Wall clock time and date at job start Mon Mar 30 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 120.00471 * 2 1 4 4 C 1.38227 * 120.00641 * 179.97438 * 3 2 1 5 5 C 1.38242 * 119.99820 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99842 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.48979 * 339.96478 * 6 5 4 8 8 O 1.42905 * 109.47768 * 219.94220 * 6 5 4 9 9 C 1.42902 * 114.09781 * 178.85884 * 8 6 5 10 10 C 1.53092 * 109.41432 * 61.15724 * 9 8 6 11 11 C 1.53183 * 109.16258 * 302.39270 * 10 9 8 12 12 C 1.53092 * 109.48129 * 100.00039 * 6 5 4 13 13 H 1.08995 * 109.57510 * 57.65287 * 12 6 5 14 14 N 1.46898 * 109.51924 * 297.49363 * 12 6 5 15 15 C 1.46906 * 110.99888 * 155.31453 * 14 12 6 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47092 * 90.00048 * 20 18 16 22 22 H 1.48498 * 109.47340 * 210.00299 * 20 18 16 23 23 H 1.48501 * 109.47391 * 330.00372 * 20 18 16 24 24 C 1.38231 * 119.99816 * 0.27301 * 5 4 3 25 25 C 1.38236 * 119.99929 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46786 * 90.00798 * 1 2 3 27 27 H 1.08996 * 109.47164 * 210.00128 * 1 2 3 28 28 H 1.08994 * 109.47181 * 330.00288 * 1 2 3 29 29 H 1.08004 * 119.99459 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.00422 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.48158 * 301.17610 * 9 8 6 32 32 H 1.08998 * 109.48159 * 181.13875 * 9 8 6 33 33 H 1.09004 * 109.52830 * 182.48923 * 10 9 8 34 34 H 1.08995 * 109.52677 * 62.29574 * 10 9 8 35 35 H 1.09003 * 109.54362 * 297.11295 * 11 10 9 36 36 H 1.08998 * 109.61806 * 176.89383 * 11 10 9 37 37 H 1.00902 * 111.00533 * 31.35859 * 14 12 6 38 38 H 1.09000 * 109.47033 * 300.00113 * 15 14 12 39 39 H 1.09001 * 109.46544 * 60.00058 * 15 14 12 40 40 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 41 41 H 1.07997 * 119.99827 * 179.72665 * 24 5 4 42 42 H 1.08000 * 120.00034 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7788 -0.0001 0.0028 7 1 6.1427 0.9651 -0.3494 8 8 6.2559 -1.0334 -0.8614 9 6 7.6802 -1.1050 -0.9541 10 6 8.2660 -1.3994 0.4293 11 6 7.8187 -0.3085 1.4073 12 6 6.2882 -0.2500 1.4246 13 1 5.8917 -1.1959 1.7936 14 7 5.8486 0.8425 2.3027 15 6 5.7842 0.3998 3.7020 16 6 5.3300 1.5445 4.5706 17 1 5.1115 2.5049 4.1276 18 6 5.1934 1.3657 5.9309 19 7 5.4599 0.1962 6.4704 20 14 4.6312 2.7847 7.0077 21 1 3.1496 2.7729 7.1082 22 1 5.2205 2.6412 8.3631 23 1 5.0763 4.0681 6.4077 24 6 3.5806 -1.1972 -0.0036 25 6 2.1982 -1.1972 -0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6582 2.1324 -0.0004 30 1 4.1206 2.1324 0.0001 31 1 8.0690 -0.1543 -1.3187 32 1 7.9599 -1.9010 -1.6442 33 1 9.3543 -1.4107 0.3692 34 1 7.9095 -2.3688 0.7772 35 1 8.2168 0.6542 1.0866 36 1 8.1861 -0.5402 2.4070 37 1 4.9610 1.2149 2.0000 38 1 5.0772 -0.4252 3.7898 39 1 6.7714 0.0683 4.0239 40 1 5.3635 0.0703 7.4273 41 1 4.1206 -2.1325 -0.0072 42 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583138760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:48 Heat of formation + Delta-G solvation = -37.136963 kcal Electronic energy + Delta-G solvation = -21635.800556 eV Core-core repulsion = 18579.716408 eV Total energy + Delta-G solvation = -3056.084148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00933 -38.45005 -35.40133 -33.48806 -32.86279 -31.62865 -30.72851 -29.48279 -26.90345 -25.97532 -24.10002 -22.64160 -22.52794 -21.33029 -20.60692 -19.60768 -16.76264 -16.53306 -16.01576 -15.34473 -14.99771 -14.75532 -14.46258 -14.27791 -14.22169 -14.01750 -13.62251 -13.20400 -12.89440 -12.53900 -12.36733 -12.27016 -12.12948 -11.86469 -11.56939 -11.34756 -11.05804 -10.90009 -10.81331 -10.74912 -10.53087 -10.47236 -10.20975 -9.92073 -9.25537 -9.12566 -8.68744 -8.47120 -8.27433 -7.30959 -6.01634 -4.03316 1.48398 1.63828 3.32329 3.38134 3.42598 3.76348 4.02429 4.44217 4.87348 4.99057 5.00113 5.09961 5.11436 5.19417 5.23980 5.31310 5.34394 5.38413 5.43926 5.58548 5.61155 5.67614 5.71942 5.85723 5.89219 5.94666 6.05671 6.16534 6.22094 6.26923 6.31771 6.53090 6.61443 6.68434 6.76924 6.80190 7.20230 7.23743 7.39156 7.45241 7.80001 8.14347 8.39963 8.62105 9.05560 9.61254 11.09583 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.006570 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.272181 B = 4260.728201 C = 6118.963982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.119 4.119 4 C -0.101 4.101 5 C -0.084 4.084 6 C 0.132 3.868 7 H 0.071 0.929 8 O -0.378 6.378 9 C 0.063 3.937 10 C -0.156 4.156 11 C -0.109 4.109 12 C 0.066 3.934 13 H 0.044 0.956 14 N -0.682 5.682 15 C 0.197 3.803 16 C -0.512 4.512 17 H 0.061 0.939 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.088 4.088 25 C -0.125 4.125 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.331 0.669 38 H -0.014 1.014 39 H 0.028 0.972 40 H 0.261 0.739 41 H 0.123 0.877 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.608 -2.382 -15.864 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.119 4.119 5 C -0.084 4.084 6 C 0.074 3.926 7 H 0.088 0.912 8 O -0.296 6.296 9 C -0.014 4.014 10 C -0.195 4.195 11 C -0.148 4.148 12 C -0.045 4.045 13 H 0.062 0.938 14 N -0.315 5.315 15 C 0.071 3.929 16 C -0.551 4.551 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.106 4.106 25 C -0.143 4.143 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.003 0.997 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.141 0.859 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.096 -2.333 -15.722 16.032 hybrid contribution -0.788 0.218 1.005 1.295 sum -2.884 -2.115 -14.718 15.146 Atomic orbital electron populations 1.20770 0.91479 1.02782 1.01887 1.19900 0.95903 0.93322 0.99705 1.20933 0.93924 0.97482 1.01409 1.20976 0.94247 0.97398 0.99286 1.19577 0.93796 0.93724 1.01297 1.21033 0.90046 0.91037 0.90473 0.91154 1.87895 1.21007 1.54877 1.65856 1.22550 0.81036 1.01067 0.96697 1.22239 1.00735 1.00327 0.96158 1.21605 0.95324 0.98171 0.99652 1.21997 0.95430 0.95341 0.91771 0.93824 1.60769 1.35049 1.31249 1.04474 1.19564 0.96290 0.95006 0.82088 1.21167 1.44589 0.97480 0.91850 0.92049 1.24977 0.95627 0.95865 0.98053 1.69966 1.49304 1.22702 1.11762 0.86505 0.78697 0.82592 0.79667 1.20725 1.21239 1.19765 1.20941 0.93794 0.97954 0.97920 1.20987 0.94126 0.97406 1.01750 0.91494 0.91678 0.91560 0.86028 0.85612 0.93281 0.89193 0.91051 0.91319 0.91428 0.91060 0.85010 0.99667 0.95408 0.92952 0.85880 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.09 -1.20 5.88 -104.62 -0.62 -1.81 16 3 C -0.12 -1.67 9.70 -39.59 -0.38 -2.05 16 4 C -0.10 -1.53 8.28 -39.58 -0.33 -1.85 16 5 C -0.08 -1.36 4.34 -104.62 -0.45 -1.81 16 6 C 0.13 2.14 2.49 -27.84 -0.07 2.07 16 7 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 8 O -0.38 -5.77 9.72 -35.23 -0.34 -6.11 16 9 C 0.06 0.78 6.84 37.21 0.25 1.04 16 10 C -0.16 -2.05 6.14 -26.59 -0.16 -2.22 16 11 C -0.11 -1.82 5.51 -26.55 -0.15 -1.97 16 12 C 0.07 1.23 2.13 -67.58 -0.14 1.08 16 13 H 0.04 0.91 7.80 -51.93 -0.41 0.50 16 14 N -0.68 -15.00 6.30 -107.85 -0.68 -15.68 16 15 C 0.20 5.29 5.24 -4.97 -0.03 5.27 16 16 C -0.51 -14.76 9.32 -34.44 -0.32 -15.08 16 17 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 24 C -0.09 -1.39 9.36 -39.58 -0.37 -1.76 16 25 C -0.12 -1.77 9.70 -39.58 -0.38 -2.15 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.13 1.74 8.04 -52.49 -0.42 1.32 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 37 H 0.33 7.11 6.19 -39.29 -0.24 6.87 16 38 H -0.01 -0.42 8.06 -51.93 -0.42 -0.84 16 39 H 0.03 0.80 7.51 -51.93 -0.39 0.41 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 1.89 7.77 -52.49 -0.41 1.48 16 42 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -31.28 338.75 -9.95 -41.23 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.86 Total: 5.54 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -2.89 Total: -20.54 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.06 Total: -42.15 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.34 Total: -6.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.28 -9.95 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583138760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.090 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds