 -25.64995 -23.96440 -23.45295 -22.34529 -21.50818 -20.98320 -19.37159 -18.63903 -17.22730 -16.97775 -16.54654 -16.42561 -16.02375 -15.87233 -15.25500 -15.21818 -14.99220 -14.52722 -14.34349 -14.23179 -13.90845 -13.48005 -13.25942 -13.07489 -13.01932 -12.66946 -12.59896 -12.27095 -12.13957 -12.08630 -11.99438 -11.92124 -11.50659 -11.47000 -11.30811 -11.23840 -10.67623 -9.93265 -9.21592 -8.97141 -8.23090 -6.34438 0.40478 0.45547 1.41159 1.41841 1.56036 2.23434 2.39926 2.77929 3.10009 3.54489 3.61329 3.73893 3.85327 3.90244 3.97834 4.03364 4.21959 4.35437 4.44320 4.45554 4.49924 4.52623 4.64344 4.72298 4.74238 4.80996 4.88267 5.03988 5.06542 5.12135 5.12393 5.20433 5.22987 5.24281 5.35639 5.41212 5.43352 5.60295 5.75116 5.83605 6.00984 6.42645 6.51776 6.69512 6.87408 7.36498 8.88542 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034159 B = 0.002699 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.503636 B =10372.940340 C =10585.821966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.684 5.684 11 C 0.102 3.898 12 C -0.121 4.121 13 C -0.078 4.078 14 C -0.159 4.159 15 C 0.120 3.880 16 O -0.319 6.319 17 C 0.067 3.933 18 C -0.146 4.146 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.207 4.207 23 C -0.068 4.068 24 H 0.266 0.734 25 H 0.002 0.998 26 H -0.037 1.037 27 H 0.334 0.666 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.019 -24.077 -3.307 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.314 5.314 11 C -0.026 4.026 12 C -0.122 4.122 13 C -0.097 4.097 14 C -0.178 4.178 15 C 0.075 3.925 16 O -0.233 6.233 17 C 0.011 3.989 18 C -0.184 4.184 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.225 4.225 23 C -0.087 4.087 24 H 0.074 0.926 25 H 0.020 0.980 26 H -0.019 1.019 27 H 0.151 0.849 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.163 0.837 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.034 -24.074 -3.841 27.644 hybrid contribution -0.568 1.111 0.785 1.474 sum 12.467 -22.962 -3.056 26.306 Atomic orbital electron populations 1.70098 1.07779 1.27982 1.51545 1.25964 0.95827 1.03417 0.94567 0.85260 0.78866 0.78197 0.77815 1.18752 1.20302 1.20189 1.21556 0.93758 0.91416 1.50569 0.91896 1.19243 0.90641 0.88786 0.93390 1.60608 1.20376 1.01058 1.49369 1.20782 0.93882 0.87668 1.00313 1.19757 1.00478 0.97989 0.93970 1.21005 0.95654 0.95107 0.97913 1.20542 1.00951 0.99336 0.96926 1.19093 0.90467 0.88681 0.94296 1.86081 1.54784 1.48876 1.33549 1.23711 0.94721 0.97353 0.83119 1.23078 0.98408 0.97641 0.99295 1.22292 0.94266 1.01390 0.97891 1.22094 0.98137 0.97936 0.97439 1.22202 0.94053 0.98361 1.01181 1.21374 1.02214 1.01198 0.97740 1.20960 0.95238 0.94531 0.97935 0.92565 0.97993 1.01922 0.84876 0.91482 0.95335 0.84696 0.84015 0.90064 0.91021 0.90974 0.90614 0.90142 0.90738 0.90123 0.90849 0.90311 0.83742 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.53 -31.12 9.32 25.60 0.24 -30.88 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.36 5.44 85.56 0.47 11.82 16 10 N -0.68 -30.63 6.48 -521.96 -3.38 -34.01 16 11 C 0.10 3.81 5.81 85.56 0.50 4.31 16 12 C -0.12 -3.83 5.39 -19.85 -0.11 -3.94 16 13 C -0.08 -2.20 9.69 22.26 0.22 -1.99 16 14 C -0.16 -4.14 9.99 22.37 0.22 -3.91 16 15 C 0.12 3.10 6.66 22.51 0.15 3.25 16 16 O -0.32 -7.49 9.86 -92.35 -0.91 -8.40 16 17 C 0.07 1.17 2.68 31.79 0.09 1.26 16 18 C -0.15 -2.18 6.41 32.01 0.21 -1.98 16 19 C -0.12 -1.27 6.82 31.67 0.22 -1.05 16 20 C -0.12 -1.19 6.80 31.32 0.21 -0.97 16 21 C -0.12 -1.67 6.56 31.32 0.21 -1.46 16 22 C -0.21 -5.22 8.85 22.37 0.20 -5.02 16 23 C -0.07 -1.97 9.69 22.25 0.22 -1.76 16 24 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 25 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 26 H -0.04 -2.15 8.14 -2.39 -0.02 -2.17 16 27 H 0.33 14.39 8.72 -89.69 -0.78 13.61 16 28 H 0.07 2.51 8.08 -2.39 -0.02 2.50 16 29 H 0.03 1.05 8.08 -2.38 -0.02 1.03 16 30 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.08 1.41 6.27 -2.39 -0.01 1.39 16 33 H 0.07 1.08 7.63 -2.39 -0.02 1.06 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.07 1.10 8.07 -2.39 -0.02 1.08 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.15 2.96 5.49 -2.91 -0.02 2.94 16 42 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -65.79 343.83 1.72 -64.08 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.21 Total: 20.05 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 3.48 Total: -31.85 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -3.10 Total: -90.70 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.91 Total: -8.40 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -65.79 1.72 -64.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574983085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.351 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds