Wall clock time and date at job start Mon Mar 30 2020 02:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 120.00471 * 2 1 4 4 C 1.38227 * 120.00641 * 179.97438 * 3 2 1 5 5 C 1.38242 * 119.99820 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99842 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.48979 * 339.96478 * 6 5 4 8 8 O 1.42905 * 109.47768 * 219.94220 * 6 5 4 9 9 C 1.42902 * 114.09781 * 178.85884 * 8 6 5 10 10 C 1.53092 * 109.41432 * 61.15724 * 9 8 6 11 11 C 1.53183 * 109.16258 * 302.39270 * 10 9 8 12 12 C 1.53092 * 109.48129 * 100.00039 * 6 5 4 13 13 H 1.08995 * 109.57510 * 57.65287 * 12 6 5 14 14 N 1.46898 * 109.51924 * 297.49363 * 12 6 5 15 15 C 1.46906 * 110.99888 * 155.31453 * 14 12 6 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47092 * 90.00048 * 20 18 16 22 22 H 1.48498 * 109.47340 * 210.00299 * 20 18 16 23 23 H 1.48501 * 109.47391 * 330.00372 * 20 18 16 24 24 C 1.38231 * 119.99816 * 0.27301 * 5 4 3 25 25 C 1.38236 * 119.99929 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46786 * 90.00798 * 1 2 3 27 27 H 1.08996 * 109.47164 * 210.00128 * 1 2 3 28 28 H 1.08994 * 109.47181 * 330.00288 * 1 2 3 29 29 H 1.08004 * 119.99459 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.00422 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.48158 * 301.17610 * 9 8 6 32 32 H 1.08998 * 109.48159 * 181.13875 * 9 8 6 33 33 H 1.09004 * 109.52830 * 182.48923 * 10 9 8 34 34 H 1.08995 * 109.52677 * 62.29574 * 10 9 8 35 35 H 1.09003 * 109.54362 * 297.11295 * 11 10 9 36 36 H 1.08998 * 109.61806 * 176.89383 * 11 10 9 37 37 H 1.00902 * 111.00533 * 31.35859 * 14 12 6 38 38 H 1.09000 * 109.47033 * 300.00113 * 15 14 12 39 39 H 1.09001 * 109.46544 * 60.00058 * 15 14 12 40 40 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 41 41 H 1.07997 * 119.99827 * 179.72665 * 24 5 4 42 42 H 1.08000 * 120.00034 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7788 -0.0001 0.0028 7 1 6.1427 0.9651 -0.3494 8 8 6.2559 -1.0334 -0.8614 9 6 7.6802 -1.1050 -0.9541 10 6 8.2660 -1.3994 0.4293 11 6 7.8187 -0.3085 1.4073 12 6 6.2882 -0.2500 1.4246 13 1 5.8917 -1.1959 1.7936 14 7 5.8486 0.8425 2.3027 15 6 5.7842 0.3998 3.7020 16 6 5.3300 1.5445 4.5706 17 1 5.1115 2.5049 4.1276 18 6 5.1934 1.3657 5.9309 19 7 5.4599 0.1962 6.4704 20 14 4.6312 2.7847 7.0077 21 1 3.1496 2.7729 7.1082 22 1 5.2205 2.6412 8.3631 23 1 5.0763 4.0681 6.4077 24 6 3.5806 -1.1972 -0.0036 25 6 2.1982 -1.1972 -0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6582 2.1324 -0.0004 30 1 4.1206 2.1324 0.0001 31 1 8.0690 -0.1543 -1.3187 32 1 7.9599 -1.9010 -1.6442 33 1 9.3543 -1.4107 0.3692 34 1 7.9095 -2.3688 0.7772 35 1 8.2168 0.6542 1.0866 36 1 8.1861 -0.5402 2.4070 37 1 4.9610 1.2149 2.0000 38 1 5.0772 -0.4252 3.7898 39 1 6.7714 0.0683 4.0239 40 1 5.3635 0.0703 7.4273 41 1 4.1206 -2.1325 -0.0072 42 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583138760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:47 Heat of formation + Delta-G solvation = -56.128069 kcal Electronic energy + Delta-G solvation = -21636.624072 eV Core-core repulsion = 18579.716408 eV Total energy + Delta-G solvation = -3056.907664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24550 -39.59176 -37.08120 -34.86310 -34.58574 -33.09874 -31.84838 -30.94828 -28.31101 -27.60606 -25.43117 -24.12181 -23.68542 -23.10749 -21.75651 -20.96420 -18.71977 -17.75295 -17.38959 -16.82268 -16.64133 -16.12102 -15.83132 -15.70456 -15.49565 -15.23274 -14.57803 -14.51195 -14.31077 -14.20359 -13.99075 -13.67875 -13.51651 -13.04335 -12.85323 -12.74648 -12.70737 -12.41286 -12.35538 -12.13487 -12.04046 -11.85214 -11.73140 -11.35237 -11.26807 -10.68781 -10.49598 -9.83459 -9.41779 -9.21274 -8.24618 -6.36407 0.34891 0.49771 1.39143 1.41319 1.53112 2.37796 2.63163 2.85552 3.08607 3.50111 3.72844 3.81625 3.90603 3.97430 4.04540 4.11871 4.16966 4.21463 4.24467 4.48074 4.56335 4.60480 4.68980 4.81199 4.85160 4.85937 4.92795 4.94861 5.01451 5.05274 5.14406 5.18104 5.22332 5.28141 5.32775 5.48826 5.58741 5.63790 5.69026 5.97264 6.10413 6.19991 6.39368 6.66744 6.84623 7.34502 8.87380 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.006570 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.272181 B = 4260.728201 C = 6118.963982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.108 4.108 6 C 0.145 3.855 7 H 0.078 0.922 8 O -0.387 6.387 9 C 0.058 3.942 10 C -0.148 4.148 11 C -0.109 4.109 12 C 0.065 3.935 13 H 0.014 0.986 14 N -0.675 5.675 15 C 0.216 3.784 16 C -0.535 4.535 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.974 3.026 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.262 1.262 24 C -0.107 4.107 25 C -0.134 4.134 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.134 0.866 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.335 0.665 38 H -0.050 1.050 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.117 0.883 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 -1.118 -16.911 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.108 4.108 6 C 0.087 3.913 7 H 0.096 0.904 8 O -0.306 6.306 9 C -0.018 4.018 10 C -0.186 4.186 11 C -0.147 4.147 12 C -0.045 4.045 13 H 0.032 0.968 14 N -0.308 5.308 15 C 0.088 3.912 16 C -0.573 4.573 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.798 3.202 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.186 1.186 24 C -0.125 4.125 25 C -0.152 4.152 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.152 0.848 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.154 0.846 38 H -0.033 1.033 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.855 -1.073 -16.801 17.075 hybrid contribution -0.540 -0.243 1.294 1.423 sum -3.396 -1.316 -15.507 15.929 Atomic orbital electron populations 1.20831 0.89004 1.03543 1.03330 1.20337 0.97796 0.92849 0.98228 1.21295 0.93656 0.98794 1.00704 1.21193 0.95120 0.97351 0.99492 1.19726 0.93893 0.94436 1.02734 1.20800 0.90349 0.91568 0.88550 0.90437 1.87902 1.22932 1.54563 1.65158 1.22834 0.79408 1.03083 0.96505 1.22207 1.02521 0.98247 0.95644 1.21595 0.93693 1.00010 0.99409 1.22077 0.96789 0.92740 0.92933 0.96758 1.60677 1.35149 1.32299 1.02688 1.19155 0.93540 0.93585 0.84871 1.21506 1.45148 0.97908 0.92725 0.91670 1.25979 0.95299 0.98833 0.99563 1.70105 1.49975 1.25050 1.12361 0.85316 0.78524 0.78966 0.77422 1.19632 1.20595 1.18617 1.21058 0.94791 0.97735 0.98903 1.21289 0.93685 0.98821 1.01398 0.89586 0.91027 0.90718 0.83677 0.84773 0.91703 0.86217 0.88184 0.92168 0.90756 0.93814 0.84605 1.03255 0.98128 0.92600 0.86513 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 10.01 71.24 0.71 -1.32 16 2 C -0.09 -2.38 5.88 -19.87 -0.12 -2.49 16 3 C -0.13 -3.38 9.70 22.27 0.22 -3.16 16 4 C -0.11 -3.40 8.28 22.27 0.18 -3.21 16 5 C -0.11 -3.54 4.34 -19.86 -0.09 -3.62 16 6 C 0.15 4.74 2.49 29.88 0.07 4.81 16 7 H 0.08 2.39 8.00 -2.39 -0.02 2.37 16 8 O -0.39 -11.57 9.72 -148.98 -1.45 -13.02 16 9 C 0.06 1.31 6.84 72.01 0.49 1.80 16 10 C -0.15 -3.76 6.14 30.69 0.19 -3.57 16 11 C -0.11 -3.71 5.51 30.71 0.17 -3.54 16 12 C 0.07 2.54 2.13 45.00 0.10 2.64 16 13 H 0.01 0.64 7.80 -2.39 -0.02 0.62 16 14 N -0.68 -30.82 6.30 -495.12 -3.12 -33.94 16 15 C 0.22 12.22 5.24 85.56 0.45 12.67 16 16 C -0.53 -31.45 9.32 25.60 0.24 -31.21 16 17 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 20 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 24 C -0.11 -3.44 9.36 22.27 0.21 -3.23 16 25 C -0.13 -3.75 9.70 22.27 0.22 -3.54 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 28 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 29 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.13 3.64 8.04 -2.91 -0.02 3.62 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.04 1.70 7.54 -2.39 -0.02 1.68 16 37 H 0.33 14.77 6.19 -89.69 -0.56 14.22 16 38 H -0.05 -3.13 8.06 -2.39 -0.02 -3.15 16 39 H 0.00 0.04 7.51 -2.39 -0.02 0.02 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.12 3.76 7.77 -2.91 -0.02 3.74 16 42 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -69.20 338.75 1.68 -67.52 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.43 Total: 26.53 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 3.50 Total: -36.44 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -2.83 Total: -91.56 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -1.45 Total: -13.02 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.20 1.68 -67.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583138760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.392 kcal (2) G-P(sol) polarization free energy of solvation -69.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds